Fiscal Year 2006 Washington Closure Hanford Science & Technology Plan (open access)

Fiscal Year 2006 Washington Closure Hanford Science & Technology Plan

This Washington Closure Hanford science and technology (S&T) plan documents the activities associated with providing S&T support to the River Corridor Closure Project for fiscal year 2006.
Date: January 19, 2006
Creator: K.J. Kroegler, M. Truex, D.J. McBride
Object Type: Report
System: The UNT Digital Library
Biased Cosmology: Pivots, Parameters, and Figures of Merit (open access)

Biased Cosmology: Pivots, Parameters, and Figures of Merit

In the quest for precision cosmology, one must ensure that the cosmology is accurate as well. We discuss figures of merit for determining from observations whether the dark energy is a cosmological constant or dynamical, with special attention to the best determined equation of state value, at the ``pivot'' or decorrelation redshift. We show this is not necessarily the best lever on testing consistency with the cosmological constant, and moreover is subject to bias. The standard parametrization of w(a)=w_0+w_a(1-a) by contrast is quite robust, as tested by extensions to higher order parametrizations and modified gravity. Combination of complementary probes gives strong immunization against inaccurate, but precise, cosmology.
Date: June 19, 2006
Creator: Linder, Eric V.
Object Type: Article
System: The UNT Digital Library
Application of the TraPPE force field to predicting isothermal pressure-volume curves at high pressures and high temperatures (open access)

Application of the TraPPE force field to predicting isothermal pressure-volume curves at high pressures and high temperatures

Knowledge of the thermophysical properties of materials at extreme pressure and temperature conditions is essential for improving our understanding of many planetary and detonation processes. Significant gaps in what is known about the behavior of materials at high density and high temperature exist, largely due to the limitations and dangers of performing experiments at the necessary extreme conditions. Modeling these systems through the use of equations of state and particle-based simulation methods significantly extends the range of pressures and temperatures that can be safely studied. The reliability of such calculations depends on the accuracy of the models used. Here we present an assessment of the united-atom version of the TraPPE (Transferable Potentials for Phase Equilibria) force field and single-site exp-6 representations for methane, methanol, oxygen, and ammonia at extreme conditions. As shown by Monte Carlo simulations in the isobaric-isothermal ensemble, the TraPPE models, despite being parameterized to the vapor-liquid coexistence curve (i.e. relatively mild conditions), perform remarkably well in the high pressure/high temperature regime. The single-site exp-6 models can fit experimental data in the high pressure/temperature regime very well, but the parameters are less transferable to ambient conditions.
Date: May 19, 2006
Creator: Eggimann, B L; Siepmann, J I & Fried, L E
Object Type: Article
System: The UNT Digital Library
An optimal point spread function subtraction algorithm for high-contrast imaging: a demonstration with angular differential imaging (open access)

An optimal point spread function subtraction algorithm for high-contrast imaging: a demonstration with angular differential imaging

Direct imaging of exoplanets is limited by bright quasi-static speckles in the point spread function (PSF) of the central star. This limitation can be reduced by subtraction of reference PSF images. We have developed an algorithm to construct an optimal reference PSF image from an arbitrary set of reference images. This image is built as a linear combination of all available images and is optimized independently inside multiple subsections of the image to ensure that the absolute minimum residual noise is achieved within each subsection. The algorithm developed is completely general and can be used with many high contrast imaging observing strategies, such as angular differential imaging (ADI), roll subtraction, spectral differential imaging, reference star observations, etc. The performance of the algorithm is demonstrated for ADI data. It is shown that for this type of data the new algorithm provides a gain in sensitivity by up 22 to a factor 3 at small separation over the algorithm previously used.
Date: September 19, 2006
Creator: Lafreniere, D; Marois, C; Doyon, R; Artigau, E & Nadeau, D
Object Type: Article
System: The UNT Digital Library
Epigenetic reversion of breast carcinoma phenotype is accompanied by DNA sequestration (open access)

Epigenetic reversion of breast carcinoma phenotype is accompanied by DNA sequestration

