Identifying transcriptional regulatory elements represents a significant challenge in annotating the genomes of higher vertebrates. We have developed a computational tool, rVISTA, for high-throughput discovery of cis-regulatory elements that combines transcription factor binding site prediction and the analysis of inter-species sequence conservation. Here, we illustrate the ability of rVISTA to identify true transcription factor binding sites through the analysis of AP-1 and NFAT binding sites in the 1 Mb well-annotated cytokine gene cluster1 (Hs5q31; Mm11). The exploitation of orthologous human-mouse data set resulted in the elimination of 95 percent of the 38,000 binding sites predicted upon analysis of the human sequence alone, while it identified 87 percent of the experimentally verified binding sites in this region.

A facility effluent monitoring plan is required by the U.S. Department of Energy in Order 5400.1 for any operations that involve hazardous materials and radioactive substances that could impact employee public safety, or the environment. This facility effluent monitoring plan assesses effluent monitoring systems and evaluates whether these systems are adequate to ensure the public health and safety as specified in applicable federal, state, and local requirements. This facility effluent monitoring plan ensures long-range integrity of the effluent monitoring systems by requiring an update whenever a new process or operation introduces new hazardous materials or significant radioactive materials. This document must be reviewed annually even if there are no operational changes, and must be updated, as a minimum, every 3 years.

Ferroelectric plasma sources in vacuum are known as sources of ablative plasma, formed due to surface discharge. In this paper, observations of a gas discharge mode of operation of the ferroelectric plasma sources (FPS) are reported. The gas discharge appears at pressures between approximately 20 and approximately 80 Torr. At pressures of 1-20 Torr, there is a transition from vacuum surface discharge to the gas discharge, when both modes coexist and the surface discharges sustain the gas discharge. At pressures between 20 and 80 Torr, the surface discharges are suppressed, and FPS operate in pure gas discharge mode, with the formation of almost uniform plasma along the entire surface of the ceramics between strips. The density of the expanding plasma is estimated to be about 1013 cm-3 at a distance of 5.5 mm from the surface. The power consumption of the discharge is comparatively low, making it useful for various applications. This paper also presents direct measurements of the yield of secondary electron emission from ferroelectric ceramics, which, at low energies of primary electrons, is high and dependent on the polarization of the ferroelectric material

The interactions of N2O with H-ZSM-5 and Fe-ZSM-5 have been investigated using infrared spectroscopy and temperature-programmed reaction. Fe-ZSM-5 samples with Fe/Al ratios of 0.17 and 0.33 were prepared by solid-state exchange. It was determined that most of the iron in the samples of Fe-ZSM-5 is in the form of isolated cations, which have exchanged with Bronsted acid H+ in H-ZSM-5. The infrared spectrum of N2O adsorbed on H-ZSM-5 at 298 K exhibits bands at 2226 and 1308 cm-1 associated with vibrations of the N-N and N-O bonds, respectively. The positions of these bands relative to those seen in the gas phase suggest that N2O adsorbs through the nitrogen end of the molecule. The heat of N2O adsorption in H-ZSM-5 is estimated to be 5 kcal/mol. In the case of Fe-ZSM-5, additional infrared bands are observed at 2282 and 1344 cm-1 due to the interactions of N2O with the iron cations. Here too, the directions of the shifts in the vibrational features relative to those for gas-phase N2O suggest that the molecule adsorbs through its nitrogen end. The heat of adsorption of N2O on the Fe sites is estimated to be 16 kcal/mol. The extent of N2O adsorption on Fe depends …

During the 2nd half of Year I, we continued the development of the microporous ceramic layer as a transition layer for the deposition of the carbon molecular sieve membrane on the stainless steel substrate offered by Pall Corp. Based upon the positive result from the feasibility study conducted in the 1st half of Year I, our activities in this period focused on eliminating the high pore size peak and the minimization of defect. A microporous ceramic layer with 40A pore size and <1% initial flow have been successfully prepared. Further, this modified membrane has demonstrated excellent thermal stability, <1% initial flow after the 5 thermal cycles. In addition we began the CMS layer deposition on the AccuSep with the ceramic transition layer. The CMS membranes fired at the low temperature range demonstrate an excellent hydrogen permeance, up to >5 m{sup 3}/m{sup 2}/hr/bar, with the selectivity of {approx}20 for H{sub 2}/N{sub 2}. The extremely high permeance is indicative of the extremely thin CMS membrane layer, which becomes possible as a result of the uniform and defect free transition layer. This could be an ideal membrane for hydrogen recovery applications where the hydrogen permeance is the primary concern. Presently we are actively …

