The Lawrence Livermore National Laboratory (LLNL) and the Sandia National Laboratory (SNL) are located at the eastern end of the City of Livermore. Recently the research facilities have been placed on heightened security alerts due to the events of September 11. To respond to the security concerns, LLNL and SNL have proposed to place East Avenue between South Vasco Road and Greenville Road under administrative control. This type of control would require security check points at both ends of this segment of East Avenue, including a truck inspection facility west of the Greenville Road intersection. In this configuration, East Avenue would be closed to general public traffic. The purpose of this traffic study is to determine the potential traffic impact of placing East Avenue under administrative control. The primary focus of the traffic study is to evaluate the proposed modifications to the geometry and operation of East Avenue between South Vasco Road and Greenville Road. The study also includes a review of a traffic study prepared for the closure of East Avenue in 1989 to determine if the assumptions and conclusions of that study remain valid.

The anthrax letters event of 2001 has raised our awareness of the potential importance of non-biological measurements on samples of biological agents used in a terrorism incident. Such measurements include a variety of mass spectral, spectroscopic, and other instrumental techniques that are part of the current armamentarium of the modern materials analysis or analytical chemistry laboratory. They can provide morphological, trace element, isotopic, and other molecular ''fingerprints'' of the agent that may be key pieces of evidence, supplementing that obtained from genetic analysis or other biological properties. The generation and interpretation of such data represents a new domain of forensic science, closely aligned with other areas of ''microbial forensics''. This paper describes some major elements of the R&D agenda that will define this sub-field in the immediate future and provide the foundations for a coherent national capability. Data from chemical and physical analysis of BW materials can be useful to an investigation of a bio-terror event in two ways. First, it can be used to compare evidence samples collected at different locations where such incidents have occurred (e.g. between the powders in the New York and Washington letters in the Amerithrax investigation) or between the attack samples and those seized …

Revision 1 of this document presented a method of calculating the CFF explosive firing zones that was based upon the peak average pressure on the various elements of the firing chamber as explosive weights and locations are changed. That document was reviewed internally at LLNL and reviewed by the design contractor of the facility. The contractor's responses generally confirmed the validity of the peak average pressure method, but noted that the shearing stresses at haunches may exceed the design values when explosive charges are moved towards comers. The concept of a dynamic load factor is introduced in the dynamic analysis section of Reference 5. A method is shown there whereby the response of the major elements of construction can be calculated from the knowledge of the peak average blast pressure averaged over the surface considered. the length of the pulse, and the natural period of vibration of the element. Quazi Hossain also suggested this method of analysis in Reference 2. The major elements of the Firing Chamber are the four walls, floor, roof slab, camera room overlay structure, inclined plate, bullnose, and the two doors. Except for the bullnose, their response has been calculated for a number of explosive weights …

The purpose of this memo is to lay out the uncertainties associated with the measurement of density of Be ablators by the weigh and volume method. I am counting on the readers to point out any faulty assumptions about the techniques or uncertainties associated with them. Based on the analysis presented below we should expect that 30 {micro}m thick shells will have an uncertainty in the measured density of about 2% of the value, coming more or less equally from the mass and volume measurement. The uncertainty is roughly inversely proportional to the coating thickness, thus a 60 {micro}m walled shell would result in a 1% uncertainty in the density.

We demonstrate the application code ''rap'' which is part of the ''Overture'' library. A CAD geometry imported from an IGES file is first cleaned up and simplified to suit the needs of mesh generation. Thereafter, the topology of the model is computed and a water-tight surface triangulation is created on the CAD surface. This triangulation is used to speed up the projection of points onto the CAD surface during the generation of overlapping surface grids. From each surface grid, volume grids are grown into the domain using a hyperbolic marching procedure. The final step is to fill any remaining parts of the interior with background meshes.

