The FOCUS experiment is designed to investigate charm particle decays. These charm particles are produced by the interaction of a photon beam with an average energy of 175 GeV on a BeO target and travel an average of few millimeters before decaying in the spectrometer. By reconstructing the daughters from the decay, we can infer properties of the charm particles. Semileptonic decays have been used to measure many CKM matrix elements. These decays are interesting due to the simplicity of their theoretical description but they are experimentally challenging due to the fact that a neutrino is not detected. Analysis of semileptonic decays in the charm sector are of great interest because they provide an excellent environment to test and to calibrate theoretical calculation that can be implemented in the determination of poorly known matrix elements such as V{sub ub}. In this thesis we report an analysis of the decays D{sup 0} {yields} {pi}{sup -}{mu}{sup +}{nu} and D{sup 0} {yields} K{sup -} {mu}{sup +}{nu}. We measure the relative branching ratio as well as the ratio of the form factors f{sub +}{sup {pi}}(0)/f{sub +}{sup K}(0). Using a weighting technique, we further report a parametric analysis of the q{sup 2} dependence for both …

The discovery that ultra-intense laser pulses (I > 10{sup 18} W/cm{sup 2}) can produce short pulse, high energy proton beams has renewed interest in the fundamental mechanisms that govern particle acceleration from laser-solid interactions. Experiments have shown that protons present as hydrocarbon contaminants on laser targets can be accelerated up to energies > 50 MeV. Different theoretical models that explain the observed results have been proposed. One model describes a front-surface acceleration mechanism based on the ponderomotive potential of the laser pulse. At high intensities (I > 10{sup 18} W/cm{sup 2}), the quiver energy of an electron oscillating in the electric field of the laser pulse exceeds the electron rest mass, requiring the consideration of relativistic effects. The relativistically correct ponderomotive potential is given by U{sub p} = ([1 + I{lambda}{sup 2}/1.3 x 10{sup 18}]{sup 1/2} - 1) m{sub o}c{sup 2}, where I{lambda}{sup 2} is the irradiance in W {micro}m{sup 2}/cm{sup 2} and m{sub o}c{sup 2} is the electron rest mass. At laser irradiance of I{lambda}{sup 2} {approx} 10{sup 20} W {micro}m{sup 2}/cm{sup 2}, the ponderomotive potential can be of order several MeV. A few recent experiments--discussed in Chapter 3 of this thesis--consider this ponderomotive potential sufficiently strong to accelerate …

This thesis details the measurement of the p{bar p} {yields} W{gamma} + X {yields} {mu}{nu}{gamma} + X cross section at {radical}s = 1.96 TeV using the D0 detector at Fermilab, in 134.5 pb{sup -1} of integrated luminosity. From the photon E{sub T} spectrum limits on anomalous couplings of the photon to the W are obtained. At 95% confidence level, limits of -1.05 < {Delta}{kappa} < 1.04 for {lambda} = 0 and -0.28 < {lambda} < 0.27 for {Delta}{kappa} = 0 are obtained on the anomalous coupling parameters. The charge signed rapidity difference from the data is displayed, and its significance discussed.

This thesis presents a search for physics beyond the standard model of elementary particles in events containing three or more charged leptons in the final state. The search is based on an R-parity violating supersymmetric model that assumes supersymmetric particles are pair produced at hadron colliders and the R-parity violating coupling is small enough so that these particles ''cascade'' decay into the lightest supersymmetric particle. The lightest supersymmetric particle may only decay into two charged leptons (electrons or muons) plus a neutrino through a lepton number violating interaction. Proton-antiproton collision events produced with {radical} s= 1.96 TeV are collected between March 2002 and August 2004 with an integrated luminosity of 346 pb{sup -1}. R-parity violating supersymmetry is sought for in two data samples, one with exactly three leptons and one with four or more leptons. The trilepton sample has a modest background primarily from Drell-Yan events where an additional lepton is a result of photon conversions or jet misidentification while the four or more lepton sample has an extremely low background. In the three lepton samples 6 events are observed while in the four or more lepton sample zero events are observed. These results are consistent with the standard model …

