Models are developed and solved to describe the flow of and deposition from low and high concentration turbidity currents. The shallow water equations are amended to include particle transport to describe the low concentration turbidity currents. The suspension balance model is used to describe the high concentration turbidity currents. Numerical simulations are developed to solve the highly non-linear, free boundary problems associated with these models. Simpler, algebraic scaling relationships are also developed for these models. The models are successfully validated against field observations of turbidites. With these models, one can take seismic information on the shape of the turbiditic deposit and estimate the particle size, which can be used to determine the porosity and permeability.

This plan provides a description of the groundwater and surface water quality monitoring activities planned for calendar year (CY) 2006 at the U.S. Department of Energy (DOE) Y-12 National Security Complex (Y-12) that will be managed by the Y-12 Groundwater Protection Program (GWPP). Groundwater and surface water monitoring performed by the GWPP during CY 2006 will be in accordance with DOE Order 540.1 requirements and the following goals: {sm_bullet} to maintain surveillance of existing and potential groundwater contamination sources; {sm_bullet} to provide for the early detection of groundwater contamination and determine the quality of groundwater and surface water where contaminants are most likely to migrate beyond the Oak Ridge Reservation property line; {sm_bullet} to identify and characterize long-term trends in groundwater quality at Y-12; and ! to provide data to support decisions concerning the management and protection of groundwater resources. Groundwater and surface water monitoring during CY 2006 will be performed primarily in three hydrogeologic regimes at Y-12: the Bear Creek Hydrogeologic Regime (Bear Creek Regime), the Upper East Fork Poplar Creek Hydrogeologic Regime (East Fork Regime), and the Chestnut Ridge Hydrogeologic Regime (Chestnut Ridge Regime). The Bear Creek and East Fork regimes are located in Bear Creek Valley, and …

Objective: To determine if exercise reduces body weight andto examine the dose-response relationships between changes in exerciseand changes in total and regional adiposity. Methods and Results:Questionnaires on weekly running distance and adiposity from a largeprospective study of 3,973 men and 1,444 women who quit running(detraining), 270 men and 146 women who started running (training) and420 men and 153 women who remained sedentary during 7.4 years offollow-up. There were significant inverse relationships between change inthe amount of vigorous exercise (km/wk run) and changes in weight and BMIin men (slope+-SE:-0.039+-0.005 kg and -0.012+-0.002 kg/m2 per km/wk,respectively) and older women (-0.060+-0.018 kg and -0.022+-0.007 kg/m2per km/wk) who quit running, and in initially sedentary men(-0.098+-0.017 kg and -0.032+-0.005 kg/m2 per km/wk) and women(-0.062+-0.023 kg and -0.021+-0.008 kg/m2 per km/wk) who started running.Changes in waist circumference were also inversely related to changes inrunning distance in men who quit (-0.026+-0.005 cm per km/wk) or startedrunning (-0.078+-0.017 cm per km/wk). Conclusions. The initiation andcessation of vigorous exercise decrease and increase body weight andintra-abdominal fat, respectively, and these changes are proportional tothe change in exercise dose.

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The National Spherical Torus Experiment [Ono et al., Nucl. Fusion, 44, 452 (2004)] is targeting long pulse high performance, noninductive sustained operations at low aspect ratio, and the demonstration of nonsolenoidal startup and current rampup. The modeling of these plasmas provides a framework for experimental planning and identifies the tools to access these regimes. Simulations based on neutral beam injection (NBI)-heated plasmas are made to understand the impact of various modifications and identify the requirements for (1) high elongation and triangularity, (2) density control to optimize the current drive, (3) plasma rotation and/or feedback stabilization to operate above the no-wall limit, and (4) electron Bernstein waves (EBW) for off-axis heating/current drive (H/CD). Integrated scenarios are constructed to provide the transport evolution and H/CD source modeling, supported by rf and stability analyses. Important factors include the energy confinement, Zeff, early heating/H mode, broadening of the NBI-driven current profile, and maintaining q(0) and qmin>1.0. Simulations show that noninductive sustained plasmas can be reached at IP=800 kA, BT=0.5 T, 2.5, N5, 15%, fNI=92%, and q(0)>1.0 with NBI H/CD, density control, and similar global energy confinement to experiments. The noninductive sustained high plasmas can be reached at IP=1.0 MA, BT=0.35 T, 2.5, N9, 43%, …