In an effort to determine spill characteristics, information about a spill's spatial distribution with time is being studied. For permeable surfaces, spill phenomenology is controlled by liquid and soil properties, the most relevant of which are presented in this report. The pertinent liquid and soil properties were tabulated for ten liquids and four soils. The liquids represented an array of organic compounds, some of which are or are soon to be documented in the liquid spectra library by the Environmental Molecular Science Laboratory at Pacific Northwest National Laboratory. The soils were chosen based on ongoing surface spectra work and to represent a range of relevant soil properties. The effect of the liquid and soil properties on spill phenomenology were explored using a spill model that couples overland flow described by gravity currents with the Green-Ampt infiltration model. From the simulations, liquid viscosity was found to be a controlling liquid property in determining the amount of time a spill remains on the surface, with the surface vanish time decreasing as viscosity decreased. This was attributed to decreasing viscosity increasing both the hydraulic conductivity of the soil and allowing for the spill to more quickly spread out onto an unsaturated soil surface. …

The objective of the study was to compare water temperatures in the Lower Snake River for current (impounded) and unimpounded conditions using a mathematical model of the river system. A long-term analysis was performed using the MASS1 one-dimensional (1D) hydrodynamic and water quality model. The analysis used historical flows and meteorological conditions for a 35-year period spanning between 1960 and 1995. Frequency analysis was performed on the model results to calculate river temperatures at various percent of time exceeded levels. Results were are also analyzed to compute the time when, during the year, water temperatures rose above or fell below various temperature levels. The long-term analysis showed that the primary difference between the current and unimpounded river scenarios is that the reservoirs decrease the water temperature variability. The reservoirs also create a thermal inertia effect which tends to keep water cooler later into the spring and warmer later into the fall compared to the unimpounded river condition. Given the uncertainties in the simulation model, inflow temperatures, and meteorological conditions the results show only relatively small differences between current and unimpounded absolute river temperatures.

In this report, we summarize our plan for using NIF for measuring solid-state deformation physics at very high pressures, P >> 1 Mbar. There are several key uncertainties, the strength and phase being two of them. The deformation mechanisms at high pressure and high strain rate are also uncertain. The state, as well as strength, of a material that has first been melted, then dynamically refrozen by high-pressure compression is very uncertain. There is no single facility that can address all of these issues at all parameter regimes of interest. Rather, a coordinated plan involving multiple laboratories and universities and multiple facilities will ultimately be needed. We present here our first thoughts for the NIF component of this effort. In Sec. I, we motivate the physics of this regime, and point out the uncertainties, then describe in Sec. II the development work that we have done over the last 5 years in this area. In Sec. III, we describe several NIF designs we have developed to probe solid-state deformation physics at very high pressures.

The Helmholtz machine provides what may be the best existing model for how the mammalian brain recognizes patterns. Based on the observation that the ''wake-sleep'' algorithm for training a Helmholtz machine is similar to the problem of finding the potential for a multi-channel Schrodinger equation, we propose that the construction of a Schrodinger potential using inverse scattering methods can serve as a model for how the mammalian brain learns to extract essential information from sensory data. In particular, inverse scattering theory provides a conceptual framework for imagining how one might use EEG and MEG observations of brain-waves together with sensory feedback to improve human learning and pattern recognition. Longer term, implementation of inverse scattering algorithms on a digital or optical computer could be a step towards mimicking the seamless information fusion of the mammalian brain.

In radiation shielding applications we need photon and electron data, as well as computer codes that utilize these data, in order to predict results inexpensively and safely. In this paper we will first cover the current status of available photon and electron data that have only recently been adopted for inclusion in ENDF/B-VI, with emphasis on the improved detail that is included in these data bases. Next we will cover the availability of these data bases and computer codes that use them.

Mycobacterium tuberculosis, the cause of TB, is a devastating human pathogen. The emergence of multi-drug resistance in recent years has prompted a search for new drug targets and for a better understanding of mechanisms of resistance. Here we focus on the gene product of an open reading frame from M. tuberculosis, Rv1347c, which is annotated as a putative aminoglycoside N-acetyltransferase. The Rv1347c protein does not show this activity, however, and we show from its crystal structure, coupled with functional and bioinformatic data, that its most likely role is in the biosynthesis of mycobactin, the M. tuberculosis siderophore. The crystal structure of Rv1347c was determined by MAD phasing from selenomethionine-substituted protein and refined at 2.2 {angstrom} resolution (R = 0.227, R{sub free} = 0.257). The protein is monomeric, with a fold that places it in the GCN5-related N-acetyltransferase (GNAT) family of acyltransferases. Features of the structure are an acylCoA binding site that is shared with other GNAT family members, and an adjacent hydrophobic channel leading to the surface that could accommodate long-chain acyl groups. Modeling the postulated substrate, the N{sup {var_epsilon}}-hydroxylysine side chain of mycobactin, into the acceptor substrate binding groove identifies two residues at the active site, His130 and Asp168, …