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Designing an adaptive optics (AO) system for extremely large telescopes (ELT's) will present new optical engineering challenges. Several of these challenges are addressed in this work, including first-order design of multi-conjugate adaptive optics (MCAO) systems, pyramid wavefront sensors (PWFS's), and laser guide star (LGS) spot elongation. MCAO systems need to be designed in consideration of various constraints, including deformable mirror size and correction height. The y,{bar y} method of first-order optical design is a graphical technique that uses a plot with marginal and chief ray heights as coordinates; the optical system is represented as a segmented line. This method is shown to be a powerful tool in designing MCAO systems. From these analyses, important conclusions about configurations are derived. PWFS's, which offer an alternative to Shack-Hartmann (SH) wavefront sensors (WFS's), are envisioned as the workhorse of layer-oriented adaptive optics. Current approaches use a 4-faceted glass pyramid to create a WFS analogous to a quad-cell SH WFS. PWFS's and SH WFS's are compared and some newly-considered similarities and PWFS advantages are presented. Techniques to extend PWFS's are offered: First, PWFS's can be extended to more pixels in the image by tiling pyramids contiguously. Second, pyramids, which are difficult to manufacture, can …

Reliable group ordered delivery of multicast messages in a distributed system is a useful service that simplifies the programming of distributed applications. Such a service helps to maintain the consistency of replicated information and to coordinate the activities of the various processes. With the increasing popularity of the Internet, there is an increasing interest in scaling the protocols that provide this service to the environment of the Internet. The InterGroup protocol suite, described in this dissertation, provides such a service, and is intended for the environment of the Internet with scalability to large numbers of nodes and high latency links. The InterGroup protocols approach the scalability problem from various directions. They redefine the meaning of group membership, allow voluntary membership changes, add a receiver-oriented selection of delivery guarantees that permits heterogeneity of the receiver set, and provide a scalable reliability service. The InterGroup system comprises several components, executing at various sites within the system. Each component provides part of the services necessary to implement a group communication system for the wide-area. The components can be categorized as: (1) control hierarchy, (2) reliable multicast, (3) message distribution and delivery, and (4) process group membership. We have implemented a prototype of the …

We have carried out a search for a charmed baryon {Omega}{sup *}{sub c} decaying to {Omega}{sup 0}{sub c} and a {gamma} where {Omega}{sub c} candidates are reconstructed using decay modes {Omega}{sup -}{pi}{sup +}(c1), {Omega}{sup -}{pi}{sup +}{pi}{sup 0}(c2), {Omega}{sup -}{pi}{sup +}{pi}{sup -}{pi}{sup +}(c3) and {Xi}{sup -}K{sup -}{pi}{sup +}{pi}{sup +}(c4). This search is performed by analyzing integrated luminosity of 230.7 fb{sup -1} data collected by the BABAR detector at the Stanford Linear Accelerator Center. In decay channel {Omega}{sup *}{sub c} {yields} {Omega}{sup 0}{sub c}({Omega}{sup -}{pi}{sup +}){gamma} (C1), we observe a signal yield of 39.2{sup +9.8}{sub -9.1}(stat){+-}6.0(syst) events with a significance of 4.2 standard deviations. In decay channels {Omega}{sup *}{sub c} {yields} {Omega}{sup 0}{sub c}({Omega}{sup -}{pi}{sup +}{pi}{sup 0}){gamma} (C2) and {Omega}{sup *}{sub c} {yields} {Omega}{sup 0}{sub c}({Xi}{sup -}K{sup -}{pi}{sup +}{pi}{sup +}){gamma} (C4), we observe signal yields of 55.2{sup 16.1}{sub -15.2} {+-} 5.6 and 20.2{sup +9.3}{sub -8.5} {+-} 3.1 with significances of 3.4 and 2.0 {sigma}, respectively. As for the {Omega}{sup *}{sub c} {yields} {Omega}{sup 0}{sub c}({Omega}{sup -}{pi}{sup +}{pi}{sup -}{pi}{sup +}){gamma} (C3) decay channel, we observe signal yields of -5.1{sup +5.3.8}{sub -4.7}{+-}1.0 without a positive significance. We assume the same production mechanism for the four decay channels of {Omega}{sup *}{sub c} studied. By combining …

In this thesis we present a new technique to analyze events containing two highly energetic leptons, as a probe of the Standard Model. The philosophy is to consider the data in a more global way, as opposed to the more traditional process dependent approach of extracting a given signal over the expected backgrounds by using various kinematical requirements. We use our global technique to simultaneously measure the cross sections of the main Standard Model processes; the t{bar t}, WW and Z {yields} {tau}{tau} production from p{bar p} collisions at {radical}s = 1.96 TeV in the CDF detector at Fermilab. We select events by requiring they contain two highly energetic leptons (e{mu}, ee, or {mu}{mu}), and make no other kinematic requirements, except for the ee and {mu}{mu} channels. We then use a likelihood fit of the data in the two-dimensional phase space defined by the missing transverse energy (E{sub T}) and the number of jets in the event (N{sub jet}), to the expected Standard Model distributions, to simultaneously extract the production cross-sections of the main process contributing to our dilepton sample.

