Protein-folding via divide-and-conquer optimization (open access)

Protein-folding via divide-and-conquer optimization

None
Date: July 11, 2004
Creator: Oliva, Ricardo; Crivelli, Silvia & Meza, Juan
Object Type: Article
System: The UNT Digital Library
Asymmetric injection of cathodic arc plasma into a macroparticlefilter (open access)

Asymmetric injection of cathodic arc plasma into a macroparticlefilter

The cathodic arc plasmas produced by cathode spots usuallyinclude macroparticles, which is undesirable for many applications. Acommon way of removing macroparticles is to use curved solenoid filterswhich guide the plasma from the source to the substrate. In this work, anarc source with relatively small cathode is used, limiting the possiblelocations of plasma production. The relative position of cathodic arcsource and macroparticle filtered was systematically varied and thefiltered plasma current was recorded. It was found that axis-symmetricplasma injection leads to maximum throughput only if an anode aperturewas used, which limited the plasma to near-axis flow by scraping offplasma at larger angles to the axis. When the anode aperture was removed,more plasma could enter the filter. In this case, maximum filtered ioncurrent was achieved when the plasma was injected off-axis, namely offsetin the direction where the filter is curved. Such behavior wasanticipated because the plasma column in the filter is known to beshifted by ExB and centrifugal drift as well as by non-axis-symmetriccomponents of the magnetic field in the filter entrance and exit plane.The data have implications for plasma transport variations caused bydifferent spot locations on cathodes that are not small compared to thefilter cross section.
Date: February 11, 2004
Creator: Anders, Andre & MacGill, Robert A.
Object Type: Article
System: The UNT Digital Library
Emerging Energy-Efficient Technologies in Buildings Technology Characterizations for Energy Modeling (open access)

Emerging Energy-Efficient Technologies in Buildings Technology Characterizations for Energy Modeling

The energy use in America's commercial and residential building sectors is large and growing. Over 38 quadrillion Btus (Quads) of primary energy were consumed in 2002, representing 39% of total U.S. energy consumption. While the energy use in buildings is expected to grow to 52 Quads by 2025, a large number of energy-related technologies exist that could curtail this increase. In recent years, improvements in such items as high efficiency refrigerators, compact fluorescent lights, high-SEER air conditioners, and improved building shells have all contributed to reducing energy use. Hundreds of other technology improvements have and will continue to improve the energy use in buildings. While many technologies are well understood and are gradually penetrating the market, more advanced technologies will be introduced in the future. The pace and extent of these advances can be improved through state and federal R&D. This report focuses on the long-term potential for energy-efficiency improvement in buildings. Five promising technologies have been selected for description to give an idea of the wide range of possibilities. They address the major areas of energy use in buildings: space conditioning (33% of building use), water heating (9%), and lighting (16%). Besides describing energy-using technologies (solid-state lighting and geothermal …
Date: October 11, 2004
Creator: Hadley, SW
Object Type: Report
System: The UNT Digital Library
Multi-Tube Power Leads Tower for Bepcii Ir Magnets. (open access)

Multi-Tube Power Leads Tower for Bepcii Ir Magnets.

A power lead tower containing the multi-tube power leads is designed and under fabrication for the superconducting IR quadrupole magnets in the Beijing Electron Position Collider Upgrade (BEPCII). The lead tower consists of six pairs of gas-cooled leads for seven superconducting coils at various operating currents. The power lead is designed in a modular fashion, which can be easily applied to suit different operating current. The end copper block of the tube lead has a large cold mass that provide a large time constant in case of cooling flow interruption. A novel cryogenic electrical isolator is used for the leads.
Date: May 11, 2004
Creator: Jia, L. X.; Zhang, X. B.; Wang, L.; Wang, T. H. & Yao, Z. L.
Object Type: Article
System: The UNT Digital Library
Speckle Imaging of Titan at 2 microns: Surface Albedo, Haze Optical Depth, and Tropospheric Clouds 1996-1998 (open access)

Speckle Imaging of Titan at 2 microns: Surface Albedo, Haze Optical Depth, and Tropospheric Clouds 1996-1998

