Limits of NbTi and Nb3Sn, and Development of W&R Bi-2212 HighField Accelerator Magnets (open access)

Limits of NbTi and Nb3Sn, and Development of W&R Bi-2212 HighField Accelerator Magnets

NbTi accelerator dipoles are limited to magnetic fields (H)of about 10 T, due to an intrinsic upper critical field(Hc2) limitationof 14 T. To surpass this restriction, prototype Nb3Sn magnets are beingdeveloped which have reached 16 T. We show that Nb3Sn dipole technologyis practically limited to 17 to 18 T due to insufficient high fieldpinning, and intrinsically to 20 to 22 T due to Hc2 limitations.Therefore, to obtain magnetic fields approaching 20 T and higher, amaterial is required with a higher Hc2 and sufficient high field pinningcapacity. A realistic candidate for this purpose is Bi-2212, which isavailable in roundwires and sufficient lengths for the fabrication ofcoils based on Rutherford-type cables. We initiated a program to developthe required technology to construct accelerator magnets from'windand-react' (W&R) Bi-2212 coils. We outline the complicationsthat arise through the use of Bi-2212, describe the development paths toaddress these issues, and conclude with the design of W&R Bi-2212sub-scale magnets.
Date: December 1, 2006
Creator: Godeke, A.; Cheng, D.; Dietderich, D. R.; Ferracin, P.; Prestemon, S. O.; Sabbi, G. et al.
Object Type: Article
System: The UNT Digital Library
Comparative Genomics and Evolution of Eukaryotic Phospholipid biosynthesis (open access)

Comparative Genomics and Evolution of Eukaryotic Phospholipid biosynthesis

Phospholipid biosynthetic enzymes produce diverse molecular structures and are often present in multiple forms encoded by different genes. This work utilizes comparative genomics and phylogenetics for exploring the distribution, structure and evolution of phospholipid biosynthetic genes and pathways in 26 eukaryotic genomes. Although the basic structure of the pathways was formed early in eukaryotic evolution, the emerging picture indicates that individual enzyme families followed unique evolutionary courses. For example, choline and ethanolamine kinases and cytidylyltransferases emerged in ancestral eukaryotes, whereas, multiple forms of the corresponding phosphatidyltransferases evolved mainly in a lineage specific manner. Furthermore, several unicellular eukaryotes maintain bacterial-type enzymes and reactions for the synthesis of phosphatidylglycerol and cardiolipin. Also, base-exchange phosphatidylserine synthases are widespread and ancestral enzymes. The multiplicity of phospholipid biosynthetic enzymes has been largely generated by gene expansion in a lineage specific manner. Thus, these observations suggest that phospholipid biosynthesis has been an actively evolving system. Finally, comparative genomic analysis indicates the existence of novel phosphatidyltransferases and provides a candidate for the uncharacterized eukaryotic phosphatidylglycerol phosphate phosphatase.
Date: December 1, 2006
Creator: Lykidis, Athanasios
Object Type: Article
System: The UNT Digital Library
A brief comparison between grid based real space algorithms andspectrum algorithms for electronic structure calculations (open access)

A brief comparison between grid based real space algorithms andspectrum algorithms for electronic structure calculations

Quantum mechanical ab initio calculation constitutes the biggest portion of the computer time in material science and chemical science simulations. As a computer center like NERSC, to better serve these communities, it will be very useful to have a prediction for the future trends of ab initio calculations in these areas. Such prediction can help us to decide what future computer architecture can be most useful for these communities, and what should be emphasized on in future supercomputer procurement. As the size of the computer and the size of the simulated physical systems increase, there is a renewed interest in using the real space grid method in electronic structure calculations. This is fueled by two factors. First, it is generally assumed that the real space grid method is more suitable for parallel computation for its limited communication requirement, compared with spectrum method where a global FFT is required. Second, as the size N of the calculated system increases together with the computer power, O(N) scaling approaches become more favorable than the traditional direct O(N{sup 3}) scaling methods. These O(N) methods are usually based on localized orbital in real space, which can be described more naturally by the real space basis. …
Date: December 1, 2006
Creator: Wang, Lin-Wang
Object Type: Report
System: The UNT Digital Library
Effectiveness of Urban Shelter-in-Place. II: ResidentialDistricts (open access)