In this dissertation, they present a study of the untagged decay of B{sub s}{sup 0} {yields} J/{psi}{phi}, the final state of which is a superposition of the CP-even and CP-odd states. Within the framework of the standard model (SM), to a good approximation, the two CP eigenstates of the (B{sub s}{sup 0}, {bar B}{sub s}{sup 0}) system are equivalent to mass eigenstates. The data collected by the D0 detector between June 2002 to August 2004 (an integrated luminosity of approximately 450 pb{sup -1}) has been used for the analysis presented in this thesis. From a simultaneous fit to the B{sub s}{sup 0} candidate mass, lifetime, and the angular distribution of the decay products, they obtain the CP-odd fraction in the final state at production time to be 0.16 {+-} 0.10(stat) {+-} 0.02(syst). The average lifetime of the (B{sub s}{sup 0}, {bar B}{sub s}{sup 0}) system is measured to be 1.39{sub -0.16}{sup +0.13}(stat){sub -0.02}{sup +0.01}(syst) ps, with the relative width difference between the heavy and light mass eigenstates, {Delta}{Gamma}/{bar {Gamma}} = ({Gamma}{sup L}/{Gamma}{sup H})/{bar {Gamma}} = 0.24{sub -0.38}{sup +0.28}(stat){sub -0.04}{sup +0.03}(syst). With the additional constraint from the world average of the B{sub s}{sup 0} lifetime measurements using semileptonic decays, they find …

Much of the previous work in the large data visualization area has solely focused on handling the scale of the data. This task is clearly a great challenge and necessary, but it is not sufficient. Applying standard visualization techniques to large scale data sets often creates complicated pictures where meaningful trends are lost. A second challenge, then, is to also provide algorithms that simplify what an analyst must understand, using either visual or quantitative means. This challenge can be summarized as improving the legibility or reducing the complexity of massive data sets. Fully meeting both of these challenges is the work of many, many PhD dissertations. In this dissertation, we describe some new techniques to address both the scale and legibility challenges, in hope of contributing to the larger solution. In addition to our assumption of simultaneously addressing both scale and legibility, we add an additional requirement that the solutions considered fit well within an interoperable framework for diverse algorithms, because a large suite of algorithms is often necessary to fully understand complex data sets. For scale, we present a general architecture for handling large data, as well as details of a contract-based system for integrating advanced optimizations into a …

A search for the Standard Model Higgs boson in proton-antiproton collisions with center-of-mass energy 1.96 TeV at the Tevatron is presented in this dissertation. The process of interest is the associated production of W boson and Higgs boson, with the W boson decaying leptonically and the Higgs boson decaying into a pair of bottom quarks. The dataset in the analysis is accumulated by the D0 detector from April 2002 to April 2008 and corresponding to an integrated luminosity of 2.7 fb{sup -1}. The events are reconstructed and selected following the criteria of an isolated lepton, missing transverse energy and two jets. The D0 Neural Network b-jet identification algorithm is further used to discriminate b jets from light jets. A multivariate analysis combining Matrix Element and Neural Network methods is explored to improve the Higgs boson signal significance. No evidence of the Higgs boson is observed in this analysis. In consequence, an observed (expected) limit on the ratio of {sigma} (p{bar p} {yields} WH) x Br (H {yields} b{bar b}) to the Standard Model prediction is set to be 6.7 (6.4) at 95% C.L. for the Higgs boson with a mass of 115 GeV.

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Presented are the results of a search for direct CP violation in Cabibbo-suppressed decays of D{sup 0} to two charged daughters. The analysis described was performed on {approx}230 fb{sup -1} of the BABAR data sample, recorded at the Stanford Linear Accelerator Center and using the PEP-II electron storage rings. We measure CP asymmetries for decay to the KK and {pi}{pi} final states, as well as for the branching ratio, and develop a new technique for tagging-efficiency correction using the Cabibbo-favored K{pi} final state. We find some evidence for CP violation in decays to the KK final state and results that suggest CP violation in the {pi}{pi} final state as well.

