The Institute for Multiscale Modeling of Biological Interactions (IMMBI) has two primary goals: Foster interdisciplinary collaborations among faculty and their research laboratories that will lead to novel applications of multiscale simulation and modeling methods in the biological sciences and engineering; and Building on the unique biophysical/biology-based engineering foundations of the participating faculty, train scientists and engineers to apply computational methods that collectively span multiple time and length scales of biological organization. The success of IMMBI will be defined by the following: Size and quality of the applicant pool for pre-doctoral and post-doctoral fellows; Academic performance; Quality of the pre-doctoral and post-doctoral research; Impact of the research broadly and to the DOE (ASCR program) mission; Distinction of the next career step for pre-doctoral and post-doctoral fellows; and Faculty collaborations that result from IMMBI activities. Specific details about accomplishments during the three years of DOE support for IMMBI have been documented in Annual Progress Reports (April 2005, June 2006, and March 2007) and a Report for a National Academy of Sciences Review (October 2005) that were submitted to DOE on the dates indicated. An overview of these accomplishments is provided.

This pilot scale study evaluated the counting accuracy of two people counting systems that could be used in demand controlled ventilation systems to provide control signals for modulating outdoor air ventilation rates. The evaluations included controlled challenges of the people counting systems using pre-planned movements of occupants through doorways and evaluations of counting accuracies when naive occupants (i.e., occupants unaware of the counting systems) passed through the entrance doors of the building or room. The two people counting systems had high counting accuracy accuracies, with errors typically less than 10percent, for typical non-demanding counting events. However, counting errors were high in some highly challenging situations, such as multiple people passing simultaneously through a door. Counting errors, for at least one system, can be very high if people stand in the field of view of the sensor. Both counting system have limitations and would need to be used only at appropriate sites and where the demanding situations that led to counting errors were rare.

This report addresses the secondary aerosol is an important component of atmospheric fine particles that generally consists of organics, sulfates, and nitrates.

A high explosive pulsed power (HEPP) generator called the Advanced Helical Generator (AHG) has been designed, built, and successfully tested. The AHG incorporates design principles of voltage and current management to obtain a high current and energy gain. Its design was facilitated by the use of modern modeling tools as well as high precision manufacture. The result was a first-shot success. The AHG delivered 16 Mega-Amperes of current and 11 Mega-Joules of energy to a quasi-static 80 nH inductive load. A current gain of 154 times was obtained with a peak exponential rise time of 20 {micro}s. We will describe in detail the design and testing of the AHG.

This is an analytical data report for samples received from the central plateau contractor. The samples were analyzed for iodine-129.

The onset of>1000 years of Younger Dryas cooling, broad-scale extinctions, and the disappearance of the Clovis culture in North America simultaneously occurred 12,900 years ago followed immediately by the appearance of a carbon-rich black layer at many locations. In situ bones of extinct megafauna and Clovis tools occur only beneath this black layer and not within or above it. At the base of the black mat at 9 Clovis-age sites in North America and a site in Belgium numerous extraterrestrial impact markers were found including magnetic grains highly enriched in iridium, magnetic microspherules, vesicular carbon spherules enriched in cubic, hexagonal, and n-type nanodiamonds, glass-like carbon containing Fullerenes and nanodiamonds, charcoal, soot, and polycyclic aromatic hydrocarbons. The same impact markers were found mixed throughout the sediments of 15 Carolina Bays, elliptical depressions along the Atlantic coast, whose parallel major axes point towards either the Great Lakes or Hudson Bay. The magnetic grains and spherules have an unusual Fe/Ti composition similar to lunar Procellarum KREEP Terrane and the organic constituents are enriched in 14C leading to radiocarbon dates often well into the future. These characteristics are inconsistent with known meteorites and suggest that the impact was by a previous unobserved, possibly extrasolar …

The presentation describes Concentrating Photovoltaic power (CPV), why it is important, the associated the opportunities and challenges, and more than 5-dozen companies that are pursuing the approach.

SSL GATEWAY demonstration report of freeezer case lighitng retrofit to LED lighiting in Eugene, OR

Our DOE Biosciences-funded work focused on the fungal cell wall and morphogenesis. We are especially interested in how new cell wall material is targeted to appropriate areas for polar (asymmetric) growth. Polar growth is the only way that filamentous fungi explore the environment to find suitable substrates to degrade. Work funded by this grant has resulted in a total of twenty peer-reviewed publications. In work funded by this grant, we identified nine Aspergillus nidulans temperature-sensitive (ts) mutants that fail to send out a germ tube and show a swollen cell phenotype at restrictive temperature, the swo mutants. In other organisms, a swollen cell phenotype is often associated with misdirected growth or weakened cell walls. Our work shows that several of the A. nidulans swo mutants have defects in the establishment and maintenance of polarity. Cloning of several swo genes by complementation also showed that secondary modification of proteins seems is important in polarity. We also investigated cell wall biosynthesis and branching based on leads in literature from other organisms and found that branching and nuclear division are tied and that the cell wall reorganizes during development. In our most recent work we have focused on gene expression during the shift …

Assess the steady-state flammability level at normal and off-normal ventilation conditions. The hydrogen generation rate was calculated for 177 tanks using the rate equation model. Flammability calculations based on hydrogen, ammonia, and methane were performed for 177 tanks for various scenarios.