The importance of microenvironment and context in regulation of tissue-specific genes is finally well established. DNA exposure to, or sequestration from, nucleases can be used to detect differences in higher order chromatin structure in intact cells without disturbing cellular or tissue architecture. To investigate the relationship between chromatin organization and tumor phenotype, we utilized an established 3-D assay where normal and malignant human breast cells can be easily distinguished by the morphology of the structures they make (acinus-like vs tumor-like, respectively). We show that these phenotypes can be distinguished also by sensitivity to AluI digestion where the malignant cells are resistant to digestion relative to non-malignant cells. Reversion of the T4-2 breast cancer cells by either cAMP analogs, or a phospatidylinositol 3-kinase (P13K) inhibitor not only reverted the phenotype, but also the chromatin sensitivity to AluI. By using different cAMP-analogs, we show that the cAMP-induced phenotypic reversion, polarization, and shift in DNA organization act through a cAMP-dependent-protein-kinase A-coupled signaling pathway. Importantly, inhibitory antibody to fibronectin also reverted the malignant phenotype, polarized the acini, and changed chromatin sequestration. These experiments show not only that modifying the tumor microenvironment can alter the organization of tumor cells but also that architecture of the …
Date: July 19, 2006
Creator: Sandal, Tone; Valyi-Nagy, Klara; Spencer, Virginia A.; Folberg,Robert; Bissell, Mina J. & Maniotis, Andrew J.
Object Type: Article
System: The UNT Digital Library
Remaining Sites Verification Package for the 100-D-24, 119-D Sample Building Drywell, Waste Site Reclassification Form 2006-004 (open access)

Remaining Sites Verification Package for the 100-D-24, 119-D Sample Building Drywell, Waste Site Reclassification Form 2006-004

The 100-D-24 Sample Building Drywell waste site was a drywell that received drainage from a floor drain in the 119-D Sample Building. Confirmatory sampling was conducted on November 3, 2005. The waste site meets the remedial action objectives specified in the Remaining Sites ROD. The results of confirmatory sampling show that residual contaminant concentrations do not preclude any future uses and allow for unrestricted use of shallow zone soils. The results also demonstrate that residual contaminant concentrations are protective of groundwater and the Columbia River.
Date: September 19, 2006
Creator: Dittmer, L. M.
Object Type: Report
System: The UNT Digital Library
Solid Deuterium-Tritium Surface Roughness In A Beryllium Inertial Confinement Fusion Shell (open access)

Solid Deuterium-Tritium Surface Roughness In A Beryllium Inertial Confinement Fusion Shell

Solid deuterium-tritium (D-T) fuel layers for inertial confinement fusion experiments were formed inside of a 2 mm diameter beryllium shell and were characterized using phase-contrast enhanced x-ray imaging. The solid D-T surface roughness is found to be 0.4 {micro}m for modes 7-128 at 1.5 K below the melting temperature. The layer roughness is found to increase with decreasing temperature, in agreement with previous visible light characterization studies. However, phase-contrast enhanced x-ray imaging provides a more robust surface roughness measurement than visible light methods. The new x-ray imaging results demonstrate clearly that the surface roughness decreases with time for solid D-T layers held at 1.5 K below the melting temperature.
Date: April 19, 2006
Creator: Kozioziemski, B J; Sater, J D; Moody, J D; Montgomery, D S & Gautier, C
Object Type: Article
System: The UNT Digital Library
Monitoring international nuclear activity (open access)

Monitoring international nuclear activity

The LBNL Table of Isotopes website provides primary nuclearinformation to>150,000 different users annually. We have developedthe covert technology to identify users by IP address and country todetermine the kinds of nuclear information they are retrieving. Wepropose to develop pattern recognition software to provide an earlywarning system to identify Unusual nuclear activity by country or regionSpecific nuclear/radioactive material interests We have monitored nuclearinformation for over two years and provide this information to the FBIand LLNL. Intelligence is gleaned from the website log files. Thisproposal would expand our reporting capabilities.
Date: May 19, 2006
Creator: Firestone, R. B.
Object Type: Report
System: The UNT Digital Library
Remaining Sites Verification Package for the 1607-F7, 141-M Building Septic Tank, Waste Site Reclassification Form 2006-040 (open access)

Remaining Sites Verification Package for the 1607-F7, 141-M Building Septic Tank, Waste Site Reclassification Form 2006-040