We present results from 14 nights of observations of Titan in 1996-1998 using near-infrared (centered at 2.1 microns) speckle imaging at the 10-meter W.M. Keck Telescope. The observations have a spatial resolution of 0.06 arcseconds. We detect bright clouds on three days in October 1998, with a brightness about 0.5% of the brightness of Titan. Using a 16-stream radiative transfer model (DISORT) to model the central equatorial longitude of each image, we construct a suite of surface albedo models parameterized by the optical depth of Titan's hydrocarbon haze layer. From this we conclude that Titan's equatorial surface albedo has plausible values in the range of 0-0.20. Titan's minimum haze optical depth cannot be constrained from this modeling, but an upper limit of 0.3 at this wavelength range is found. More accurate determination of Titan's surface albedo and haze optical depth, especially at higher latitudes, will require a model that fully considers the 3-dimensional nature of Titan's atmosphere.
Date: February 11, 2004
Creator: Gibbard, S. G.; Gavel, D.; Ghez, A. M.; de Pater, I.; Max, C. E.; Young, E. F. et al.
Object Type: Article
System: The UNT Digital Library
Letter to the Editors of Physics Today (open access)

Letter to the Editors of Physics Today

Two points in our recent article on Edward Teller's scientific life (Physics Today, August 2004, page 45) require correction. In our description of Teller's students, we incorrectly stated that Arthur Kantrowitz's thesis was on the generation of hypersonic molecular beams. Actually, his thesis was on heat capacity lags in gas dynamics. Kantrowitz's invention of high intensity sources for molecular beams came later in his career. Maurice Goldhaber has emphasized that the situation with respect to possible nuclear resonances in ({gamma},n) or ({gamma},fission) reactions was quite unclear at the time of George C. Baldwin and G. Stanley Klaiber's papers on these reactions. This was because the rapid rise of their yield to a prominent peak with increasing energy, followed by a slower fall off was then thought to have been due to the competition between the rapidly rising density of nuclear states and the eventual domination of other reaction channels at higher energies. Goldhaber realized, however, that there could be an analogy between a possible collective nuclear resonance and the restrahl resonance (essentially the transverse optical phonon mode) in polar crystals. Goldhaber sought out Teller because of his paper with Russell Lyddane and Robert Sachs, relating the restrahl frequency to the …
Date: November 11, 2004
Creator: Libby, S B & Weiss, M S
Object Type: Article
System: The UNT Digital Library
Example Programs for KINSOL v2.2.0 (open access)

Example Programs for KINSOL v2.2.0

None
Date: November 11, 2004
Creator: Collier, A M & Serban, R
Object Type: Text
System: The UNT Digital Library
Thermal Fluid Modeling of Bepcii Ir Quadrupole Magnet Cryostat. (open access)

Thermal Fluid Modeling of Bepcii Ir Quadrupole Magnet Cryostat.

A pair of superconducting interaction region quadrupole magnets for BEPCII was designed and fabricated at Brookhaven National Laboratory, USA. The cryogenic system for the IR magnets was designed at Harbin Institute of Technology, China. This paper provides the results of thermal fluid modeling for the magnet cryostat. The numerical analyses were carried out for two types of cooling methods, the subcooled liquid helium and the supercritical helium flow. The pressure and temperature changes in the cooling circuits are given.
Date: May 11, 2004
Creator: Wang, L.; Tang, H. M.; Zhang, X. B.; Yang, G. D. & Jia, L. X.
Object Type: Article
System: The UNT Digital Library
Groundwater Data Package for the 2004 Composite Analysis (open access)

Groundwater Data Package for the 2004 Composite Analysis

This report presents data and information that supports the groundwater module. The conceptual model of groundwater flow and transport at the Hanford Site is described and specific information applied in the numerical implementation module is provided.
Date: August 11, 2004
Creator: Thorne, Paul D.
Object Type: Report
System: The UNT Digital Library
A Study of the Ion Hose Instability in the DARHT-II Downstream Transport Region (open access)

A Study of the Ion Hose Instability in the DARHT-II Downstream Transport Region

The second axis of the DARHT flash X-ray facility at Los Alamos National Laboratory (''DARHT-II'') is a multiple-pulse, 18.4 MeV, 2 kA induction electron linear accelerator [1]. A train of short ({approx}50 ns) pulses are converted via bremsstrahlung to X-rays, which are then used to make radiographic images at various times (nominally four) during a ''hydrotest'' experiment. The train of pulses is created by carving them out of a two microsecond long macropulse, using a fast switching element called a kicker [2]. The unused portion of the macropulse is absorbed in a beam dump. Thus, upstream of the kicker, two microseconds of beam are transported through a vacuum system roughly sixty meters long. These conditions involve length and, specifically, time scales which are new to the transport of high-current beams. A concern under such conditions are the macroscopic interactions between the electron beam and positive ions created by impact ionization of the residual gas in the vacuum system. Over two microseconds, the ion density can develop to a hundredth or even a tenth of a percent of the beam density--small, to be sure, but large enough to have cumulative effects over such a long transport distance. Two such effects will …
Date: November 11, 2004
Creator: McCarrick, J F
Object Type: Report
System: The UNT Digital Library
NotCal04 - Comparison / Calibration 14C records 26-50 cal kBP (open access)

