Spectrally narrowed leaky waveguide edge emission and transient electrluminescent dynamics of OLEDs (open access)

Spectrally narrowed leaky waveguide edge emission and transient electrluminescent dynamics of OLEDs

In summary, there are two major research works presented in this dissertation. The first research project (Chapter 4) is spectrally narrowed edge emission from Organic Light Emitting Diodes. The second project (Chapter 5) is about transient electroluminescent dynamics in OLEDs. Chapter 1 is a general introduction of OLEDs. Chapter 2 is a general introduction of organic semiconductor lasers. Chapter 3 is a description of the thermal evaporation method for OLED fabrication. The detail of the first project was presented in Chapter 4. Extremely narrowed spectrum was observed from the edge of OLED devices. A threshold thickness exists, above which the spectrum is narrow, and below which the spectrum is broad. The FWHM of spectrum depends on the material of the organic thin films, the thickness of the organic layers, and length of the OLED device. A superlinear relationship between the output intensity of the edge emission and the length of the device was observed, which is probably due to the misalignment of the device edge and the optical fiber detector. The original motivation of this research is for organic semiconductor laser that hasn't been realized due to the extremely high photon absorption in OLED devices. Although we didn't succeed in …
Date: January 1, 2010
Creator: Zhengqing, Gan
Object Type: Thesis or Dissertation
System: The UNT Digital Library
Use of glide-ins in CMS for production and analysis (open access)

Use of glide-ins in CMS for production and analysis

With the evolution of various grid federations, the Condor glide-ins represent a key feature in providing a homogeneous pool of resources using late-binding technology. The CMS collaboration uses the glide-in based Workload Management System, glideinWMS, for production (ProdAgent) and distributed analysis (CRAB) of the data. The Condor glide-in daemons traverse to the worker nodes, submitted via Condor-G. Once activated, they preserve the Master-Worker relationships, with the worker first validating the execution environment on the worker node before pulling the jobs sequentially until the expiry of their lifetimes. The combination of late-binding and validation significantly reduces the overall failure rate visible to CMS physicists. We discuss the extensive use of the glideinWMS since the computing challenge, CCRC-08, in order to prepare for the forthcoming LHC data-taking period. The key features essential to the success of large-scale production and analysis on CMS resources across major grid federations, including EGEE, OSG and NorduGrid are outlined. Use of glide-ins via the CRAB server mechanism and ProdAgent, as well as first hand experience of using the next generation CREAM computing element within the CMS framework is discussed.
Date: January 1, 2010
Creator: Bradley, D.; /Wisconsin U., Madison; Gutsche, O.; /Fermilab; Hahn, K.; /MIT et al.
Object Type: Article
System: The UNT Digital Library
Search for the production of the standard model z boson in association with W<sup>±</sup> boson in proton anti-p collisions at 1.96 TeV center of mass energy (open access)

Search for the production of the standard model z boson in association with W<sup>±</sup> boson in proton anti-p collisions at 1.96 TeV center of mass energy

The search for the production of the Standard Model Z boson in association with a W boson is motivated and discussed. This is performed using 4.3 fb<sup>-1</sup> of Tevatron Run II data collected with the CDF detector in √s = 1.96 TeV proton anti-proton collisions. This is a signature-based analysis where the W boson decays semileptonically into a high-P<sub>T</sub> electron or muon plus a neutrino, and where the Z boson decays into two b quark jets (b-jets). We increase the signal-to-background ratio by identifying the b-quarks in the jets with a new neural network-based algorithm. Another neural network then uses kinematic information to distinguish WZ to further increase the signal-to-background ratio. Since our sensitivity is still not enough to achieve an observation, we set a 95% Confidence Level upper limit on the product of the WZ production cross section and its branching fraction to the decay products specified above, and express it as a ratio to the theoretical Standard Model prediction. The resulting limit is 3.9 x SM (3.9 x SM expected).
Date: January 1, 2010
Creator: Keung, Justin Kien
Object Type: Thesis or Dissertation
System: The UNT Digital Library
A genetic algorithm approach in interface and surface structure optimization (open access)