The 1607-F7, 141-M Building Septic Tank waste site was a septic tank and drain field that received sanitary sewage from the former 141-M Building. Remedial action was performed in August and November 2005. The results of verification sampling demonstrate that residual contaminant concentrations support future unrestricted land uses that can be represented by a rural-residential scenario. These results also show that residual concentrations support unrestricted future use of shallow zone soil and that contaminant levels remaining in the soil are protective of groundwater and the Columbia River.
Date: October 19, 2006
Creator: Dittmer, L. M.
Object Type: Report
System: The UNT Digital Library
ToF-SIMS study of polycrystalline uranium after exposure to deuterium (open access)

ToF-SIMS study of polycrystalline uranium after exposure to deuterium

Time-of-flight secondary ion mass spectrometry (ToF-SIMS) is employed to examine specific features observed on a polycrystalline depleted uranium sample after exposure to high purity D{sub 2} gas. The ToF-SIMS investigation, being the first of its kind on uranium, investigates a site where the deuterated form of uranium hydride (UD{sub 3}) is clearly observed to have broken through the thin, air-formed oxide. Density functional theory calculations have been performed, which confirm the stability of, and also assign structural geometries to, the various uranium containing fragments observed with SIMS. An inclusion site was also investigated using ToF-SIMS, and these data suggest that the edges of such inclusions exhibit increased D ion, and hence H ion, diffusion when compared to the surrounding surface oxide. These results offer support to the previously published hypotheses that inclusion sites on uranium surfaces exhibit an increased probability to form hydride sites under H{sub 2} exposure.
Date: January 19, 2006
Creator: Morrall, P; Price, D; Nelson, A; Siekhaus, W; Nelson, E; Wu, K J et al.
Object Type: Article
System: The UNT Digital Library
Annual Report for Gravity Collection Lysimeter Monitoring Plan - ERDF Cells 5 and 6 (open access)

Annual Report for Gravity Collection Lysimeter Monitoring Plan - ERDF Cells 5 and 6

The data and analyses contained in this report reflect the initial characterization of construction and consolidation water in Cells 5 and 6 lysimeters. Therefore, the scope of this report will be to establish constituent levels and document dewatering activities completed to date.
Date: December 19, 2006
Creator: Remsen, W. E.
Object Type: Report
System: The UNT Digital Library
Isotopically controlled semiconductors (open access)

Isotopically controlled semiconductors

The following article is an edited transcript based on the Turnbull Lecture given by Eugene E. Haller at the 2005 Materials Research Society Fall Meeting in Boston on November 29, 2005. The David Turnbull Lectureship is awarded to recognize the career of a scientist who has made outstanding contributions to understanding materials phenomena and properties through research, writing, and lecturing, as exemplified by the life work of David Turnbull. Haller was named the 2005 David Turnbull Lecturer for his 'pioneering achievements and leadership in establishing the field of isotopically engineered semiconductors; for outstanding contributions to materials growth, doping and diffusion; and for excellence in lecturing, writing, and fostering international collaborations'. The scientific interest, increased availability, and technological promise of highly enriched isotopes have led to a sharp rise in the number of experimental and theoretical studies with isotopically controlled semiconductor crystals. This article reviews results obtained with isotopically controlled semiconductor bulk and thin-film heterostructures. Isotopic composition affects several properties such as phonon energies, band structure, and lattice constant in subtle, but, for their physical understanding, significant ways. Large isotope-related effects are observed for thermal conductivity in local vibrational modes of impurities and after neutron transmutation doping. Spectacularly sharp photoluminescence lines …
Date: June 19, 2006
Creator: Haller, Eugene E.
Object Type: Article
System: The UNT Digital Library
Modeling the impact of sea-spray on particle concentrations in a coastal city (open access)