The development of new odd-Z-projectile reactions leading to the production of transactinide elements is described. The cross section of the even-Z-projectile 208Pb(64Ni, n)271Ds reaction was measured at two new energies using the Berkeley Gas-filled Separator at the Lawrence Berkeley National Laboratory 88-Inch Cyclotron. In total, seven decay chains attributable to 271Ds were observed. These data, combined with previous results, establish an excitation function for the production of 271Ds. The maximum cross section was 20 +15 -11 pb at a center-of-target energy of 311.5 MeV in the laboratory frame.The data from the 271Ds experiments were used to estimate the optimum beam energy for the new odd-Z-projectile 208Pb(65Cu, n)272-111 reaction using the Fusion by Diffusion theory proposed by Swiatecki, Siwek-Wilczynska, and Wilczynski. A cross section for this reaction was measured for the first time, at a center-of-target energy of 321.1 MeV in the laboratory frame. The excitation energy f or compound nuclei formed at the target center was 13.2 MeV. One decay chain was observed, resulting in a measured cross section of 1.7 +3.9 -1.4 pb. This decay chain is in good agreement with previously published data on the decay of 272-111.The new odd-Z-projectile 208Pb(55Mn, n)262Bh reaction was studied at three different …

Today's information world, bits of data are processed by semiconductor chips, and stored in the magnetic disk drives. But tomorrow's information technology may see magnetism (spin) and semiconductivity (charge) combined in one 'spintronic' device that exploits both charge and 'spin' to carry data (the best of two worlds). Spintronic devices such as spin valve transistors, spin light emitting diodes, non-volatile memory, logic devices, optical isolators and ultra-fast optical switches are some of the areas of interest for introducing the ferromagnetic properties at room temperature in a semiconductor to make it multifunctional. The potential advantages of such spintronic devices will be higher speed, greater efficiency, and better stability at a reduced power consumption. This Thesis contains two main topics: In-depth understanding of magnetism in Mn doped ZnO, and our search and identification of at least six new above room temperature ferromagnetic semiconductors. Both complex doped ZnO based new materials, as well as a number of nonoxides like phosphides, and sulfides suitably doped with Mn or Cu are shown to give rise to ferromagnetism above room temperature. Some of the highlights of this work are discovery of room temperature ferromagnetism in: (1) ZnO:Mn (paper in Nature Materials, Oct issue, 2003); (2) ZnO …

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For this study, a high throughput method for identifying and testing regulatory elements was examined. In addition, the validity of promoters predicted by FirstEF was tested. It was found that by combining computer based promoter and first exon predictions from FirstEF (Davuluri et al., 2001) with PCR-based cloning to generate luciferase reporter constructs, and by testing reporter activity in cultured mammalian cells plated in a 96 well format one could identify promoter activity in a relatively high throughput manner. The data generated in this study suggest that FirstEF predictions are sometimes incorrect. Therefore, having a strategy for defining which FirstEF predicted promoters to test first may accelerate the process. Initially testing promoters that are at a confirmed transcription start site for a gene, at a possible alternate transcription start site or in a region of conserved sequence would be the best candidates, while promoters predicted in gene desert regions may not be as easy to confirm. The luciferase assay lent itself very well to the high throughput search, however the subcloning did not always go smoothly. The numerous steps that this traditional subcloning method requires were time consuming and increased the opportunities for errors. A faster method that skips many …

We report on a measurement of the rapidity distribution, d{sigma}/dy, for Z=Drell-Yan {yields} ee events produced in p{bar p} collisions at {radical}s = 1.96 TeV. The data sample consists of 2.13 fb{sup -1} corresponding to about 160,000 Z/Drell-Yan {yields} ee candidates in the Z boson mass region collected by the Collider Detector at Fermilab. The d{sigma}/dy distribution, which is measured over the full kinematic range for e{sup +}e{sup -} pairs in the invariant mass range 66 < M{sub ee} < 116 GeV/c{sup 2}, is compared with theory predictions. There is good agreement between the data and predictions of Quantum Chromodynamics in Next to Leading Order with the CTEQ6.1M Parton Distribution Functions.