A genetic algorithm approach in interface and surface structure optimization

The thesis is divided into two parts. In the first part a global optimization method is developed for the interface and surface structures optimization. Two prototype systems are chosen to be studied. One is Si[001] symmetric tilted grain boundaries and the other is Ag/Au induced Si(111) surface. It is found that Genetic Algorithm is very efficient in finding lowest energy structures in both cases. Not only existing structures in the experiments can be reproduced, but also many new structures can be predicted using Genetic Algorithm. Thus it is shown that Genetic Algorithm is a extremely powerful tool for the material structures predictions. The second part of the thesis is devoted to the explanation of an experimental observation of thermal radiation from three-dimensional tungsten photonic crystal structures. The experimental results seems astounding and confusing, yet the theoretical models in the paper revealed the physics insight behind the phenomena and can well reproduced the experimental results.
Date: January 1, 2010
Creator: Zhang, Jian
Object Type: Thesis or Dissertation
System: The UNT Digital Library
A Soft X-ray Spectrometer using a Highly Dispersive Multilayer Grating (open access)

A Soft X-ray Spectrometer using a Highly Dispersive Multilayer Grating

There is a need for higher resolution spectrometers as a tool for inelastic x-ray scattering. Currently, resolving power around R = 10,000 is advertised. Measured RIXS spectra are often limited by this instrumental resolution and higher resolution spectrometers using conventional gratings would be prohibitively large. We are engaged in a development program to build blazed multilayer grating structures for diffracting soft x-rays in high order. This leads to spectrometers with dispersion much higher than is possible using metal coated-gratings. The higher dispersion then provides higher resolution and the multilayer gratings are capable of operating away from grazing incidence as required. A spectrometer design is presented with a total length 3.8m and capable of 10{sup 5} resolving power.
Date: January 31, 2010
Creator: Warwick, Tony; Padmore, Howard; Voronov, Dmitriy & Yashchuk, Valeriy
Object Type: Article
System: The UNT Digital Library
Search for MSSM Higgs Bosons in Tau Final States with the D0 Detector (open access)

Search for MSSM Higgs Bosons in Tau Final States with the D0 Detector

The cross-section times branching ratio of the Higgs boson decaying to τ<sup>+</sup>τ<sup>-</sup> final state in the Standard Model (SM) is too small to play any role in the SM Higgs boson searches. This, however, is different in the Minimal Supersymmetric Standard Model (MSSM), which predicts two Higgs doublets leading to five Higgs bosons: a pair of charged Higgs boson (H<sup>±</sup>); two neutral CP-even Higgs bosons (h,H) and a CP-odd Higgs boson (A). A search for the production of neutral Higgs bosons decaying into τ<sup>+</sup>τ<sup>-</sup> final states in p{bar p} collisions at a centre-of-mass energy of √s = 1.96 TeV is presented in this thesis. One of the two τ leptons is required to decay into a muon while the other decays hadronically. The integrated luminosity is L = 1.0-5.36 fb <sup>-1</sup>, collected by the D0 experiment at the Fermilab Tevatron Collider from 2002 to 2009 in the Run II.
Date: January 1, 2010
Creator: Yang, Wan-Ching
Object Type: Thesis or Dissertation
System: The UNT Digital Library
VOMS/VOMRS utilization patterns and convergence plan (open access)

VOMS/VOMRS utilization patterns and convergence plan

The Grid community uses two well-established registration services, which allow users to be authenticated under the auspices of Virtual Organizations (VOs). The Virtual Organization Membership Service (VOMS), developed in the context of the Enabling Grid for E-sciencE (EGEE) project, is an Attribute Authority service that issues attributes expressing membership information of a subject within a VO. VOMS allows to partition users in groups, assign them roles and free-form attributes which are then used to drive authorization decisions. The VOMS administrative application, VOMS-Admin, manages and populates the VOMS database with membership information. The Virtual Organization Management Registration Service (VOMRS), developed at Fermilab, extends the basic registration and management functionalities present in VOMS-Admin. It implements a registration workflow that requires VO usage policy acceptance and membership approval by administrators. VOMRS supports management of multiple grid certificates, and handling users' request for group and role assignments, and membership status. VOMRS is capable of interfacing to local systems with personnel information (e.g. the CERN Human Resource Database) and of pulling relevant member information from them. VOMRS synchronizes the relevant subset of information with VOMS. The recent development of new features in VOMS-Admin raises the possibility of rationalizing the support and converging on a single …
Date: January 1, 2010
Creator: Ceccanti, A.; Ciaschini, V.; Dimou, M.; Garzoglio, G.; Levshina, T.; Traylen, S. et al.
Object Type: Article
System: The UNT Digital Library
Fifth Annual Report: 2008 Pre-Construction Eelgrass Monitoring and Propagation for King County Outfall Mitigation (open access)