Effectiveness of Urban Shelter-in-Place. II: ResidentialDistricts

In the event of a short-term, large-scale toxic chemical release to the atmosphere, shelter-in-place (SIP) may be used as an emergency response to protect public health. We modeled hypothetical releases using realistic, empirical parameters to explore how key factors influence SIP effectiveness for single-family dwellings in a residential district. Four classes of factors were evaluated in this case-study: (a) time scales associated with release duration, SIP implementation delay, and SIP termination; (b) building air-exchange rates, including air infiltration and ventilation; (c) the degree of sorption of toxic chemicals to indoor surfaces; and (d) the shape of the dose-response relationship for acute adverse health effects. Houses with lower air leakage are more effective shelters, and thus variability in the air leakage of dwellings is associated with varying degrees of SIP protection in a community. Sorption on indoor surfaces improves SIP effectiveness by lowering the peak indoor concentrations and reducing the amount of contamination in the indoor air. Nonlinear dose-response relationships imply substantial reduction in adverse health effects from lowering the peak exposure concentration. However, if the scenario is unfavorable for sheltering (e.g. sheltering in leaky houses for protection against a nonsorbing chemical with a linear dose-response), the community must implement SIP …
Date: December 1, 2006
Creator: Chan, Wanyu R.; Nazaroff, William W.; Price, Phillip N. & Gadgil, Ashok J.
Object Type: Article
System: The UNT Digital Library
Biclustering Protein Complex Interactions with a Biclique Finding Algorithm (open access)

Biclustering Protein Complex Interactions with a Biclique Finding Algorithm

Biclustering has many applications in text mining, web clickstream mining, and bioinformatics. When data entries are binary, the tightest biclusters become bicliques. We propose a flexible and highly efficient algorithm to compute bicliques. We first generalize the Motzkin-Straus formalism for computing the maximal clique from L{sub 1} constraint to L{sub p} constraint, which enables us to provide a generalized Motzkin-Straus formalism for computing maximal-edge bicliques. By adjusting parameters, the algorithm can favor biclusters with more rows less columns, or vice verse, thus increasing the flexibility of the targeted biclusters. We then propose an algorithm to solve the generalized Motzkin-Straus optimization problem. The algorithm is provably convergent and has a computational complexity of O(|E|) where |E| is the number of edges. It relies on a matrix vector multiplication and runs efficiently on most current computer architectures. Using this algorithm, we bicluster the yeast protein complex interaction network. We find that biclustering protein complexes at the protein level does not clearly reflect the functional linkage among protein complexes in many cases, while biclustering at protein domain level can reveal many underlying linkages. We show several new biologically significant results.
Date: December 1, 2006
Creator: Ding, Chris; Zhang, Anne Ya & Holbrook, Stephen
Object Type: Article
System: The UNT Digital Library
Demand Response For Power System Reliability: FAQ (open access)

Demand Response For Power System Reliability: FAQ

Demand response is the most underutilized power system reliability resource in North America. Technological advances now make it possible to tap this resource to both reduce costs and improve. Misconceptions concerning response capabilities tend to force loads to provide responses that they are less able to provide and often prohibit them from providing the most valuable reliability services. Fortunately this is beginning to change with some ISOs making more extensive use of load response. This report is structured as a series of short questions and answers that address load response capabilities and power system reliability needs. Its objective is to further the use of responsive load as a bulk power system reliability resource in providing the fastest and most valuable ancillary services.
Date: December 1, 2006
Creator: Kirby, Brendan J
Object Type: Report
System: The UNT Digital Library
Remote-Handled Transuranic Content Codes (open access)

Remote-Handled Transuranic Content Codes

The Remote-Handled Transuranic (RH-TRU) Content Codes (RH-TRUCON) document describes the inventory of RH-TRU waste within the transportation parameters specified by the Remote-Handled Transuranic Waste Authorized Methods for Payload Control (RH-TRAMPAC).1 The RH-TRAMPAC defines the allowable payload for the RH-TRU 72-B. This document is a catalog of RH-TRU 72-B authorized contents by site. A content code is defined by the following components: • A two-letter site abbreviation that designates the physical location of the generated/stored waste (e.g., ID for Idaho National Laboratory [INL]). The site-specific letter designations for each of the sites are provided in Table 1. • A three-digit code that designates the physical and chemical form of the waste (e.g., content code 317 denotes TRU Metal Waste). For RH-TRU waste to be transported in the RH-TRU 72-B, the first number of this three-digit code is “3.” The second and third numbers of the three-digit code describe the physical and chemical form of the waste. Table 2 provides a brief description of each generic code. Content codes are further defined as subcodes by an alpha trailer after the three-digit code to allow segregation of wastes that differ in one or more parameter(s). For example, the alpha trailers of the subcodes …
Date: December 1, 2006
Creator: Solutions, Washington TRU
Object Type: Report
System: The UNT Digital Library
SUMMER SCHOOLS IN NUCLEAR CHEMISTRY (open access)

SUMMER SCHOOLS IN NUCLEAR CHEMISTRY

The is the report for the 5 year activities for the ACS Summer Schools in Nuclear and Radiochemistry
Date: December 1, 2006
Creator: Clark, Sue; Herbert, Mieva & Mantica, Paul
Object Type: Report
System: The UNT Digital Library
LDRD final report on "controlled synthesis of nanocrystalline catalysts <U+2013> from solutions to supports". (open access)

LDRD final report on "controlled synthesis of nanocrystalline catalysts <U+2013> from solutions to supports".