This project develops Fuel-Flexible Reburning (FFR), which combines conventional reburning and Advanced Reburning (AR) technologies with an innovative method of delivering coal as the reburning fuel. The FFR can be retrofit to existing boilers and can be configured in several ways depending on the boiler, coal characteristics, and NO{sub x} control requirements. Fly ash generated by the technology will be a saleable byproduct for use in the cement and construction industries. FFR can also reduce NO{sub x} by 60%-70%, achieving an emissions level of 0.15 lb/10{sup 6} Btu in many coal-fired boilers equipped with Low NO{sub x} Burners. Total process cost is expected to be one third to one half of that for Selective Catalytic Reduction (SCR). Activities during reporting period included design, manufacture, assembly, and shake down of the coal gasifier and pilot-scale testing of the efficiency of coal gasification products in FFR. Tests were performed in a 300 kW Boiler Simulator Facility. Several coals with different volatiles content were tested. Data suggested that incremental increase in the efficiency of NO{sub x} reduction due to the gasification was more significant for less reactive coals with low volatiles content. Experimental results also suggested that the efficiency of NO{sub x} reduction …

The objective of this work was to develop predictive models for the Low Activity Waste (LAW) melter offgas flammability assessment and to conduct case studies in support of the on-going safety analysis efforts for the River Protection Project Waste Treatment Plant (RPPWTP). This required that Savannah River Technology Center (SRTC) personnel develop process models that are comprehensive enough to explicitly describe the effects of key melter operating variables such as total organic carbon (TOC) in the feed, melter air purge, and vapor space temperature on the offgas flammability.

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A new method to implement low-noise collision operators in particle-in-cell simulations is presented. The method is based on the fact that relevant collision operators can be included naturally in the Lagrangian formulation that exemplifies the particle-in-cell simulation method. Numerical simulations show that the momentum and energy conservation properties of the simulated plasma associated with the low-noise collision operator are improved as compared with standard collision algorithms based on random numbers.

This report summarizes the work done during the fifth quarter of the project. Effort was directed in two areas: (1) Further development of the model on the role of connectivity on ionic conductivity of porous bodies, including the role of grain boundaries and space charge region. (2) Fabrication of porous samaria-doped ceria (SDC) and investigation of the effect of thermal treatment on its conductivity. The model developed accounts for transport through three regions: (a) Transport through the bulk of the grain, RI, which includes parallel transport through space charge region. (b) Transport through the space charge region adjacent to the neck (grain boundary), RII. (c) Transport through the structural part of the neck (grain boundary), RIII. The work on the model development involves calculation RI, RII, RIII, and the sum of these three terms, which is the total resistance, as a function of the grain radius ranging between 0.5 and 5 microns and as a function of the relative neck size, described in terms of the angle theta, ranging between 5 and 45{sup o}. Three values of resistivity of the space charge region were chosen; space charge resistivity greater than grain resistivity, equal to grain resistivity, and lower than grain …

The purpose of this assumptions document is to provide general scope, strategy, technical basis, schedule and cost assumptions for the Monitored Geologic Repository (MGR) life cycle cost estimate and schedule update incorporating information from the Viability Assessment (VA), License Application Design Selection (LADS), 1999 Update to the Total System Life Cycle Cost (TSLCC) estimate and from other related and updated information. This document is intended to generally follow the assumptions outlined in the previous MGR cost estimates and as further prescribed by DOE guidance.