Fifth Annual Report: 2008 Pre-Construction Eelgrass Monitoring and Propagation for King County Outfall Mitigation

This is the fifth and final report in a series documenting progress of the pre-construction eelgrass restoration and mitigation activities for the proposed King County Brightwater marine outfall, discharging to Puget Sound near Point Wells, Washington. King County began implementing a multiyear eelgrass monitoring and restoration program in 2004, with the primary goal of returning intertidal and shallow subtidal habitat and eelgrass to pre-construction conditions, after construction of the outfall. Major eelgrass mitigation program elements include: a) pre-construction monitoring, i.e., documenting initial eelgrass conditions and degree of fluctuation over a 5 year period prior to construction, b) eelgrass transplanting, including harvesting, offsite propagation and stockpiling of local plants for post-construction planting, and c) post-construction planting and subsequent monitoring, occurring in 2009 and beyond. The overall program is detailed in the Eelgrass Restoration and Biological Resources Implementation Workplan (King County 2008).
Date: January 1, 2010
Creator: Woodruff, Dana L.; Judd, Chaeli; Thom, Ronald M.; Sather, Nichole K. & Kaufmann, Ronald M.
Object Type: Report
System: The UNT Digital Library
A grid job monitoring system (open access)

A grid job monitoring system

This paper presents a web-based Job Monitoring framework for individual Grid sites that allows users to follow in detail their jobs in quasi-real time. The framework consists of several independent components: (a) a set of sensors that run on the site CE and worker nodes and update a database, (b) a simple yet extensible web services framework and (c) an Ajax powered web interface having a look-and-feel and control similar to a desktop application. The monitoring framework supports LSF, Condor and PBS-like batch systems. This is one of the first monitoring systems where an X.509 authenticated web interface can be seamlessly accessed by both end-users and site administrators. While a site administrator has access to all the possible information, a user can only view the jobs for the Virtual Organizations (VO) he/she is a part of. The monitoring framework design supports several possible deployment scenarios. For a site running a supported batch system, the system may be deployed as a whole, or existing site sensors can be adapted and reused with the web services components. A site may even prefer to build the web server independently and choose to use only the Ajax powered web interface. Finally, the system is …
Date: January 1, 2010
Creator: Dumitrescu, Catalin; Nowack, Andreas; Padhi, Sanjay & Sarkar, Subir
Object Type: Article
System: The UNT Digital Library
Investigations into the origins of polyatomic ions in inductively coupled plasma-mass spectrometry (open access)

Investigations into the origins of polyatomic ions in inductively coupled plasma-mass spectrometry

An inductively coupled plasma-mass spectrometer (ICP-MS) is an elemental analytical instrument capable of determining nearly all elements in the periodic table at limits of detection in the parts per quadrillion and with a linear analytical range over 8-10 orders of magnitude. Three concentric quartz tubes make up the plasma torch. Argon gas is spiraled through the outer tube and generates the plasma powered by a looped load coil operating at 27.1 or 40.6 MHz. The argon flow of the middle channel is used to keep the plasma above the innermost tube through which solid or aqueous sample is carried in a third argon stream. A sample is progressively desolvated, atomized and ionized. The torch is operated at atmospheric pressure. To reach the reduced pressures of mass spectrometers, ions are extracted through a series of two, approximately one millimeter wide, circular apertures set in water cooled metal cones. The space between the cones is evacuated to approximately one torr. The space behind the second cone is pumped down to, or near to, the pressure needed for the mass spectrometer (MS). The first cone, called the sampler, is placed directly in the plasma plume and its position is adjusted to the point …
Date: January 1, 2010
Creator: McIntyre, Sally M.
Object Type: Thesis or Dissertation
System: The UNT Digital Library
Imaging doped silicon test structures using low energy electron microscopy. (open access)

Imaging doped silicon test structures using low energy electron microscopy.