Transparent ceramic materials have several major advantages over single crystals in laser applications, not the least of which is the ability to make large aperture parts in a robust manufacturing process. After more than a decade of working on making transparent YAG:Nd, Japanese workers have recently succeeded in demonstrating samples that performed as laser gain media as well as their single crystal counterparts. Since then several laser materials have been made and evaluated. For these reasons, developing ceramic laser materials is the most exciting and futuristic materials topic in today's major solid-state laser conferences. We have established a good working relationship with Konoshima Ltd., the Japanese producer of the best ceramic laser materials, and have procured and evaluated slabs designed by us for use in our high-powered SSHCL. Our measurements indicate that these materials will work in the SSHCL, and we have nearly completed retrofitting the SSHCL with four of the largest transparent ceramic YAG:Nd slabs in existence. We have also begun our own effort to make this material and have produced samples with various degrees of transparency/translucency. We are in the process of carrying out an extensive design-of-experiments to establish the significant process variables for making transparent YAG. Finally …

The National Ignition Facility will be the largest laser system in the world. The facility, currently under construction, requires over 25,000 small optical components. The small-optics requirements and latest procurement strategy will be presented.

Colloids have the potential to transport strongly sorbing radionuclide contaminants in soils and groundwater aquifers. Recent studies from the Nevada Test Site have indicated the enhanced mobility plutonium, albeit in minute quantities, associated with various silicate minerals (Kersting et al., 1999); however, significant colloidal transport of thorium (Th) and rare earths (RE) in nature, considered to be chemical analogs for plutonium, is rare. Yet, the current Yucca Mountain model for colloids would have predicted extensive Th- and RE migration, given these phases' association with clay minerals. Several studies have pointed to the effect of water flow rate on colloid and particulate migration. In this paper, we examine the benefit of relating water flow rate and the wasteform alteration structure to colloid release.

On September 15, 2005, the House of Representatives approved H. Res. 437, which created the Select Bipartisan Committee to Investigate the Preparation for and Response to Hurricane Katrina (“the Select Committee”). According to the resolution, the Committee was charged with conducting “a full and complete investigation and study and to report its findings to the House not later than February 15, 2006, regarding— (1) the development, coordination, and execution by local, State, and Federal authorities of emergency response plans and other activities in preparation for Hurricane Katrina; and (2) the local, State, and Federal government response to Hurricane Katrina.” The Committee presents the report narrative and the findings that stem from it to the U.S. House of Representatives and the American people for their consideration. Members of the Select Committee agree unanimously with the report and its findings. Other Members of Congress who participated in the Select Committee’s hearings and investigation but were not official members of the Select Committee, while concurring with a majority of the report’s findings, have presented additional views as well, which we offer herein on their behalf. First and foremost, this report is issued with our continued thoughts and prayers for Katrina’s victims. Their families. …

This report summarizes the work performed by the Energy & Environmental Research Center (EERC) under the U.S. Department of Energy Jointly Sponsored Research Program JV Task 92, which is a continuation of JV9. Successful studies performed in 1999 through the end of 2008 demonstrated the potential for using selective supercritical fluid extraction (SFE) and a solid-phase microextraction (SPME) method for measuring sediment pore water polycyclic aromatic hydrocarbons (PAHs) to mimic the bioavailability of PAHs from manufactured gas plant and aluminum smelter soils and sediments both in freshwater and saltwater locations. The studies that the EERC has performed with the commercial partners have continued to generate increased interest in both the regulatory communities and in the industries that have historically produced or utilized coal tar products. Both ASTM International and the U.S. Environmental Protection Agency (EPA) have accepted the pore water method developed at the EERC as standard methods. The studies have demonstrated the effectiveness of our techniques in predicting bioavailability of PAHs from ca. 250 impacted and background field sediments and soils. The field demonstrations from the final years of the project continued to build the foundation data for acceptance of our methods by the regulatory communities. The JV92 studies …

This note is a document about dimensions and measurement results of waveguide-coax launchers (Band 1 and 2) installed on the arrays in debuncher cooling upgrade. Shown in Figure 1, 5, 8 and 12 are schematic drawings of launchers in the cross section along the longitudinal direction (beam direction) of the arrays. The unit in these drawings is inch. Note: although there are upper band and lower band for pickup arrays, the launchers are the same to avoid possible confusion during installation. RF Measurements were made on all launchers (port) and printed in hard copies for future reference. Since the measurement results are similar to each other, only a few plots for each type of launcher/band are presented in this document. There are two types of measured S11 parameters. One is the measurement made at the end of design/tuning stage using a straight section of band 1 or 2 waveguide terminated with a cone of absorber. I use 'Original' to denote this kind of measurement. As shown in Figure 2, 6, 9 and 13, the original S11 of all launchers are below or around - 20 db over the full band 1 or 2. The other type of measurement is the …

