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Human biospecimens are subjected to collection, processing, and storage that can significantly alter their molecular composition and consistency. These biospecimen preanalytical factors, in turn, influence experimental outcomes and the ability to reproduce scientific results. Currently, the extent and type of information specific to the biospecimen preanalytical conditions reported in scientific publications and regulatory submissions varies widely. To improve the quality of research that uses human tissues, it is crucial that information on the handling of biospecimens be reported in a thorough, accurate, and standardized manner. The Biospecimen Reporting for Improved Study Quality (BRISQ) recommendations outlined herein are intended to apply to any study in which human biospecimens are used. The purpose of reporting these details is to supply others, from researchers to regulators, with more consistent and standardized information to better evaluate, interpret, compare, and reproduce the experimental results. The BRISQ guidelines are proposed as an important and timely resource tool to strengthen communication and publications on biospecimen-related research and to help reassure patient contributors and the advocacy community that their contributions are valued and respected.

FACET is a new facility under construction at the SLAC National Accelerator Laboratory. The FACET beam line is designed to provide 23 GeV tightly focused and compressed electron and positron bunches for beam driven plasma wakefield acceleration research and other experiments. Achieving optimal beam parameters for various experimental conditions requires the optics capability for tuning in a sufficiently wide range. This will be achieved by using optics tuning systems (knobs). Design of such systems for FACET is discussed.

The SUPER-B detector solenoid has a strong 1.5 T field in the Interaction Region (IR) area, and its tails extend over the range of several meters. The main effect of the solenoid field is coupling of the horizontal and vertical betatron motion which must be corrected in order to preserve the small design beam size at the Interaction Point. The additional effects are orbit and dispersion caused by the angle between the solenoid and beam trajectories. The proposed correction system provides local compensation of the solenoid effects independently for each side of the IR. It includes 'bucking' solenoids to remove the solenoid field tails and a set of skew quadrupoles, dipole correctors and anti-solenoids to cancel linear perturbations to the optics. Details of the correction system are presented.

We investigate the nature of the mass-metallicity (M-Z) relation for long gamma-ray burst (LGRB) host galaxies. Recent studies suggest that the M-Z relation for local LGRB host galaxies may be systematically offset towards lower metallicities relative to the M-Z relation defined by the general star forming galaxy (SDSS) population. The nature of this offset is consistent with suggestions that low metallicity environments may be required to produce high mass progenitors, although the detection of several GRBs in high-mass, high-metallicity galaxies challenges the notion of a strict metallicity cut-off for host galaxies that are capable of producing GRBs. We show that the nature of this reported offset may be explained by a recently proposed anti-correlation between the star formation rate (SFR) and the metallicity of star forming galaxies. If low metallicity galaxies produce more stars than their equally massive, high-metallicity counterparts, then transient events that closely trace the SFR in a galaxy would be more likely to be found in these low metallicity, low mass galaxies. Therefore, the offset between the GRB and SDSS defined M-Z relations may be the result of the different methods used to select their respective galaxy populations, with GRBs being biased towards low metallicity, high SFR, …

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We have searched for 14.4 keV solar axions or more general axion-like particles (ALPs), that may be emitted in the M1 nuclear transition of 57Fe, by using the axion-to-photon conversion in the CERN Axion Solar Telescope (CAST) with evacuated magnet bores (Phase I). From the absence of excess of the monoenergetic X-rays when the magnet was pointing to the Sun, we set model-independent constraints on the coupling constants of pseudoscalar particles that couple to two photons and to a nucleon g{sub ay}|-1.19g{sub aN}{sup 0}+g{sub aN}{sup 3}| < 1.36 x 10{sup -16} GeV{sup -1} for ma < 0.03 eV at the 95% confidence level.

The compact Wedge Range Filter (WRF) proton spectrometer was developed for OMEGA and transferred to the National Ignition Facility (NIF) as a National Ignition Campaign (NIC) diagnostic. The WRF measures the spectrum of protons from D-{sup 3}He reactions in tuning-campaign implosions containing D and {sup 3}He gas; in this work we report on the first proton spectroscopy measurement on the NIF using WRFs. The energy downshift of the 14.7-MeV proton is directly related to the total {rho}R through the plasma stopping power. Additionally, the shock proton yield is measured, which is a metric of the final merged shock strength.