This document is the final SAND Report for the LDRD Project 105877 - 'Novel Diagnostic for Advanced Measurements of Semiconductor Devices Exposed to Adverse Environments' - funded through the Nanoscience to Microsystems investment area. Along with the continuous decrease in the feature size of semiconductor device structures comes a growing need for inspection tools with high spatial resolution and high sample throughput. Ideally, such tools should be able to characterize both the surface morphology and local conductivity associated with the structures. The imaging capabilities and wide availability of scanning electron microscopes (SEMs) make them an obvious choice for imaging device structures. Dopant contrast from pn junctions using secondary electrons in the SEM was first reported in 1967 and more recently starting in the mid-1990s. However, the serial acquisition process associated with scanning techniques places limits on the sample throughput. Significantly improved throughput is possible with the use of a parallel imaging scheme such as that found in photoelectron emission microscopy (PEEM) and low energy electron microscopy (LEEM). The application of PEEM and LEEM to device structures relies on contrast mechanisms that distinguish differences in dopant type and concentration. Interestingly, one of the first applications of PEEM was a study of …
Date: January 1, 2010
Creator: Nakakura, Craig Yoshimi; Anderson, Meredith Lynn & Kellogg, Gary Lee
Object Type: Report
System: The UNT Digital Library
Overcharge Protection for 4 V Lithium Batteries at High Rates and Low Temperature (open access)

Overcharge Protection for 4 V Lithium Batteries at High Rates and Low Temperature

Overcharge protection for 4 V Li{sub 1.05}Mn{sub 1.95}O{sub 4}/lithium cells at charging rates in excess of 1 mA/cm{sup 2} (3C) and at temperatures as low as -20 C was achieved using a bilayer separator coated with two electroactive polymers. High rate and low temperature overcharge protection and discharge performance were improved by employing a design in which the polymer-coated portion of the separator is in parallel with the cell rather than between the electrodes. The effects of different membrane supports for the electroactive polymers are also examined.
Date: January 4, 2010
Creator: Chen, Guoying & Richardson, Thomas J.
Object Type: Article
System: The UNT Digital Library
Fabrication, structure and mechanical properties of indium nanopillars (open access)

Fabrication, structure and mechanical properties of indium nanopillars

Solid and hollow cylindrical indium pillars with nanoscale diameters were prepared using electron beam lithography followed by the electroplating fabrication method. The microstructure of the solid-core indium pillars was characterized by scanning micro-X-ray diffraction, which shows that the indium pillars were annealed at room temperature with very few dislocations remaining in the samples. The mechanical properties of the solid pillars were characterized using a uniaxial microcompression technique, which demonstrated that the engineering yield stress is {approx}9 times greater than bulk and is {approx}1/28 of the indium shear modulus, suggesting that the attained stresses are close to theoretical strength. Microcompression of hollow indium nanopillars showed evidence of brittle fracture. This may suggest that the failure mode for one of the most ductile metals can become brittle when the feature size is sufficiently small.
Date: January 1, 2010
Creator: Lee, Gyuhyon; Kim, Ju-Young; Budiman, Arief Suriadi; Tamura, Nobumichi; Kunz, Martin; Chen, Kai et al.
Object Type: Article
System: The UNT Digital Library
Novel Anionic Clay Adsorbents for Boiler-Blow-Down Waters Reclaim and Reuse (open access)

Novel Anionic Clay Adsorbents for Boiler-Blow-Down Waters Reclaim and Reuse

Arsenic (As) and Selenium (Se) are found in water in the form of oxyanions. Relatively high concentrations of As and Se have been reported both in power plant discharges, as well as, in fresh water supplies. The International Agency for Research on Cancer currently classifies As as a group 1 chemical, that is considered to be carcinogenic to humans. In Phase I of this project we studied the adsorption of As and Se by uncalcined and calcined layered double hydroxide (LDH). The focus of the present work is a systematic study of the adsorption of As and Se by conditioned LDH adsorbents. Conditioning the adsorbent significantly reduced the Mg and Al dissolution observed with uncalcined and calcined LDH. The adsorption rates and isotherms have been investigated in batch experiments using particles of four different particle size ranges. As(V) adsorption is shown to follow a Sips-type adsorption isotherm. The As(V) adsorption rate on conditioned LDH increases with decreasing adsorbent particle size; the adsorption capacity, on the other hand, is independent of the particle size. A homogeneous surface diffusion model (HSDM) and a bi-disperse pore model (BPM) - the latter viewing the LDH particles as assemblages of microparticles and taking into account …
Date: January 8, 2010
Creator: Sahimi, Muhammad & Tsotsis, Theodore
Object Type: Report
System: The UNT Digital Library
Modulation compression for short wavelength harmonic generation (open access)