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Methane from oil shale can potentially provide a significant contribution to natural gas industry, and it may be possible to increase and continue methane production by artificially enhancing methanogenic activity through the addition of various substrate and nutrient treatments. Western Research Institute in conjunction with Pick & Shovel Inc. and the U.S. Department of Energy conducted microcosm and scaled-up reactor studies to investigate the feasibility and optimization of biogenic methane production from oil shale. The microcosm study involving crushed oil shale showed the highest yield of methane was produced from oil shale pretreated with a basic solution and treated with nutrients. Incubation at 30 C, which is the estimated temperature in the subsurface where the oil shale originated, caused and increase in methane production. The methane production eventually decreased when pH of the system was above 9.00. In the scaled-up reactor study, pretreatment of the oil shale with a basic solution, nutrient enhancements, incubation at 30 C, and maintaining pH at circumneutral levels yielded the highest rate of biogenic methane production. From this study, the annual biogenic methane production rate was determined to be as high as 6042 cu. ft/ton oil shale.

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We present a new lock-free parallel algorithm for computing betweenness centralityof massive small-world networks. With minor changes to the data structures, ouralgorithm also achieves better spatial cache locality compared to previous approaches. Betweenness centrality is a key algorithm kernel in HPCS SSCA#2, a benchmark extensively used to evaluate the performance of emerging high-performance computing architectures for graph-theoretic computations. We design optimized implementations of betweenness centrality and the SSCA#2 benchmark for two hardware multithreaded systems: a Cray XMT system with the Threadstorm processor, and a single-socket Sun multicore server with the UltraSPARC T2 processor. For a small-world network of 134 million vertices and 1.073 billion edges, the 16-processor XMT system and the 8-core Sun Fire T5120 server achieve TEPS scores (an algorithmic performance count for the SSCA#2 benchmark) of 160 million and 90 million respectively, which corresponds to more than a 2X performance improvement over the previous parallel implementations. To better characterize the performance of these multithreaded systems, we correlate the SSCA#2 performance results with data from the memory-intensive STREAM and RandomAccess benchmarks. Finally, we demonstrate the applicability of our implementation to analyze massive real-world datasets by computing approximate betweenness centrality for a large-scale IMDb movie-actor network.

Topological transitions in bubbling half-BPS Type IIB geometries with SO(4) x SO(4) symmetry can be decomposed into a sequence of n elementary transitions. The half-BPS solution that describes the elementary transition is seeded by a phase space distribution of fermions filling two diagonal quadrants. We study the geometry of this solution in some detail. We show that this solution can be interpreted as a time dependent geometry, interpolating between two asymptotic pp-waves in the far past and the far future. The singular solution at the transition can be resolved in two different ways, related by the particle-hole duality in the effective fermion description. Some universal features of the topology change are governed by two-dimensional Type 0B string theory, whose double scaling limit corresponds to the Penrose limit of AdS_5 x S5 at topological transition. In addition, we present the full class of geometries describing the vicinity of the most general localized classical singularity that can occur in this class of half-BPS bubbling geometries.

The purpose of this report is to provide a concise but comprehensive overview of Atmospheric Radiation Measurement Climate Research Facility instrumentation status. The report is divided into the following five sections: (1) new instrumentation in the process of being acquired and deployed, (2) field campaigns, (3) existing instrumentation and progress on improvements or upgrades, (4) proposed future instrumentation, and (5) Small Business Innovation Research instrument development.

We compared the Arthrobacter chlorophenolicus proteome during growth on 4-chlorophenol, 4-nitrophenol or phenol at 5 C and 28 C; both for the wild type and a mutant strain with mass spectrometry based proteomics. A label free workflow employing spectral counting identified 3749 proteins across all growth conditions, representing over 70% of the predicted genome and 739 of these proteins form the core proteome. Statistically significant differences were found in the proteomes of cells grown under different conditions including differentiation of hundreds of unknown proteins. The 4-chlorophenol-degradation pathway was confirmed, but not that for phenol.