This thesis describes a measurement of the average proper decay time of the B{sub c}{sup {+-}} mesons, the ground state of bottom and charm quark bound states. The lifetime measurement is carried out in the decay modes B{sub c}{sup {+-}} {yields} J/{psi} + e{sup {+-}} + X and B{sub c}{sup {+-}} {yields} J/{psi} + {mu}{sup {+-}} + X, where the J/{psi} decays as J/{psi} {yields} {mu}{sup +}{mu}{sup -} and the X are unmeasured particles such as {nu}{sub e} or {nu}{sub {mu}}. The data are collect by the CDF II detector which measures the properties of particles created in {radical}s = 1.96 TeV p{bar p} collisions delivered by the Fermilab Tevatron. This measurement uses {approx} 1 fb{sup -1} of integrated luminosity. The measured average proper decay time of B{sub c}{sup {+-}} mesons, {tau} = 0.475{sub -0.049}{sup +0.053}(stat.) {+-} 0.018(syst.) ps, is competitive with the most precise measurements in the world and confirms previous measurements and theoretical predictions.

This analysis describes a search for a standard model Higgs boson produced in association with a Z boson through the decay mode ZH {yields} e{sup +}e{sup -}b{bar b} in p{bar p} collisions at {radical}s = 1.96 TeV at the Fermilab Tevatron Collider. The data sample used in this analysis corresponds to 452 pb{sup -1} of integrated luminosity accumulated with the D{null} detector. Agreement between data and standard model predictions is observed. A 95% confidence level upper exclusion limit for the {sigma}(p{bar p} {yields} ZH) x BR(H {yields} b{bar b}) channel is set between 3.2-8.2 pb for Higgs masses of 105 to 145 GeV.

The castor bean plant (Ricinus communis) is a member of the family Euphorbiaceae. In spite of its common name, the castor plant is not a true bean (i.e., leguminous plants belonging to the family, Fabaceae). Ricinus communis is native to tropical Africa, but because the plant was recognized for its production of oil with many desirable properties, it has been introduced and cultivated in warm temperate regions throughout the world (Armstrong 1999 and Brown 2005). Castor bean plants have also been valued by gardeners as an ornamental plant and, historically, as a natural rodenticide. Today, escaped plants grow like weeds throughout much of the southwestern United States, and castor seeds are even widely available to the public for order through the Internet. In this study, multiple loci of chloroplast noncoding sequence data and a few nuclear noncoding regions were examined to identify DNA polymorphisms present among representatives from a geographically diverse panel of Ricinus communis cultivated varieties. The primary objectives for this research were (1) to successfully cultivate castor plants and extract sufficient yields of high quality DNA from an assortment of castor cultivated varieties, (2) to use PCR and sequencing to screen available universal oligos against a small panel …

The production of heavy quarkonium in hadronic collisions provides an ideal testing ground for our understanding of the production mechanisms for heavy quarks and the non-perturbative QCD effects that bind the quark pairs into quarkonium. In this analysis, the inclusive production cross section of the {Upsilon}(1S) bottomonium state is measured using the {Upsilon}(1S) {yields} {mu}{sup +}{mu}{sup -} decay mode. The data sample corresponds to an integrated luminosity of 159.1 {+-} 10.3 pb{sup -1}. We determine differential cross sections as functions of the {Upsilon}(1S) transverse momentum, p{sub T}{sup {Upsilon}}, for three ranges of the {Upsilon}(1S) rapidity: 0 < |y{sup {Upsilon}}| < 0.6,0.6 < |y{sup {Upsilon}}| < 1.2 and 1.2 < |y{sup {Upsilon}}| < 1.8. The shapes of d{sigma}/d{sub p{sub T}} cross sections show little variation with rapidity and are consistent with the published Run I CDF measurement over the rapidity range |y{sup {Upsilon}}| < 0.4.

In 2001, the D0 experiment entered a new era. Run II of the Tevatron at the Fermi National Accelerator Laboratory began, and the collider became the highest energy particle accelerator in the world. Accordingly, the D0 detector had already undergone a series of upgrades in order to fully exploit the physics now within reach. These included improvements to the tracking, calorimetry, muon detection and triggering capabilities. In the Standard Model, the Higgs boson is the last piece of the puzzle that remains to be discovered. The Higgs mechanism and consequently the Higgs boson is thought to be the fundamental ingredient by which particles acquire mass, and its existence (or lack of existence) is one of the most pressing issues in particle physics today. As such, one of the main goals of the Run II physics programme at D0 is to search for it. Armed with new accelerator capabilities, D0 will be able to impose tighter constraints on the mass of the Higgs, and perhaps even detect this elusive particle. If the Higgs does exist, it will be extremely difficult to find. One of the main challenges at a hadron-hadron collider is to reduce the large QCD background that masks the …