This report assesses the steady state flammability level under off normal ventilation conditions in the tank headspace for 28 double-shell tanks (DST) and 149 single shell-tanks (SST) at the Hanford Site. Flammability was calculated using estimated gas release rates, Le Chatelier's rule, and lower flammability limits of fuels in an air mixture. This revision updates the hydrogen generation rate input data for all 177 tanks using waste composition information from the Best Basis Inventory Detail Report (data effective as of August 4,2008). Assuming only barometric breathing, the shortest time to reach 25% of the lower flammability limit is 11 days for DSTs (i.e., tank 241-AZ-10l) and 36 days for SSTs (i.e., tank 241-B-203). Assuming zero ventilation, the shortest time to reach 25% of the lower flammability limit is 10 days for DSTs (i.e., tank 241-AZ-101) and 34 days for SSTs (i.e., tank 241-B-203).

The information and evaluations provided in this report were compiled to address the recurring problem of synthetic sling failure. As safety is the number one priority in all work aspects, a solution must be devised to prevent accidents from occurring. A total of thirteen cases regarding synthetic sling failure were evaluated in order to determine their causes, effects, and preventative measures. From the collected data, it was found that all cases in which the synthetic sling contacted the edge of its load resulted in sling failure. It is required that adequate synthetic sling protection devices be used to protect slings in any lift where the sling comes in direct contact with the edge or corner of its load. However, there are no consensus codes or standards stating the type, material, or purpose of the type of protective device used to protect the sling from being cut. Numerous industry standards and codes provide vague descriptions on how to protect synthetic slings. Without a clear, concise statement of how to protect synthetic slings, it is common for inadequate materials and sling protection devices to be used in an attempt to meet the intent of these requirements. The use of an inadequate sling …

This report described the results of investigation on Task 10 of DOE/ASME Materials NGNP/Generation IV Project based on a contract between ASME Standards Technology, LLC (ASME ST-LLC) and Japan Atomic Energy Agency (JAEA). Task 10 is to Update and Improve Subsection NH -- Alternative Simplified Creep-Fatigue Design Methods. Five newly proposed promising creep-fatigue evaluation methods were investigated. Those are (1) modified ductility exhaustion method, (2) strain range separation method, (3) approach for pressure vessel application, (4) hybrid method of time fraction and ductility exhaustion, and (5) simplified model test approach. The outlines of those methods are presented first, and predictability of experimental results of these methods is demonstrated using the creep-fatigue data collected in previous Tasks 3 and 5. All the methods (except the simplified model test approach which is not ready for application) predicted experimental results fairly accurately. On the other hand, predicted creep-fatigue life in long-term regions showed considerable differences among the methodologies. These differences come from the concepts each method is based on. All the new methods investigated in this report have advantages over the currently employed time fraction rule and offer technical insights that should be thought much of in the improvement of creep-fatigue evaluation procedures. …

The Utility of Social Modeling for Proliferation Assessment project (PL09-UtilSocial) investigates the use of social and cultural information to improve nuclear proliferation assessments, including nonproliferation assessments, Proliferation Resistance (PR) assessments, safeguards assessments, and other related studies. These assessments often use and create technical information about a host State and its posture towards proliferation, the vulnerability of a nuclear energy system (NES) to an undesired event, and the effectiveness of safeguards. This objective of this project is to find and integrate social and technical information by explicitly considering the role of cultural, social, and behavioral factors relevant to proliferation; and to describe and demonstrate if and how social science modeling has utility in proliferation assessment. This report describes a modeling approach and how it might be used to support a location-specific assessment of the PR assessment of a particular NES. The report demonstrates the use of social modeling to enhance an existing assessment process that relies on primarily technical factors. This effort builds on a literature review and preliminary assessment performed as the first stage of the project and compiled in PNNL-18438. [ T his report describes an effort to answer questions about whether it is possible to incorporate social modeling …

Provides a technical analysis showing that the 2006 International Energy Conservation Code contains improvements in energy efficiency compared to its predecessor, the 2003 International Energy Conservation Code. DOE is required by law to issue "determinations" of whether or not new editions of the IECC improve energy efficiency.

Anion exchange with S was performed on ZnO colloidal nanoparticles. The resulting hollow ZnS nanoparticles are crystal whose shape is dictated by the initial ZnO. Crystallographic and elemental analyses provide insight into the mechanism of the anion exchange.