Modeling the impact of sea-spray on particle concentrations in a coastal city

An atmospheric chemistry-transport model is used to assess the impacts of sea-spray chemistry on the particle composition in and downwind of a coastal city--Vancouver, British Columbia. Reactions in/on sea-spray affect the entire particle ensemble and particularly the size distribution of particle nitrate. Urban air quality, and particularly airborne particles, is a major concern in terms of human health impacts. Sea-spray is known to be a major component of the particle ensemble at coastal sites yet relatively few air quality models include the interaction of gases with sea-spray and the fate of the particles produced. Sea-spray is not an inert addition to the particle ensemble because heterogeneous chemistry in/on sea-spray droplets changes the droplets composition and the particle size distribution, which impacts deposition and the ion balance in different particle size fractions. It is shown that the ISOPART model is capable of simulating gas and particle concentrations in the coastal metropolis of Vancouver and the surrounding valley. It is also demonstrated that to accurately simulate ambient concentrations of particles and reactive/soluble gases in a coastal valley it is absolutely critical to include heterogeneous chemistry in/on sea-spray. Partitioning of total particle-NO{sub 3}{sup -} between sea-spray and NH{sub 4}NO{sub 3} is highly sensitive …
Date: April 19, 2006
Creator: Pryor, S C; Barthelmie, R J; Schoof, J T; Binkowski, F S; Monache, L D & Stull, R B
Object Type: Article
System: The UNT Digital Library
First Wall and Operational Diagnostics (open access)

First Wall and Operational Diagnostics

In this chapter we review numerous diagnostics capable of measurements at or near the first wall, many of which contribute information useful for safe operation of a tokamak. There are sections discussing infrared cameras, visible and VUV cameras, pressure gauges and RGAs, Langmuir probes, thermocouples, and erosion and deposition measurements by insertable probes and quartz microbalance. Also discussed are dust measurements by electrostatic detectors, laser scattering, visible and IR cameras, and manual collection of samples after machine opening. In each case the diagnostic is discussed with a view toward application to a burning plasma machine such as ITER.
Date: June 19, 2006
Creator: Lasnier, C.; Allen, S.; Boedo, J.; Groth, M.; Brooks, N.; McLean, A. et al.
Object Type: Article
System: The UNT Digital Library
History and Evolution of Control Banding: A Review (open access)

History and Evolution of Control Banding: A Review

Control Banding (CB) strategies offer simplified solutions for controlling worker exposures to constituents often encountered in the workplace. The original CB model was developed within the pharmaceutical industry; however, the modern movement involves models developed for non-experts to input hazard and exposure potential information for bulk chemical processes, receiving control advice as a result. The CB approach utilizes these models for the dissemination of qualitative and semi-quantitative risk assessment tools being developed to complement the traditional industrial hygiene model of air sampling and analysis. It is being applied and tested in small and medium size enterprises (SMEs) within developed countries and industrially developing countries; however, large enterprises (LEs) have also incorporated these strategies within chemical safety programs. Existing research of the components of the most available CB model, the Control of Substances Hazardous to Health (COSHH) Essentials, has shown that exposure bands do not always provide adequate margins of safety, that there is a high rate of under-control errors, that it works better with dusts than with vapors, that there is an inherent inaccuracy in estimating variability, and that when taken together the outcomes of this model may lead to potentially inappropriate workplace confidence in chemical exposure reduction in some …
Date: July 19, 2006
Creator: Zalk, D. & Nelson, D.
Object Type: Article
System: The UNT Digital Library
Formal Specification of the OpenMP Memory Model (open access)

Formal Specification of the OpenMP Memory Model

OpenMP [2] is an important API for shared memory programming, combining shared memory's potential for performance with a simple programming interface. Unfortunately, OpenMP lacks a critical tool for demonstrating whether programs are correct: a formal memory model. Instead, the current official definition of the OpenMP memory model (the OpenMP 2.5 specification [2]) is in terms of informal prose. As a result, it is impossible to verify OpenMP applications formally since the prose does not provide a formal consistency model that precisely describes how reads and writes on different threads interact. We expand on our previous work that focused on the formal verification of OpenMP programs through a formal memory model [?]. As in that work, our formalization, which is derived from the existing prose model [2], provides a two-step process to verify whether an observed OpenMP execution is conformant. This paper extends the model to cover the entire specification. In addition to this formalization, our contributions include a discussion of ambiguities in the current prose-based memory model description. Although our formal model may not capture the current informal memory model perfectly, in part due to these ambiguities, our model reflects our understanding of the informal model's intent. We conclude with …
Date: December 19, 2006
Creator: Bronevetsky, G & de Supinski, B
Object Type: Article
System: The UNT Digital Library
Dynamic Data-Driven Event Reconstruction for Atmospheric Releases (open access)