The chloroplast genome of Pelargonium e hortorum has beencompletely sequenced. It maps as a circular molecule of 217,942 bp, andis both the largest and most rearranged land plant chloroplast genome yetsequenced. It features two copies of a greatly expanded inverted repeat(IR) of 75,741 bp each, and consequently diminished single copy regionsof 59,710 bp and 6,750 bp. It also contains two different associations ofrepeated elements that contribute about 10 percent to the overall sizeand account for the majority of repeats found in the genome. Theyrepresent hotspots for rearrangements and gene duplications and include alarge number of pseudogenes. We propose simple models that account forthe major rearrangements with a minimum of eight IR boundary changes and12 inversions in addition to a several insertions of duplicated sequence.The major processes at work (duplication, IR expansion, and inversion)have disrupted at least one and possibly two or three transcriptionaloperons, and the genes involved in these disruptions form the core of thetwo major repeat associations. Despite the vast increase in size andcomplexity of the genome, the gene content is similar to that of otherangiosperms, with the exceptions of a large number of pseudogenes as partof the repeat associations, the recognition of two open reading frames(ORF56 and ORF42) …

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The Ortec trans-SPEC is a portable gamma ray spectrometer which is approximately 10.4 kg in total weight and 37 cm × 16 cm × 32 cm in overall size It utilizes a P-type 50 mm diameter and 30 mm height coaxial HPGe detector and has more than 3 hours of battery life when fully charged. This paper details the experimental agreement found for one of these detector units and that of MCNP5 [1] calculations. The purpose of carrying out this work is to evaluate the potential utility of the spectrometer for emergency response (consequence management) applications.

The Surface and Tower Meteorological Instrumentation at Atqasuk (METTWR2H) uses mainly conventional in situ sensors to measure wind speed, wind direction, air temperature, dew point and humidity mounted on a 10-m tower. It also obtains barometric pressure, visibility, and precipitation data from sensors at or near the base of the tower. In addition, a Chilled Mirror Hygrometer is located at 1 m for comparison purposes. Temperature and relative humidity probes are mounted at 2 m and 5 m on the tower. For more information, see the Surface and Tower Meteorological Instrumentation at Atqasuk Handbook.

The Institute of Medicine (IOM) of the National Academy of Sciences recently completed a critical review of the scientific literature pertaining to the association of indoor dampness and mold contamination with adverse health effects. In this paper, we report the results of quantitative meta-analysis of the studies reviewed in the IOM report. We developed point estimates and confidence intervals (CIs) to summarize the association of several respiratory and asthma-related health outcomes with the presence of dampness and mold in homes. The odds ratios and confidence intervals from the original studies were transformed to the log scale and random effect models were applied to the log odds ratios and their variance. Models were constructed both accounting for the correlation between multiple results within the studies analyzed and ignoring such potential correlation. Central estimates of ORs for the health outcomes ranged from 1.32 to 2.10, with most central estimates between 1.3 and 1.8. Confidence intervals (95%) excluded unity except in two of 28 instances, and in most cases the lower bound of the CI exceeded 1.2. In general, the two meta-analysis methods produced similar estimates for ORs and CIs. Based on the results of the meta-analyses, building dampness and mold are associated …

For many years, the U.S. Department of Energy (DOE) has supported and sponsored various types of water research relating to the oil and gas industry through its Office of Fossil Energy and its National Energy Technology Laboratory (NETL). In early 2005, the Petroleum Environmental Research Forum (PERF) submitted a proposal to DOE for funding an upcoming PERF meeting that would feature water research in the petroleum industry. PERF is a nonprofit organization created in 1986 to provide a stimulus to and a forum for the collection, exchange, and analysis of research information related to the development of technology concerning the petroleum industry, and a mechanism for establishing joint research projects in that field. Additional information on PERF can be accessed at http://www.perf.org. DOE agreed to provide funding to hold a review of its water research program in conjunction with the fall 2005 PERF meeting. Argonne National Laboratory (Argonne) was asked to coordinate and host the meeting, which was referred to as the DOE/PERF Water Program Review. The program review was held on November 1-4, 2005, in Annapolis, Maryland, at the Historic Inns of Annapolis. The purpose of the program review was to provide a forum for sharing information, reviewing current …

This paper describes and demonstrates the use of the coupledTOUGH-FLAC simulator for geomechanical shear-slip (failure) analysis inmultiphase fluid-flow reservoir-engineering applications. Two approachesfor analyzing shear-slip are described, one using continuum stress-strainanalysis and another using discrete fault analysis. The use of shear-slipanalysis in TOUGH-FLAC is demonstrated on application examples related toCO2 sequestration and geothermal energy extraction. In the case of CO2sequestration, the shear-slip analysis is used to evaluate maximumsustainable CO2-injection pressure under increasing reservoir pressure,whereas in the case of geothermal energy extraction, the shear-slipanalysis is used to study induced seismicity during steam productionunder decreasing reservoir pressure and temperature.