Modulation compression for short wavelength harmonic generation

Laser modulator is used to seed free electron lasers. In this paper, we propose a scheme to compress the initial laser modulation in the longitudinal phase space by using two opposite sign bunch compressors and two opposite sign energy chirpers. This scheme could potentially reduce the initial modulation wavelength by a factor of C and increase the energy modulation amplitude by a factor of C, where C is the compression factor of the first bunch compressor. Such a compressed energy modulation can be directly used to generate short wavelength current modulation with a large bunching factor.
Date: January 11, 2010
Creator: Qiang, J.
Object Type: Article
System: The UNT Digital Library
The TAOS Project Stellar Variability II. Detection of 15 Variable Stars (open access)

The TAOS Project Stellar Variability II. Detection of 15 Variable Stars

The Taiwanese-American Occultation Survey (TAOS) project has collected more than a billion photometric measurements since 2005 January. These sky survey data - covering timescales from a fraction of a second to a few hundred days - are a useful source to study stellar variability. A total of 167 star fields, mostly along the ecliptic plane, have been selected for photometric monitoring with the TAOS telescopes. This paper presents our initial analysis of a search for periodic variable stars from the time-series TAOS data on one particular TAOS field, No. 151 (RA = 17{sup h} 30{sup m} 6.67{sup s}, Dec = 27 degrees, 17 minutes, 30 seconds, J2000), which had been observed over 47 epochs in 2005. A total of 81 candidate variables are identified in the 3 square degree field, with magnitudes in the range 8 &lt; R &lt; 16. On the basis of the periodicity and shape of the lightcurves, 32 variables, 18 of which were previously unknown, are classified as RR Lyrae, Cepheid, {delta} Scuti, SX Phonencis, semi-regular and eclipsing binaries.
Date: January 28, 2010
Creator: Mondal, S.; Lin, C. C.; Zhang, Z. W.; Alcock, C.; Axelrod, T.; Bianco, F. B. et al.
Object Type: Article
System: The UNT Digital Library
Lightweight storage and overlay networks for fault tolerance. (open access)

Lightweight storage and overlay networks for fault tolerance.

The next generation of capability-class, massively parallel processing (MPP) systems is expected to have hundreds of thousands to millions of processors, In such environments, it is critical to have fault-tolerance mechanisms, including checkpoint/restart, that scale with the size of applications and the percentage of the system on which the applications execute. For application-driven, periodic checkpoint operations, the state-of-the-art does not provide a scalable solution. For example, on today's massive-scale systems that execute applications which consume most of the memory of the employed compute nodes, checkpoint operations generate I/O that consumes nearly 80% of the total I/O usage. Motivated by this observation, this project aims to improve I/O performance for application-directed checkpoints through the use of lightweight storage architectures and overlay networks. Lightweight storage provide direct access to underlying storage devices. Overlay networks provide caching and processing capabilities in the compute-node fabric. The combination has potential to signifcantly reduce I/O overhead for large-scale applications. This report describes our combined efforts to model and understand overheads for application-directed checkpoints, as well as implementation and performance analysis of a checkpoint service that uses available compute nodes as a network cache for checkpoint operations.
Date: January 1, 2010
Creator: Oldfield, Ron A.
Object Type: Report
System: The UNT Digital Library
3D Simulations of the NIF Indirect Drive Ignition Target Design (open access)

3D Simulations of the NIF Indirect Drive Ignition Target Design

The radiation hydrodynamics code Hydra is used to quantify the sensitivity of different NIF ignition point designs to several 3D effects. Each of the 48 NIF quads is included in the calculations and is allowed to have different power. With this model they studied the effect on imploded core symmetry of discrete laser spots (as opposed to idealized azimuthally-averaged rings) and random variations in laser power.
Date: January 5, 2010
Creator: Jones, O. S.; Milovich, J. L.; Callahan, D. A.; Edwards, M. J.; Landen, O. L.; Salmonson, J. D. et al.
Object Type: Article
System: The UNT Digital Library
Impacts of Mixing on Acceptable Indoor Air Quality in Homes (open access)