Dynamic Data-Driven Event Reconstruction for Atmospheric Releases

The role of an event reconstruction capability in a case of an atmospheric release is to characterize the source by answering the critical questions--How much material was released? When? Where? and What are the potential consequences? Accurate estimation of the source term is essential to accurately predict plume dispersion, effectively manage the emergency response, and mitigate consequences in a case of an atmospheric release of hazardous material. We are developing a capability that seamlessly integrates observational data streams with predictive models in order to provide probabilistic estimates of unknown source term parameters consistent with both data and model predictions. Our approach utilizes Bayesian inference with stochastic sampling using Markov Chain and Sequential Monte Carlo methodology. The inverse dispersion problem is reformulated into a solution based on efficient sampling of an ensemble of predictive simulations, guided by statistical comparisons with data. We are developing a flexible and adaptable data-driven event-reconstruction capability for atmospheric releases that provides (1) quantitative probabilistic estimates of the principal source-term parameters (e.g., the time-varying release rate and location); (2) predictions of increasing fidelity as an event progresses and additional data become available; and (3) analysis tools for sensor network design and uncertainty studies. Our computational framework incorporates …
Date: April 19, 2006
Creator: Mirin, A. A. & Kosovic, B.
Object Type: Report
System: The UNT Digital Library
Oak Ridge Reservation Physical Characteristics and Natural Resources (open access)

Oak Ridge Reservation Physical Characteristics and Natural Resources

The topography, geology, hydrology, vegetation, and wildlife of the Oak Ridge Reservation (ORR) provide a complex and intricate array of resources that directly impact land stewardship and use decisions (Fig. 1). The purpose of this document is to consolidate general information regarding the natural resources and physical characteristics of the ORR. The ORR, encompassing 33,114 acres (13,401 ha) of federally owned land and three Department of Energy (DOE) installations, is located in Roane and Anderson Counties in east Tennessee, mostly within the corporate limits of the city of Oak Ridge and southwest of the population center of Oak Ridge. The ORR is bordered on the north and east by the population center of the city of Oak Ridge and on the south and west by the Clinch River/Melton Hill Lake impoundment. All areas of the ORR are relatively pristine when compared with the surrounding region, especially in the Valley and Ridge Physiographic Province (Fig. 2). From the air, the ORR is clearly a large and nearly continuous island of forest within a landscape that is fragmented by urban development and agriculture. Satellite imagery from 2006 was used to develop a land-use/land-cover cover map of the ORR and surrounding lands (Fig. …
Date: September 19, 2006
Creator: Parr, P. D. & Hughes, J. F.
Object Type: Report
System: The UNT Digital Library
Integrated Global Nuclear Materials Management Preliminary Concepts (open access)

Integrated Global Nuclear Materials Management Preliminary Concepts

The world is at a turning point, moving away from the Cold War nuclear legacy towards a future global nuclear enterprise; and this presents a transformational challenge for nuclear materials management. Achieving safety and security during this transition is complicated by the diversified spectrum of threat 'players' that has greatly impacted nonproliferation, counterterrorism, and homeland security requirements. Rogue states and non-state actors no longer need self-contained national nuclear expertise, materials, and equipment due to availability from various sources in the nuclear market, thereby reducing the time, effort and cost for acquiring a nuclear weapon (i.e., manifestations of latency). The terrorist threat has changed the nature of military and national security requirements to protect these materials. An Integrated Global Nuclear Materials Management (IGNMM) approach would address the existing legacy nuclear materials and the evolution towards a nuclear energy future, while strengthening a regime to prevent nuclear weapon proliferation. In this paper, some preliminary concepts and studies of IGNMM will be presented. A systematic analysis of nuclear materials, activities, and controls can lead to a tractable, integrated global nuclear materials management architecture that can help remediate the past and manage the future. A systems approach is best suited to achieve multi-dimensional and …
Date: June 19, 2006
Creator: Jones, E & Dreicer, M
Object Type: Article
System: The UNT Digital Library
Chapter 9: Electronics (open access)