NotCal04 - Comparison / Calibration 14C records 26-50 cal kBP

The radiocarbon calibration curve, IntCal04, extends back to 26 cal kBP. While several high resolution records exist beyond this limit, these data sets exhibit discrepancies one to another of up to several millennia. As a result, no calibration curve for the time range 26-50 cal kBP can be recommended as yet, but in this paper the IntCal04 working group compares the available data sets and offers a discussion of the information that they hold.
Date: November 11, 2004
Creator: der Plicht, J. V.; Beck, J.; Bard, E. & Baille, M.
Object Type: Article
System: The UNT Digital Library
Optical Probes For Continuous Fabry-Perot Velocimetry Inside Materials (open access)

Optical Probes For Continuous Fabry-Perot Velocimetry Inside Materials

We have used velocimetry for many years at LLNL to measure velocity-time histories of surfaces in dynamic experiments. We have developed and now use special instrumentation to make continuous shock-velocity measurements inside of materials. The goal is to extend the field of velocimetry into a new area of application in shock physics. At the last Congress we reported the successful use of our new filter system for selectively eliminating most of the non- Doppler-shifted light. We showed one record of a fiber embedded inside an explosive making a continuous detonation velocity-time history. At that time it was difficult to obtain complete records. We have now carried out over 65 inexpensive experiments usually using small cylinders or rectangular blocks of explosives or metals. Most were started by detonating a 25 mm diam by 25 mm long cylinder of Comp B explosive to drive a shock into an adjacent material of similar dimensions, using our embedded fiber probes. In contrast to surface velocimetry, embedded measurements involve detailed hydrodynamic considerations in order to result in a successful record. Calculations have guided us in understanding of various failed and successful experiments. The homogeneity of the explosive, poor contact, the materials used in the cladding …
Date: August 11, 2004
Creator: Goosman, D.; Wade, J.; Garza, R.; Avara, G.; Crabtree, T.; Rivera, A. et al.
Object Type: Article
System: The UNT Digital Library
Single-State Electronic Structure Measurements Using Time-Resolved X-Ray Laser Induced Photoelectron Spectroscopy (open access)

Single-State Electronic Structure Measurements Using Time-Resolved X-Ray Laser Induced Photoelectron Spectroscopy

We demonstrate single-shot x-ray laser induced time-of-flight photoelectron spectroscopy on semiconductor and metal surfaces with picosecond time resolution. The LLNL COMET compact tabletop x-ray laser source provides the necessary high photon flux (>10{sup 12}/pulse), monochromaticity, picosecond pulse duration, and coherence for probing ultrafast changes in the city, chemical and electronic structure of these materials. Static valence band and shallow core-level photoemission spectra are presented for ambient temperature Ge(100) and polycrystalline Cu foils. Surface contamination was removed by UV ozone cleaning prior to analysis. In addition, the ultrafast nature of this technique lends itself to true single-state measurements of shocked and heated materials. Time-resolved electron time-of-flight photoemission results for ultra-thin Cu will be presented.
Date: November 11, 2004
Creator: Nelson, A J; Dunn, J; van Buuren, T & Hunter, J
Object Type: Article
System: The UNT Digital Library
Rapid Generation of a Nanocrystal-Labeled Peptide Library for Specific Identification of the Bacterium Clostrium Botulinum (open access)

Rapid Generation of a Nanocrystal-Labeled Peptide Library for Specific Identification of the Bacterium Clostrium Botulinum

Several peptide libraries containing up to 2 million unique peptide ligands have been synthesized. The peptides are attached onto a 80 micron resin and the length of these peptide ligands ranges from 5 to 9 amino acid residues. Using a novel calorimetric assay, the libraries were screened for binding to the ganglioside-binding domain of Clostridium Tetanus Toxin, a structural similar analog of the Clostridium Botulinum toxin. Several binding peptide sequences were identified, in which the detailed binding kinetics are currently underway using the Surface Plasmon Resonance (SPR) technique.
Date: November 11, 2004
Creator: Tok, J B
Object Type: Report
System: The UNT Digital Library
Methods for Calibrating Basin-Wide Hydroacoustic Propagation in the Indian Ocean (open access)