Impacts of Mixing on Acceptable Indoor Air Quality in Homes

Ventilation reduces occupant exposure to indoor contaminants by diluting or removing them. In a multi-zone environment such as a house, every zone will have different dilution rates and contaminant source strengths. The total ventilation rate is the most important factor in determining occupant exposure to given contaminant sources, but the zone-specific distribution of exhaust and supply air and the mixing of ventilation air can play significant roles. Different types of ventilation systems will provide different amounts of mixing depending on several factors such as air leakage, air distribution system, and contaminant source and occupant locations. Most U.S. and Canadian homes have central heating, ventilation, and air conditioning systems, which tend to mix the air; thus, the indoor air in different zones tends to be well mixed for significant fractions of the year. This article reports recent results of investigations to determine the impact of air mixing on exposures of residential occupants to prototypical contaminants of concern. We summarize existing literature and extend past analyses to determine the parameters than affect air mixing as well as the impacts of mixing on occupant exposure, and to draw conclusions that are relevant for standards development and for practitioners designing and installing home ventilation …
Date: January 1, 2010
Creator: Sherman, Max H. & Walker, Iain I.
Object Type: Article
System: The UNT Digital Library
High statistics analysis using anisotropic clover lattices: (III) Baryon-baryon interactions (open access)

High statistics analysis using anisotropic clover lattices: (III) Baryon-baryon interactions

Low-energy baryon-baryon interactions are calculated in a high-statistics lattice QCD study on a single ensemble of anisotropic clover gauge-field configurations at a pion mass of m{sub {pi}} {approx} 390 MeV, a spatial volume of L{sup 3} {approx} (2.5 fm){sup 3}, and a spatial lattice spacing of b {approx} 0.123 fm. Luescher's method is used to extract nucleon-nucleon, hyperon-nucleon and hyperon-hyperon scattering phase shifts at one momentum from the one- and two-baryon ground-state energies in the lattice volume. The isospin-3/2 N{Sigma} interactions are found to be highly spin-dependent, and the interaction in the {sup 3}S{sub 1} channel is found to be strong. In contrast, the N{Lambda} interactions are found to be spin-independent, within the uncertainties of the calculation, consistent with the absence of one-pion-exchange. The only channel for which a negative energy-shift is found is {Lambda}{Lambda}, indicating that the {Lambda}{Lambda} interaction is attractive, as anticipated from model-dependent discussions regarding the H-dibaryon. The NN scattering lengths are found to be small, clearly indicating the absence of any fine-tuning in the NN-sector at this pion mass. This is consistent with our previous Lattice QCD calculation of NN interactions. The behavior of the signal-to-noise ratio in the baryon-baryon correlation functions, and in the ratio …
Date: January 19, 2010
Creator: Beane, S; Detmold, W; Lin, H; Luu, T; Orginos, K; Savage, M et al.
Object Type: Article
System: The UNT Digital Library
Strain Induced Magnetism in SrRuO3 Epitaxial Thin Films (open access)

Strain Induced Magnetism in SrRuO3 Epitaxial Thin Films

Epitaxial SrRuO{sub 3} thin films were grown on SrTiO{sub 3}, (LaAlO{sub 3}){sub 0.3}(SrAlO{sub 3}){sub 0.7} and LaAlO{sub 3} substrates inducing different biaxial compressive strains. Coherently strained SrRuO{sub 3} films exhibit enhanced magnetization compared to previously reported bulk and thin film values of 1.1-1.6 {micro}{sub B} per formula unit. A comparison of (001) and (110) SrRuO{sub 3} films on each substrate indicates that films on (110) oriented have consistently higher saturated moments than corresponding (001) films. These observations indicate the importance of lattice distortions in controlling the magnetic ground state in this transitional metal oxide.
Date: January 10, 2010
Creator: Grutter, A.; Wong, F.; Arenholz, E.; Liberati, M. & Suzuki, Y.
Object Type: Article
System: The UNT Digital Library
Reply to Comment on&quot;Coherent rho0 photoproduction in bulk matter at high energies&quot; (open access)

Reply to Comment on&quot;Coherent rho0 photoproduction in bulk matter at high energies&quot;