Chapter 9: Electronics

Sophisticated front-end electronics are a key part of practically all modern radiation detector systems. This chapter introduces the basic principles and their implementation. Topics include signal acquisition, electronic noise, pulse shaping (analog and digital), and data readout techniques.
Date: December 19, 2006
Creator: Grupen, Claus & Shwartz, Boris A.
Object Type: Book
System: The UNT Digital Library
Managing Commercial Tree Species for Timber Production and Carbon Sequestration: Management Guidelines and Financial Returns (open access)

Managing Commercial Tree Species for Timber Production and Carbon Sequestration: Management Guidelines and Financial Returns

A carbon credit market is developing in the United States. Information is needed by buyers and sellers of carbon credits so that the market functions equitably and efficiently. Analyses have been conducted to determine the optimal forest management regime to employ for each of the major commercial tree species so that profitability of timber production only or the combination of timber production and carbon sequestration is maximized. Because the potential of a forest ecosystem to sequester carbon depends on the tree species, site quality and management regimes utilized, analyses have determined how to optimize carbon sequestration by determining how to optimally manage each species, given a range of site qualities, discount rates, prices of carbon credits and other economic variables. The effects of a carbon credit market on the method and profitability of forest management, the cost of sequestering carbon, the amount of carbon that can be sequestered, and the amount of timber products produced has been determined.
Date: September 19, 2006
Creator: Kronrad, Gary D.
Object Type: Report
System: The UNT Digital Library
Orbital HP-Clouds for Solving Schrödinger Equation in Quantum Mechanics (open access)

Orbital HP-Clouds for Solving Schrödinger Equation in Quantum Mechanics

Solving Schroedinger equation in quantum mechanics presents a challenging task in numerical methods due to the high order behavior and high dimension characteristics in the wave functions, in addition to the highly coupled nature between wave functions. This work introduces orbital and polynomial enrichment functions to the partition of unity for solution of Schroedinger equation under the framework of HP-Clouds. An intrinsic enrichment of orbital function and extrinsic enrichment of monomial functions are proposed. Due to the employment of higher order basis functions, a higher order stabilized conforming nodal integration is developed. The proposed methods are implemented using the density functional theory for solution of Schroedinger equation. Analysis of several single and multi-electron/nucleus structures demonstrates the effectiveness of the proposed method.
Date: October 19, 2006
Creator: Chen, J. S.; Hu, W. & Puso, M. A.
Object Type: Article
System: The UNT Digital Library
Laser Plasma instability reduction by coherence disruption (open access)

Laser Plasma instability reduction by coherence disruption

The saturation levels of stimulated scattering of intense laser light in plasmas and techniques to reduce these levels are of great interest. A simple model is used to highlight the dependence of the reflectivity on the coherence length for the density fluctuations producing the scattering. Sometimes the coherence lengths can be determined nonlinearly. For NIF hohlraum plasmas, a reduction in the coherence lengths might be engineered in several ways. Finally, electron trapping in ion sound waves is briefly examined as a potentially important effect for the saturation of stimulated Brillouin scattering.
Date: April 19, 2006
Creator: Kruer, W. l.; Amendt, P. A.; Meezan, N. & Suter, L. J.
Object Type: Report
System: The UNT Digital Library
Interactive Supercomputing’s Star-P Platform (open access)

Interactive Supercomputing’s Star-P Platform

The thesis of this extended abstract is simple. High productivity comes from high level infrastructures. To measure this, we introduce a methodology that goes beyond the tradition of timing software in serial and tuned parallel modes. We perform a classroom productivity study involving 29 students who have written a homework exercise in a low level language (MPI message passing) and a high level language (Star-P with MATLAB client). Our conclusions indicate what perhaps should be of little surprise: (1) the high level language is always far easier on the students than the low level language. (2) The early versions of the high level language perform inadequately compared to the tuned low level language, but later versions substantially catch up. Asymptotically, the analogy must hold that message passing is to high level language parallel programming as assembler is to high level environments such as MATLAB, Mathematica, Maple, or even Python. We follow the Kepner method that correctly realizes that traditional speedup numbers without some discussion of the human cost of reaching these numbers can fail to reflect the true human productivity cost of high performance computing. Traditional data compares low level message passing with serial computation. With the benefit of a …
Date: September 19, 2006
Creator: Edelman, Alan; Husbands, Parry & Leibman, Steve
Object Type: Article
System: The UNT Digital Library