This paper presents a numerical study of coupled hydrological and geomechanical processes during a deep underground injection of supercritical CO{sub 2} in a hypothetical brine aquifer. We consider a multilayer system in which the injection zone is situated below a sequence of caprock and aquifer layers that are intersected by a vertical fault zone. The fault zone consists of highly fractured shale across the first caprock layers that are located just above the injection zone. Initially, the fractured shale zones are considered sealed with minerals, but we allow fractures (and the fractured zones) to open as a result of injection induced reductions in effective stresses. Our results indicate that even when assuming a very sensitive relationship between effective stress and fractured-zone permeability, the injection-induced changes in permeability across are only moderate with largest changes occurring in the first caprock layer, just above the injection zone. As a result, the upward leakage rate remains relatively small and therefore changes in fluid pressure and hydromechanical effects in overlying zones are also relatively small for the case studied in this paper.

A new iterative method is developed to numerically calculate the periodic, matched beam envelope solution of the coupled Kapchinskij-Vladimirskij (KV) equations describing the transverse evolution of a beam in a periodic, linear focusing lattice of arbitrary complexity. Implementation of the method is straightforward. It is highly convergent and can be applied to all usual parameterizations of the matched envelope solutions. The method is applicable to all classes of linear focusing lattices without skew couplings, and also applies to parameters where the matched beam envelope is strongly unstable. Example applications are presented for periodic solenoidal and quadrupole focusing lattices. Convergence properties are summarized over a wide range of system parameters.

Previous research has identified links between changes in sea surface temperature (SST) and hurricane intensity. We use climate models to study the possible causes of SST changes in Atlantic and Pacific tropical cyclogenesis regions. The observed SST increases in these regions range from 0.32 to 0.67 C over the 20th century. The 22 climate models examined here suggest that century-timescale SST changes of this magnitude cannot be explained solely by unforced variability of the climate system, even under conservative assumptions regarding the magnitude of this variability. Model simulations that include external forcing by combined anthropogenic and natural factors are generally capable of replicating observed SST changes in both tropical cyclogenesis regions.

Chloroplast genome structure, gene order and content arehighly conserved in land plants. We sequenced the complete chloroplastgenome sequence of Trachelium caeruleum (Campanulaceae) a member of anangiosperm family known for highly rearranged chloroplast genomes. Thetotal genome size is 162,321 bp with an IR of 27,273 bp, LSC of 100,113bp and SSC of 7,661 bp. The genome encodes 115 unique genes, with 19duplicated in the IR, a tRNA (trnI-CAU) duplicated once in the LSC and aprotein coding gene (psbJ) duplicated twice, for a total of 137 genes.Four genes (ycf15, rpl23, infA and accD) are truncated and likelynonfunctional; three others (clpP, ycf1 and ycf2) are so highly divergedthat they may now be pseudogenes. The most conspicuous feature of theTrachelium genome is the presence of eighteen internally unrearrangedblocks of genes that have been inverted or relocated within the genome,relative to the typical gene order of most angiosperm chloroplastgenomes. Recombination between repeats or tRNAs has been suggested as twomeans of chloroplast genome rearrangements. We compared the relativenumber of repeats in Trachelium to eight other angiosperm chloroplastgenomes, and evaluated the location of repeats and tRNAs in relation torearrangements. Trachelium has the highest number and largest repeats,which are concentrated near inversion endpoints or other rearrangements.tRNAs occur at …

Background: Body weight increases with aging. Short-term,longitudinal exercise training studies suggest that increasing exerciseproduces acute weight loss, but it is not clear if the maintenance oflong-term, vigorous exercise attenuates age-related weight gain inproportion to the exercise dose. Methods: Prospective study of 6,119 maleand 2,221 female runners whose running distance changed less than 5 km/wkbetween their baseline and follow-up survey 7 years later. Results: Onaverage, men who ran modest (0-24 km/wk), intermediate (24-48 km/wk) orprolonged distances (>_48 km/wk) all gained weight throughage 64,however, those who ran ?48 km/wk had one-half the average annual weightgain of those who ran<24 km/wk. Age-related weight gain, and itsreduction by running, were both greater in younger than older men. Incontrast, men s gain in waist circumference with age, and its reductionby running, were the same in older and younger men. Women increased theirbody weight and waist and hip circumferences over time, regardless ofage, which was also reduced in proportion to running distance. In bothsexes, running did not attenuate weight gain uniformly, but ratherdisproportionately prevented more extreme increases. Conclusion: Men andwomen who remain vigorously active gain less weight as they age and thereduction is in proportion to the exercise dose.