The particle-time-of-flight (pTOF) diagnostic, fielded alongside a Wedge Range-Filter (WRF) proton spectrometer, will provide an absolute timing for the shock-burn weighted {rho}R measurements that will validate the modeling of implosion dynamics at the National Ignition Facility (NIF). In the first phase of the project, pTOF has recorded accurate bang times in cryogenic DT, DT-Exploding Pusher and D{sup 3}He implosions using DD or DT neutrons with an accuracy better than {+-}70 ps. In the second phase of the project, a deflecting magnet will be incorporated into the pTOF design for simultaneous measurements of shock- and compression-bang times in D{sup 3}He-filled surrogate implosions using D{sup 3}He protons and DD-neutrons, respectively.

We report high-level ab initio calculations and single-photon ionization mass spectrometry study of ionization of adenine (A), thymine (T), cytosine (C) and guanine (G). For thymine and adenine, only the lowest-energy tautomers were considered, whereas for cytosine and guanine we characterized five lowest-energy tautomeric forms. The first adiabatic and several vertical ionization energies were computed using equation-of-motion coupled-cluster method for ionization potentials with single and double substitutions. Equilibrium structures of the cationic ground states were characterized by DFT with the {omega}B97X-D functional. The ionization-induced geometry changes of the bases are consistent with the shapes of the corresponding molecular orbitals. For the lowest-energy tautomers, the magnitude of the structural relaxation decreases in the following series G > C > A > T, the respective relaxation energies being 0.41, 0.32, 0.25 and 0.20 eV. The computed adiabatic ionization energies (8.13, 8.89, 8.51-8.67 and 7.75-7.87 eV for A,T,C and G, respectively) agree well with the onsets of the photoionization efficiency (PIE) curves (8.20 {+-} 0.05, 8.95 {+-} 0.05, 8.60 {+-} 0.05 and 7.75 {+-} 0.05 eV). Vibrational progressions for the S{sub 0}-D{sub 0} vibronic bands computed within double-harmonic approximation with Duschinsky rotations are compared with previously reported experimental photoelectron spectra.

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The uncertainty in setting the renormalization scale in finite-order perturbative QCD predictions using standard methods substantially reduces the precision of tests of the Standard Model in collider experiments. It is conventional to choose a typical momentum transfer of the process as the renormalization scale and take an arbitrary range to estimate the uncertainty in the QCD prediction. However, predictions using this procedure depend on the choice of renormalization scheme, leave a non-convergent renormalon perturbative series, and moreover, one obtains incorrect results when applied to QED processes. In contrast, if one fixes the renormalization scale using the Principle of Maximum Conformality (PMC), all non-conformal {l_brace}{beta}{sub i}{r_brace}-terms in the perturbative expansion series are summed into the running coupling, and one obtains a unique, scale-fixed, scheme-independent prediction at any finite order. The PMC renormalization scale {mu}{sub R}{sup PMC} and the resulting finite-order PMC prediction are both to high accuracy independent of choice of the initial renormalization scale {mu}{sub R}{sup init}, consistent with renormalization group invariance. Moreover, after PMC scale-setting, the n!-growth of the pQCD expansion is eliminated. Even the residual scale-dependence at fixed order due to unknown higher-order {l_brace}{beta}{sub i}{r_brace}-terms is substantially suppressed. As an application, we apply the PMC procedure to obtain …

In cyanobacteria CO2 fixation is localized in a special proteinaceous organelle, the carboxysome. The CO2 fixation enzymes are encapsulated by a selectively permeable protein shell. By structurally and functionally characterizing subunits of the carboxysome shell and the encapsulated proteins, we hope to understand what regulates the shape, assembly and permeability of the shell, as well as the targeting mechanism and organization of the encapsulated proteins. This knowledge will be used to enhance CO2 fixation in both cyanobacteria and plants through synthetic biology. The same strategy can also serve as a template for the production of modular synthetic bacterial organelles. Our research is conducted using a variety of techniques such as genomic sequencing and analysis, transcriptional regulation, DNA synthesis, synthetic biology, protein crystallization, Small Angle X-ray Scattering (SAXS), protein-protein interaction assays and phenotypic characterization using various types of cellular imaging, e.g. fluorescence microscopy, Transmission Electron Microscopy (TEM), and Soft X-ray Tomography (SXT).

The successful operation of accelerator cavities has to satisfy both rf and mechanical requirements. It is highly desirable that electromagnetic, thermal and structural effects such as cavity wall heating and Lorentz force detuning in superconducting rf cavities can be addressed in an integrated analysis. Based on the SLAC parallel finite-element code infrastructure for electromagnetic modeling, a novel multi-physics analysis tool has been developed to include additional thermal and mechanical effects. The parallel computation enables virtual prototyping of accelerator cavities on computers, which would substantially reduce the cost and time of a design cycle. The multi-physics tool is applied to the LCLS rf gun for electromagnetic, thermal and structural analyses.