To provide polarized electron-proton collisions of {radical}s = 100 GeV; addition of a 10 GeV electron accelerator to the existing RHIC facility is currently under study. Two design lines are under consideration: a self-polarizing electron ring, and an energy recovery linac. While the latter provides significantly higher luminosities, it is technologically very challenging. We present both design approaches and discuss their advantages and limitations.

Radioactive material packages (DOT Type B) such as the Model 9975 are used to transport Pu-bearing materials. The 9975 package provides double payload containment via nested stainless steel primary (PCV) and secondary (SCV) containment vessels. The containment vessels are closed by a conical plug sealed with dual O-rings (Figure 1) made of Parker Seals compound V0835-75, based on Viton{reg_sign} GLT fluoroelastomer. The outer O-ring is credited as being leaktight per ANSI N14.5 with a leak rate of <1E-07 ref cc/sec. The 9975 package is being used for interim storage in the K-Area Material Storage (KAMS) facility at the Savannah River Site. The aging performance of the O-rings is being studied to provide the storage facility a technical basis for service life prediction and safety analysis.

The implementation in TRANSP of a recent version of TORIC capable of calculating power deposition for HHFW conditions is used to analyze NSTX plasma under different operating conditions. The power deposition profile into the electrons is obtained for high-Te conditions - Te ≤ 5keV - obtained in He and D plasmas with ITB. HHFW heating of NBI-induced H-mode plasmas is discussed. At the RF onset the RF power is divided evenly between the electrons and the fast particles, but as the latter thermalize and the electron density increases, the HHFW power repartition shifts progressively toward the electrons. Power deposition profiles for the electrons and for the fast particles are shown.

Currently, there is considerable confusion within parts of the carbon dioxide capture and storage (CCS) technical and regulatory communities regarding the maturity and commercial readiness of the technologies needed to capture, transport, inject, monitor and verify the efficacy of carbon dioxide (CO2) storage in deep, geologic formations. The purpose of this technical report is to address this confusion by discussing the state of CCS technological readiness in terms of existing commercial deployments of CO2 capture systems, CO2 transportation pipelines, CO2 injection systems and measurement, monitoring and verification (MMV) systems for CO2 injected into deep geologic structures. To date, CO2 has been captured from both natural gas and coal fired commercial power generating facilities, gasification facilities and other industrial processes. Transportation via pipelines and injection of CO2 into the deep subsurface are well established commercial practices with more than 35 years of industrial experience. There are also a wide variety of MMV technologies that have been employed to understand the fate of CO2 injected into the deep subsurface. The four existing end-to-end commercial CCS projects – Sleipner, Snøhvit, In Salah and Weyburn – are using a broad range of these technologies, and prove that, at a high level, geologic CO2 storage …

We will report results of an ongoing project in the Deschutes River Subbasin to describe Pacific lamprey (Lampetra tridentata) life history. Project objectives were to determine adult lamprey escapement from Sherars Falls located at Rkm 70.4 and determine lamprey focal spawning areas, spawn timing and habitat through radio telemetry. A mark-recapture study and tribal creel was conducted to determine adult escapement. Lamprey were radio tagged and are currently being mobile, aerial and fixed site tracked to describe spawning. Adult lamprey were collected at Sherars Falls using a long-handled dip net from June-September 2007. The fate of lamprey collected at Sherars Falls was determined based on girth measurements. Fish measuring less than 10.5 cm received two markings for the mark-recapture estimation while those measuring 10.5 cm or greater were implanted with radio transmitters. Two-hundred and nine lamprey were marked during first event sampling, 2,501 lamprey inspected for marks and 64 recaptured during second event sampling. We estimate lamprey abundance to be 8,083 (6,352-10,279) with a relative precision of 19.8. Tribal harvest was 2,303 +/- 88. Escapement was estimated at 5,780 adult lamprey. Thirty-six lamprey received radio transmitters. Lamprey were transported upstream 6.3 Rkm for surgery, held to recover from anesthesia and …

A previous study by one of the present authors, together with D. Borwein and I. Leonard [8], studied the asymptotic behavior of the p-norm of the sinc function: sinc(x) = (sin x)/x and along the way looked at closed forms for integer values of p. In this study we address these integrals with the tools of experimental mathematics, namely by computing their numerical values to high precision, both as a challenge in itself, and also in an attempt to recognize the numerical values as closed-form constants. With this approach, we are able to reproduce several of the results of [8] and to find new results, both numeric and analytic, that go beyond the previous study.

One of the most effective techniques of experimental mathematics is to compute mathematical entities such as integrals, series or limits to high precision, then attempt to recognize the resulting numerical values. Recently these techniques have been applied with great success to problems in mathematical physics. Notable among these applications are the identification of some key multi-dimensional integrals that arise in Ising theory, quantum field theory and in magnetic spin theory.

Viscosities of water, nitrogen and carbon dioxide have been measured at elevated pressures and temperatures in the diamond-anvil cell. A strong correlation between viscosity and entropy has been confirmed.