This report is intended to document the efforts I made tomodel the North Pacific in order to understand the path of the CarbonExplorers, deployed April 10, 2001. Interestingly, these floats movedwestward and northward in the first two months after deployment at OceanStation PAPA (hereafter, OSP), rather than eastward as expected. Myintent was to force the model with the observed winds and temperatures inorder to replicate the path of the floats during this time period. I thenwanted to compare these paths with the conditions in 2003, when thefloats took a more accelerated path and saw different biomass signatures.Unfortunately, I was never able to replicate the path of the 2001 floats:the model floats always went eastward. So, this report is a documentationof what I tried, some thoughts about why I was not successful, and afinal section explaining where the files are located at NERSC, in casesomeone else wants to expand on the current work.

Background: The predicted health benefits of becomingphysically active or fit will be exaggerated if health outcomes causefitness and activity rather than the converse in prospective andcross-sectional epidemiological studies. Objective: Assess whether therelationships of adiposity to fitness and activity are explained byadiposity prior to exercising. Design: Cross-sectional study of physicalfitness (running speed during 10km foot race) and physical activity(weekly running distance) to current BMI (BMIcurrent) and BMI at thestart of running (BMIstarting) in 44,370 male and 25,252 femaleparticipants of the National Runners' Health Study. Results: BMIstartingexplained all of the association between fitness and BMIcurrent in bothsexes, but less than a third of the association between physical activityand BMIcurrent in men. In women, BMIstarting accounted for 58 percent ofthe association between BMIcurrent and activity levels. The 95thpercentile of BMIcurrent showed substantially greater declines withfitness and activity levels than the 5th percentile of BMIcurrent in men(i.e., the negative slope for 95th percentile was 2.6-fold greater thanthe 5th percentile for fitness and 3-fold greater for activity) and women(6-fold and 3.4-fold greater, respectively). At all percentiles, theregression slopes relating BMIstarting to fitness were comparable orgreater (more negative) than the slopes relating BMIcurrent to fitness,whereas the converse was true for activity. Conclusion: Self-selectionbias accounts for all …

On September 8-9, 2005, representatives of the Kansas Department of Health and Environment (KDHE), the Commodity Credit Corporation of the U.S. Department of Agriculture (CCC/USDA), and Argonne National Laboratory met at the KDHE's offices in Topeka to review the status of the CCC/USDA's environmental activities in Kansas. A key CCC/USDA goal for this meeting was to obtain KDHE input on the selection of possible remedial approaches to be examined as part of the Corrective Action Study (CAS) for this site. As a result of the September meeting, the KDHE recommended several additional activities for the Everest site, to further assist in selecting and evaluating remedial alternatives for the CAS. The requested actions included the following: (1) Construction of several additional interpretive cross sections to improve the depiction of the hydrogeologic characteristics affecting groundwater and contaminant movement along the apparent main plume migration pathway to the north-northwest of the former CCC/USDA facility, and in the vicinity of the Nigh property. (2) Identification of potential locations for several additional monitoring wells, to better constrain the apparent western and northwestern margins of the existing groundwater plume. (3) Development of technical recommendations for a stepwise pumping study of the Everest aquifer unit in the …

Single stranded DNA of different lengths and different amounts was attached to colloidal phosphine stabilized Au nanoparticles. The resulting conjugates were investigated in detail by a gel electrophoresis study based on 1200 gels. We demonstrate how these experiments help to understand the binding of DNA to Au particles. In particular we compare specific attachment of DNA via gold-thiol bonds with nonspecific adsorption of DNA. The maximum number of DNA molecules that can be bound per particle was determined. We also compare several methods to used gel electrophoresis for investigating the effective diameter of DNA-Au conjugates, such as using a calibration curve of particles with known diameters and Ferguson plots.

The University of California, Davis hosted the High Energy Density and High Power RF 7th Workshop on High Energy Density and High Power RF in Kalamata, Greece, 13-17 June, 2005. The Proceedings cost was supported by these funds from the U.S. Department of Energy. The Proceedings was published through the American Institute of Physics.

Lawrence Livermore National Laboratory (LLNL) has developed several different strategies and technologies for the on-site detection of explosives. These on-site detection techniques include a colorimetric test, thin layer chromatography (TLC) kit and portable gas chromatography mass spectrometer (GC/MS). The screening of suspicious containers on-site and the search for trace explosive residue in a post-blast forensic investigation are of great importance. For these reasons, LLNL's Forensic Science Center has developed a variety of fieldable detection technologies to screen for a wide range of explosives in various matrices and scenarios. Ideally, what is needed is a fast, accurate, easy-to-use, pocket-size and inexpensive field screening test for explosives.

Interactions between chemical functionalities define outcomes of the vast majority of important events in chemistry, biology and materials science. Chemical Force Microscopy (CFM)--a technique that uses direct chemical functionalization of AFM probes with specific functionalities--allows researchers to investigate these important interactions directly. We review the basic principles of CFM, some examples of its application, and theoretical models that provide the basis for understanding the experimental results. We also emphasize application of modern kinetic theory of non-covalent interactions strength to the analysis of CFM data.