In their interesting comment on 'Coherent {rho}0 photoproduction in bulk matter at high energies', Rogers and Strikman point out that, at high energies, q{bar q} dipoles with small separations (d) become more important, and that most of the growth of the cross-section is 'driven by the increasingly large contributions from small size (high mass) configurations'; at photon energies of 10{sup 20} eV, over half of the total cross-section is due to dipoles smaller than 0.25 fm. They state that charm production will increase, and may be as much as 30% of the cross-section. The coherent photoproduction of heavier states requires higher energies than coherent {rho} photoproduction, because the formation length scales as 1/M{sup 2}. For the J/{psi}, the required photon energy is 14 times higher than for the {rho}. We agree that higher-mass states become important at higher energies. However, at this point, additional factors come into play; as we note after Eq. (7), our calculation is only properly normalized when the conversion probability is relatively small. At the energies where coherent production of high mass states is possible, the coherent {rho} production probability is large, and it is necessary to consider reverse reactions such as vector meson 'back-propagation' into …
Date: January 27, 2010
Creator: Couderc, E. & Klein, S.
Object Type: Article
System: The UNT Digital Library
The Porcelain Crab Transcriptome and PCAD, the Porcelain Crab Microarray and Sequence Database (open access)

The Porcelain Crab Transcriptome and PCAD, the Porcelain Crab Microarray and Sequence Database

Background: With the emergence of a completed genome sequence of the freshwater crustacean Daphnia pulex, construction of genomic-scale sequence databases for additional crustacean sequences are important for comparative genomics and annotation. Porcelain crabs, genus Petrolisthes, have been powerful crustacean models for environmental and evolutionary physiology with respect to thermal adaptation and understanding responses of marine organisms to climate change. Here, we present a large-scale EST sequencing and cDNA microarray database project for the porcelain crab Petrolisthes cinctipes. Methodology/Principal Findings: A set of ~;;30K unique sequences (UniSeqs) representing ~;;19K clusters were generated from ~;;98K high quality ESTs from a set of tissue specific non-normalized and mixed-tissue normalized cDNA libraries from the porcelain crab Petrolisthes cinctipes. Homology for each UniSeq was assessed using BLAST, InterProScan, GO and KEGG database searches. Approximately 66percent of the UniSeqs had homology in at least one of the databases. All EST and UniSeq sequences along with annotation results and coordinated cDNA microarray datasets have been made publicly accessible at the Porcelain Crab Array Database (PCAD), a feature-enriched version of the Stanford and Longhorn Array Databases.Conclusions/Significance: The EST project presented here represents the third largest sequencing effort for any crustacean, and the largest effort for any crab species. …
Date: January 27, 2010
Creator: Tagmount, Abderrahmane; Wang, Mei; Lindquist, Erika; Tanaka, Yoshihiro; Teranishi, Kristen S.; Sunagawa, Shinichi et al.
Object Type: Article
System: The UNT Digital Library
Targeted deletion of the 9p21 noncoding coronary artery disease risk interval in mice (open access)

Targeted deletion of the 9p21 noncoding coronary artery disease risk interval in mice

Sequence polymorphisms in a 58kb interval on chromosome 9p21 confer a markedly increased risk for coronary artery disease (CAD), the leading cause of death worldwide 1,2. The variants have a substantial impact on the epidemiology of CAD and other life?threatening vascular conditions since nearly a quarter of Caucasians are homozygous for risk alleles. However, the risk interval is devoid of protein?coding genes and the mechanism linking the region to CAD risk has remained enigmatic. Here we show that deletion of the orthologous 70kb noncoding interval on mouse chromosome 4 affects cardiac expression of neighboring genes, as well as proliferation properties of vascular cells. Chr4delta70kb/delta70kb mice are viable, but show increased mortality both during development and as adults. Cardiac expression of two genes near the noncoding interval, Cdkn2a and Cdkn2b, is severely reduced in chr4delta70kb/delta70kb mice, indicating that distant-acting gene regulatory functions are located in the noncoding CAD risk interval. Allelespecific expression of Cdkn2b transcripts in heterozygous mice revealed that the deletion affects expression through a cis-acting mechanism. Primary cultures of chr4delta70kb/delta70kb aortic smooth muscle cells exhibited excessive proliferation and diminished senescence, a cellular phenotype consistent with accelerated CAD pathogenesis. Taken together, our results provide direct evidence that the CAD risk …
Date: January 1, 2010
Creator: Visel, Axel; Zhu, Yiwen; May, Dalit; Afzal, Veena; Gong, Elaine; Attanasio, Catia et al.
Object Type: Article
System: The UNT Digital Library