Control of nanoparticle size is crucial to the development of nanotechnology. At this point in time, no general, rational synthetic strategy for controlling nanocrystal diameters and producing narrow diameter distributions has emerged. This is a reflection of a poor understanding of the mechanisms for nanocrystal growth. Based on previous studies of bismuth and gold nanoparticle growth, this work clearly establishes two new synthetic approaches to controlled growth of colloidal Pt nanocrystals, both based on aggregative-growth mechanisms, which afford narrow size distributions and size control over a wide and relevant size regime. The first new method is a phase transfer process, where growth is controlled by varying ligand stabilizer concentrations. The second method involves rapid reduction of a molecular platinum precursor in the presence of a polymer stabilizer. At present the size control is empirical, and incompletely understood and incompletely developed. However, the new synthetic pathways are amenable to kinetic study and analysis, establishing that a quantitative, rational control of sizes and size distributions can be achieved.
Date: December 1, 2006
Creator: Buhro, William E. (Washington University in St. Louis, St. Louis, MO); Richards, Vernal (Washington University in St. Louis, St. Louis, MO); Lattman, Micheal; Resler, Shawn P. (Washington University in St. Louis, St. Louis, MO) & Kemp, Richard Alan
Object Type: Report
System: The UNT Digital Library
ACRF Instrumentation Status: New, Current, and Future November-December 2006 (open access)

ACRF Instrumentation Status: New, Current, and Future November-December 2006

The purpose of this report is to provide a concise but comprehensive overview of Atmospheric Radiation Measurement Program Climate Research Facility instrumentation status. The report is divided into four sections: (1) new instrumentation in the process of being acquired and deployed, (2) existing instrumentation and progress on improvements or upgrades, (3) proposed future instrumentation, and (4) Small Business Innovation Research instrument development.
Date: December 1, 2006
Creator: Liljegren, J. C.
Object Type: Report
System: The UNT Digital Library
Risk assessment meta tool LDRD final report. (open access)

Risk assessment meta tool LDRD final report.

The goal of this project was to develop a risk analysis meta tool--a tool that enables security analysts both to combine and analyze data from multiple other risk assessment tools on demand. Our approach was based on the innovative self-assembling software technology under development by the project team. This technology provides a mechanism for the user to specify his intentions at a very high level (e.g., equations or English-like text), and then the code self-assembles itself, taking care of the implementation details. The first version of the meta tool focused specifically in importing and analyzing data from Joint Conflict and Tactical Simulation (JCATS) force-on-force simulation. We discuss the problem, our approach, technical risk, and accomplishments on this project, and outline next steps to be addressed with follow-on funding.
Date: December 1, 2006
Creator: Bouchard, Ann Marie & Osbourn, Gordon Cecil
Object Type: Report
System: The UNT Digital Library
Small acid soluble proteins for rapid spore identification. (open access)

Small acid soluble proteins for rapid spore identification.

This one year LDRD addressed the problem of rapid characterization of bacterial spores such as those from the genus Bacillus, the group that contains pathogenic spores such as B. anthracis. In this effort we addressed the feasibility of using a proteomics based approach to spore characterization using a subset of conserved spore proteins known as the small acid soluble proteins or SASPs. We proposed developing techniques that built on our previous expertise in microseparations to rapidly characterize or identify spores. An alternative SASP extraction method was developed that was amenable to both the subsequent fluorescent labeling required for laser-induced fluorescence detection and the low ionic strength requirements for isoelectric focusing. For the microseparations, both capillary isoelectric focusing and chip gel electrophoresis were employed. A variety of methods were evaluated to improve the molecular weight resolution for the SASPs, which are in a molecular weight range that is not well resolved by the current methods. Isoelectric focusing was optimized and employed to resolve the SASPs using UV absorbance detection. Proteomic signatures of native wild type Bacillus spores and clones genetically engineered to produce altered SASP patterns were assessed by slab gel electrophoresis, capillary isoelectric focusing with absorbance detection as well as …
Date: December 1, 2006
Creator: Branda, Steven S.; Lane, Todd W.; VanderNoot, Victoria A. & Jokerst, Amanda S.
Object Type: Report
System: The UNT Digital Library