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The purpose of this report is to identify and document the nuclear safety design requirements that are specific to structures, systems, and components (SSCs) of the repository that are important to safety (ITS) during the preclosure period and to support the preclosure safety analysis and the license application for the high-level radioactive waste (HLW) repository at Yucca Mountain, Nevada. The scope of this report includes the assignment of nuclear safety design requirements to SSCs that are ITS and does not include the assignment of design requirements to SSCs or natural or engineered barriers that are important to waste isolation (ITWI). These requirements are used as input for the design of the SSCs that are ITS such that the preclosure performance objectives of 10 CFR 63.111 [DIRS 156605] are met. The natural or engineered barriers that are important to meeting the postclosure performance objectives of 10 CFR 63.113 [DIRS 156605] are identified as ITWI. Although a structure, system, or component (SSC) that is ITS may also be ITWI, this report is only concerned with providing the nuclear safety requirements for SSCs that are ITS to prevent or mitigate event sequences during the repository preclosure period.

Argonne performs research and development in many areas of science and technology. General fields of research at Argonne include, but are not limited to, biosciences, biotechnology, chemical engineering, chemistry, decision and information sciences, energy systems and technology, high energy physics, materials science, math and computer science, nuclear reactors, physics, and environmental science. Argonne is not, and never has been, a weapons laboratory. Several missions provide focus for Argonne scientists. Basic research helps better understand the world, and applied research helps protect and improve it. For example, the prairies of Argonne provide sites for environmental studies that provide valuable information about invader species and the food webs within ecosystems. Argonne also operates world-class research facilities, such as the Advanced Photon Source (APS), which is a national research facility funded by the U.S. Department of Energy (DOE). Scientists use high brilliance X-rays from the APS for basic and applied research in many fields. Argonne also seeks to ensure our energy future. Currently, scientists and engineers are developing cleaner and more efficient energy sources, such as fuel cells and advanced electric power generation. Argonne has spent much of its history on developing nuclear reactor technology. That research is now being applied to American …

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The purpose of this Analysis/Model Report (AMR) is to document natural and anthropogenic (human-induced) analog sites and processes that are applicable to flow and transport processes expected to occur at the potential Yucca Mountain repository in order to build increased confidence in modeling processes of Unsaturated Zone (UZ) flow and transport. This AMR was prepared in accordance with ''AMR Development Plan for U0135, Natural Analogs for the UZ'' (CRWMS 1999a). Knowledge from analog sites and processes is used as corroborating information to test and build confidence in flow and transport models of Yucca Mountain, Nevada. This AMR supports the Unsaturated Zone (UZ) Flow and Transport Process Model Report (PMR) and the Yucca Mountain Site Description. The objectives of this AMR are to test and build confidence in the representation of UZ processes in numerical models utilized in the UZ Flow and Transport Model. This is accomplished by: (1) applying data from Boxy Canyon, Idaho in simulations of UZ flow using the same methodologies incorporated in the Yucca Mountain UZ Flow and Transport Model to assess the fracture-matrix interaction conceptual model; (2) Providing a preliminary basis for analysis of radionuclide transport at Pena Blanca, Mexico as an analog of radionuclide transport …

Radioactive waste is stored in underground storage tanks at the Department of Energy (DOE) Savannah River Site (SRS). The waste tanks store supernatant liquid salts, consisting primarily of sodium nitrate, sodium nitrite, sodium hydroxide, and sludge. An assessment of the potential degradation mechanisms of the high level waste (HLW) tanks determined that nitrate- induced pitting corrosion and stress corrosion cracking were the two most significant degradation mechanisms. Controls on the solution chemistry (minimum nitrite and hydroxide concentrations) are in place to prevent the initiation and propagation of pitting and stress corrosion cracking in the tanks. These controls are based upon a series of experiments performed using simulated solutions on materials used for construction of the tanks. The technical bases and evolution of these controls is presented.

This report provides a section-by-section summary of the provisions of the Energy Policy Act of 2005. Discussions of legislative background and policy implications are provided for bill titles and subtitles that address unified programs or policy areas.

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This report provides a summary of major provisions of federal law and a chronology of key legislative and judicial actions.

This report discusses the process of amending bills in the Senate.

This report provides historical background on the enactment of declarations of war and authorizations for the use of force and analyzes their legal effects under international and domestic law. The report concludes with a summary of the congressional procedures applicable to the enactment of a declaration of war or authorization for the use of force and to measures under the War Powers Resolution.