Tracking features and exploring their temporal dynamics can aid scientists in identifying interesting time intervals in a simulation and serve as basis for performing quantitative analyses of temporal phenomena. In this paper, we develop a novel approach for tracking subsets of isosurfaces, such as burning regions in simulated flames, which are defined as areas of high fuel consumption on a temperature isosurface. Tracking such regions as they merge and split over time can provide important insights into the impact of turbulence on the combustion process. However, the convoluted nature of the temperature isosurface and its rapid movement make this analysis particularly challenging. Our approach tracks burning regions by extracting a temperature isovolume from the four-dimensional space-time temperature field. It then obtains isosurfaces for the original simulation time steps and labels individual connected 'burning' regions based on the local fuel consumption value. Based on this information, a boundary surface between burning and non-burning regions is constructed. The Reeb graph of this boundary surface is the tracking graph for burning regions.

The CLIC Power Extraction and Transfer Structure (PETS) is a passive microwave device in which bunches of the drive beam interact with the impedance of the periodically loaded waveguide and generate RF power for the main linac accelerating structure. The demands on the high power production ({approx} 150 MW) and the needs to transport the 100 A drive beam for about 1 km without losses, makes the PETS design rather unique and the operation very challenging. In the coming year, an intense PETS testing program will be implemented. The target is to demonstrate the full performance of the PETS operation. The testing program overview and test results available to date are presented.

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The advancement of computational technology has resulted in the wide-spread availability of powerful radiation transport Monte Carlo codes. Prevailing practices today rely heavily on Monte Carlo codes to provide the basis for assessing the reactivity of various fissile systems for nuclear criticality safety (NCS). In 1958, Weinberg and Wigner expressed their concerns on a 'deplorable trend in reactor design - the tendency to substitute a code for a theory'. Unfortunately, their concerns have largely become a reality in many modern NCS practices. lacking the time or information to understand the underlying neutron physics of the fissile system under consideration is indeed a deplorable trend. The purpose of this paper is to demonstrate that many features of criticality hand calculation methods are indeed based upon the fundamentals of the density law and that many correlations of important physics parameters can be more easily understood from such a perspective. Historically, the density law was recognized by many pioneers in the field, including during the Manhattan Project. However, it was by and large an 'oral tradition' in that bits and pieces of great physical insights of the pioneers were scattered in many earlier publications. This paper attempts to bring together some of the …

The PEP-II B-Factory at SLAC (3.1 GeV e{sup +} x 9.0 GeV e{sup -}) operated from 1999 to 2008, delivering luminosity to the BaBar experiment. The design luminosity was reached after one and a half years of operation. In the end PEP-II surpassed by four times its design luminosity reaching 1.21 x 10{sup 34} cm{sup -2} s{sup -1}. It also set stored beam current records of 2.1 A e{sup -} and 3.2 A e{sup +}. Continuous injection was implemented with BaBar taking data. The total delivered luminosity to the BaBar detector was 557.4 fb{sup -1} spanning five upsilon resonances. PEP-II was constructed by SLAC, LBNL, and LLNL with help from BINP, IHEP, the BaBar collaboration, and the US DOE OHEP.

The following is an overview of the measurements of the CKM matrix elements |V{sub cb}| and |V{sub ub}| that are based on detailed studies of semileptonic B decays by the BABAR and Belle Collaborations and major advances in QCD calculations. In addition, a new and improved measurement of the ratios R(D{sup (*)}) = {Beta}({bar B} {yields} D{sup (*)}{tau}{sup -}{bar {nu}}{sub {tau}})/{Beta}({bar B} {yields} D{sup (*)}{ell}{sup -}{bar {nu}}{sub {ell}}) is presented. Here D{sup (*)} refers to a D or a D* meson and {ell} is either e or {mu}. The results, R(D) = 0.440 {+-} 0.058 {+-} 0.042 and R(D*) = 0.332 {+-} 0.024 {+-} 0.018, exceed the Standard Model expectations by 2.0{sigma} and 2.7{sigma}, respectively. Taken together, they disagree with these expectations at the 3.4{sigma} level. The excess of events cannot be explained by a charged Higgs boson in the type II two-Higgs-doublet model.

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