Methods for Calibrating Basin-Wide Hydroacoustic Propagation in the Indian Ocean

This collaborative project was designed to test and compare methods for achieving full ocean basin propagation of hydroacoustic signals in the 5-100 Hz frequency band. Plans for a systematic calibration of the International Monitoring System (IMS) for nuclear testing were under consideration in 2000/2001. The results from this project provide information to guide such planning for future ocean basin calibration work. Several acoustic source types were tested during two sea-going experiments and most were successful at generating signals that propagated hundreds to thousands of km to be recorded at the Indian Ocean IMS hydrophone stations. Development and numerical modeling of imploding glass sphere sources was one component of this testing. The intent was to design a relatively simple-to-use source that is not subject to restrictions that can limit use of explosive charges, but whose signal is large enough to propagate 100-1000's km range. Analysis of IMS hydrophone data recording during the experiments was used to illustrate the extent of energy loss during signal propagation and to assess the accuracy with which the small acoustic sources could be located using methods typically employed for nuclear monitoring.
Date: October 11, 2004
Creator: Blackman, D; de Groot-Hedlin, C; Orcutt, J A; Harben, P H; Clarke, D B & Ramirez, A L
Object Type: Report
System: The UNT Digital Library
User Documentation for CVODE v2.2.0 (open access)

User Documentation for CVODE v2.2.0

None
Date: November 11, 2004
Creator: Hindmarsh, A C & Serban, R
Object Type: Text
System: The UNT Digital Library
High pT hadron spectra at RHIC: an overview (open access)

High pT hadron spectra at RHIC: an overview

Recent results on high transverse momentum (p{sub T}) hadron production in p+p, d+Au and Au+Au collisions at the Relativistic Heavy Ion Collider (RHIC) are reviewed. Comparison of the nuclear modification factors, R{sub dAu}(p{sub T}) and R{sub AA}(p{sub T}), demonstrates that the large suppression in central Au+Au collisions is due to strong final-state effects. Theoretical models which incorporate jet quenching via gluon Bremsstrahlung in the dense partonic medium that is expected in central Au+Au collisions at ultra-relativistic energies are shown to reproduce the shape and magnitude of the observed suppression over the range of collision energies so far studied at RHIC.
Date: October 11, 2004
Creator: Klay, J L
Object Type: Article
System: The UNT Digital Library
User Documentation for IDA v2.2.0 (open access)

User Documentation for IDA v2.2.0

None
Date: November 11, 2004
Creator: Hindmarsh, A C & Serban, R
Object Type: Text
System: The UNT Digital Library

Comparison of up-scaling methods in poroelasticity and its generalizations

None
Date: June 11, 2004
Creator: Berryman, James G.
Object Type: Presentation
System: The UNT Digital Library
Comparison of Electron Cloud Simulation and Experiments in the High-Current Experiment (open access)

Comparison of Electron Cloud Simulation and Experiments in the High-Current Experiment

Contaminating clouds of electrons are a common concern for accelerators of positive-charged particles, but there are some unique aspects of heavy-ion accelerators for fusion and high-energy density physics which make modeling such clouds especially challenging. In particular, self-consistent electron and ion simulation is required, including a particle advance scheme which can follow electrons in regions where electrons are strongly, weakly, and un-magnetized. We describe our approach to such self-consistency, and in particular a scheme for interpolating between full-orbit (Boris) and drift-kinetic particle pushes that enables electron time steps long compared to the typical gyro period in the magnets. We present tests and applications: simulation of electron clouds produced by three different kinds of sources indicates the sensitivity of the cloud shape to the nature of the source; first-of-a-kind self-consistent simulation of electron-cloud experiments on the High-Current Experiment (HCX) at LBNL, in which the machine can be flooded with electrons released by impact of the ion beam on an end plate, demonstrate the ability to reproduce key features of the ion-beam phase space; and simulation of a two-stream instability of thin beams in a magnetic field demonstrate the ability of the large-timestep mover to accurately calculate the instability.
Date: November 11, 2004
Creator: Cohen, R H; Friedman, A; Covo, M K; Lund, S M; Molvik, A W; Bieniosek, F M et al.
Object Type: Article
System: The UNT Digital Library
Parallel Algebraic Multigrids for Structural mechanics (open access)

Parallel Algebraic Multigrids for Structural mechanics

This paper presents the results of a comparison of three parallel algebraic multigrid (AMG) preconditioners for structural mechanics applications. In particular, they are interested in investigating both the scalability and robustness of the preconditioners. Numerical results are given for a range of structural mechanics problems with various degrees of difficulty.
Date: May 11, 2004
Creator: Brezina, M; Tong, C & Becker, R
Object Type: Article
System: The UNT Digital Library
Analysis of design tradeoffs for diplay case evaporators (open access)

Analysis of design tradeoffs for diplay case evaporators

A model for simulating a display case evaporator under frosting conditions has been developed, using a quasi-steady and finite-volume approach and a Newton-Raphson based solution algorithm. It is capable of simulating evaporators with multiple modules having different geometries, e.g. tube and fin thicknesses and pitch. The model was validated against data taken at two-minute intervals from a well-instrumented medium-temperature vertical display case, for two evaporators having very different configurations. The data from these experiments provided both the input data for the model and also the data to compare the modeling results. The validated model has been used to generate some general guidelines for coil design. Effects of various geometrical parameters were quantified, and compressor performance data were used to express the results in terms of total power consumption. Using these general guidelines, a new prototype evaporator was designed for the subject display case, keeping in mind the current packaging restrictions, tube and fin availabilities. It is an optimum coil for the given external load conditions. Subsequently, the validated model was used in a more extensive analysis to design prototype coils with some of the current tube and fin spacing restrictions removed. A new microchannel based suction line heat exchanger was …
Date: August 11, 2004
Creator: Bullard, CLARK
Object Type: Report
System: The UNT Digital Library
PM Motor Parametric Design Analyses for a Hybrid Electric Vehicle Traction Drive Application (open access)

PM Motor Parametric Design Analyses for a Hybrid Electric Vehicle Traction Drive Application

The Department of Energy's (DOE) Office of FreedomCAR (Cooperative Automotive Research) and Vehicle Technologies office has a strong interest in making rapid progress in permanent magnet (PM) machine development. The DOE FreedomCAR program is directing various technology development projects that will advance the technology and hopefully lead to a near-term request for proposals (RFP) for a to-be-determined level of initial production. This aggressive approach is possible because the technology is clearly within reach and the approach is deemed essential, based on strong market demand, escalating fuel prices, and competitive considerations. In response, this study began parallel development paths that included a literature search/review, development and utilization of multiple parametric models, verification of the modeling methodology, development of an interior PM (IPM) machine baseline design, development of alternative machine baseline designs, and cost analyses for several candidate machines. This report summarizes the results of these activities as of September 2004. This report provides background and summary information for recent machine parametric studies and testing programs that demonstrate both the potential capabilities and technical limitations of brushless PM machines (axial gap and radial gap), the IPM machine, the surface-mount PM machines (interior or exterior rotor), induction machines, and switched-reluctance machines. The FreedomCAR …
Date: October 11, 2004
Creator: Staunton, R.H.
Object Type: Report
System: The UNT Digital Library
Supplement Analysis for the Watershed Management Program EIS--Tapteal Bend Riparian Corridor Restoration Project (open access)

Supplement Analysis for the Watershed Management Program EIS--Tapteal Bend Riparian Corridor Restoration Project

The Bonneville Power Administration is proposing to fund the restoration of approximately 500 feet of streambank along the Yakima River at river mile 8, upstream of the Van Giesen Bridge on SR 224, in and between Richland and West Richland, Washington. This project will also result in the acquisition of Fox Island, a 12-acre island directly across the river from the restoration area. There is no development planned for the island. The proposed project includes: The installation of a bio-engineered streambank that incorporates barbs to capture silt and deflect flow, roughened rock or log toes, a riparian buffer, soil reinforcement, and bank grading. Long-term photo-point and plot sampling will also be implemented to evaluate the effectiveness and success of the restoration project. The NEPA compliance checklist for this project was completed by Darrel Sunday, a contractor with Sunday and Associates, Inc. (April 4, 2004), and meets the standards and guidelines for the Watershed Management Program Environmental Impact Statement (EIS) and Record of Decision (ROD). The Endangered Species Act (ESA) listed species that may occur in the general vicinity of the project area are the pygmy rabbit, bald eagle, bull trout, Ute ladies'-tresses, and mid-Columbia Steelhead. The pygmy rabbit, bald eagle, …
Date: August 11, 2004
Creator: unknown
Object Type: Report
System: The UNT Digital Library