Complete Genome Sequence of Yersinia pestis Strains Antiqua andNepal516: Evidence of Gene Reduction in an Emerging Pathogen (open access)

Complete Genome Sequence of Yersinia pestis Strains Antiqua andNepal516: Evidence of Gene Reduction in an Emerging Pathogen

Yersinia pestis, the causative agent of bubonic andpneumonicplague, has undergone detailed study at the molecular level. Tofurther investigate the genomic diversity among this group and to helpcharacterize lineages of the plague organism that have no sequencedmembers, we present here the genomes of two isolates of the "classical"Antiqua biovar, strains Antiqua and Nepal516. The genomes of Antiqua andNepal516 are 4.7 Mb and 4.5 Mb and encode 4,138 and 3,956 open readingframes respectively. Though both strains belong to one of the threeclassical biovars, they represent separate lineages defined by recentphylogenetic studies. We compare all five currently sequenced Y. pestisgenomes and the corresponding features in Y. pseudotuberculosis. Thereare strain-specific rearrangements, insertions, deletions, singlenucleotide polymorphisms and a unique distribution of insertionsequences. We found 453 single nucleotide polymorphisms in protein codingregions, which were used to assess evolutionary relationships of these Y.pestis strains. Gene reduction analysis revealed that the gene deletionprocesses are under selective pressure and many of the inactivations areprobably related to the organism s interaction with its host environment.The results presented here clearly demonstrate the differences betweenthe two Antiqua lineages and support the notion that grouping Y. pestisstrains based strictly on the classical definition of biovars (predicatedupon two biochemical assays) does not accurately reflect …
Date: January 16, 2006
Creator: Chain, Patrick S.G.; Hu, Ping; Malfatti, Stephanie A.; Radnedge,Lyndsay; Larimer, Frank; Vergez, Lisa M. et al.
Object Type: Article
System: The UNT Digital Library
Long-Term Phase Instability in Water-Quenched U-6Nb (open access)

Long-Term Phase Instability in Water-Quenched U-6Nb

A combinative approach of microhardness testing, tensile testing, and TEM microstructural analysis was employed to study the microstructure and mechanical instability of a water-quenched U-6wt.% Nb (WQ-U6Nb) alloy subjected to different aging schedules including artificial aging at 200 C, 15-year natural aging at ambient temperatures, and 15-year natural aging followed by accelerative aging at 200 C. The changes in mechanical property during and after the aging processes were examined using microhardness and tensile-testing methods. During the early stages of artificial aging at 200 C, the microhardness of WQ-U6Nb alloy increased, i.e., age hardening, as a result of the development of nanoscale modulation caused by spinodal decomposition. Coarsening of the modulated structure occurred after a prolonged aging at 200 C for 16 hours, and it led to a decrease of microhardness, i.e., age softening. Phase instability was also found to occur in WQ-U6Nb alloy that was subjected to a 15-year natural aging at ambient temperatures. The formation of partially ordered domains resulting from a spinodal modulation with an atomic-scale wavelength rendered the appearance of swirl-shape antiphase domain boundaries (APBs) observed in TEM images. Although it did not cause a significant change in microhardness, 15-year natural aging has dramatically affected the aging …
Date: January 16, 2006
Creator: Hsiung, L L & Zhou, J
Object Type: Article
System: The UNT Digital Library
Signal Transduction Pathways that Regulate CAB Gene Expression (open access)

Signal Transduction Pathways that Regulate CAB Gene Expression

The process of chloroplast differentiation, involves the coordinate regulation of many nuclear and chloroplast genes. The cues for the initiation of this developmental program are both extrinsic (e.g., light) and intrinsic (cell-type and plastid signals). During this project period, we utilized a molecular genetic approach to select for Arabidopsis mutants that did not respond properly to environmental light conditions, as well as mutants that were unable to perceive plastid damage. These latter mutants, called gun mutants, define two retrograde signaling pathways that regulate nuclear gene expression in response to chloroplasts. A major finding was to identify a signal from chloroplasts that regulates nuclear gene transcription. This signal is the build-up of Mg-Protoporphyrin IX, a key intermediate of the chlorophyll biosynthetic pathway. The signaling pathways downstream of this signal are currently being studied. Completion of this project has provided an increased understanding of the input signals and retrograde signaling pathways that control nuclear gene expression in response to the functional state of chloroplasts. These studies should ultimately influence our abilities to manipulate plant growth and development, and will aid in the understanding of the developmental control of photosynthesis.
Date: January 16, 2006
Creator: Chory, Joanne
Object Type: Report
System: The UNT Digital Library
Arts and Humanities: Background on Funding (open access)

Arts and Humanities: Background on Funding

This report
Date: February 16, 2006
Creator: Boren, Susan
Object Type: Report
System: The UNT Digital Library
The Back End of the Fuel Cycle Moves Front and Center (open access)

The Back End of the Fuel Cycle Moves Front and Center

For many years, the commercial nuclear business has remained relatively stable in many ways. The introduction of new plants, the spread to new countries, and the development of key elements of the fuel cycle such as enrichment, reprocessing and waste disposal have been quite modest. That is unlikely to be the case in the coming years. A number of events and trends are becoming increasingly apparent and are cause for both opportunity and caution: (1) New nuclear power plant orders are likely to grow and spread, particularly in the developing world, e.g. China and India. (2) The growing recognition that the developing world will be a major competitor for limited energy resources is raising awareness in the developed world regarding concerns for future energy security. (3) Clearer evidence of the effects of greenhouse gas emissions on global warming, largely from the burning of fossil fuels, is creating more attention on the environmental benefits of nuclear power. (4) The last decade has shown unequivocal evidence of countries lying, cheating on their NPT obligation, and covertly carrying out nuclear weapons-related activities. Some have suggested their presumed need for a domestic nuclear fuel cycle as a rationale to pursue enrichment and/or reprocessing capabilities, …
Date: February 16, 2006
Creator: Isaacs, T & Choi, J
Object Type: Article
System: The UNT Digital Library
Cost of Power Interruptions to Electricity Consumers in the United States (U.S.) (open access)

Cost of Power Interruptions to Electricity Consumers in the United States (U.S.)

The massive electric power blackout in the northeastern U.S.and Canada on August 14-15, 2003 catalyzed discussions about modernizingthe U.S. electricity grid. Industry sources suggested that investments of$50 to $100 billion would be needed. This work seeks to better understandan important piece of information that has been missing from thesediscussions: What do power interruptions and fluctuations in powerquality (power-quality events) cost electricity consumers? We developed abottom-up approach for assessing the cost to U.S. electricity consumersof power interruptions and power-quality events (referred to collectivelyas "reliability events"). The approach can be used to help assess thepotential benefits of investments in improving the reliability of thegrid. We developed a new estimate based on publicly availableinformation, and assessed how uncertainties in these data affect thisestimate using sensitivity analysis.
Date: February 16, 2006
Creator: Hamachi LaCommare, Kristina & Eto, Joseph H.
Object Type: Article
System: The UNT Digital Library
Cuba: U.S. Restrictions on Travel and Remittances (open access)

Cuba: U.S. Restrictions on Travel and Remittances

Restrictions on travel to Cuba have been a key and often contentious component in U.S. efforts to isolate the communist government of Fidel Castro for much of the past 40 years. Under the Bush Administration, enforcement of U.S. restrictions on Cuba travel has increased, and restrictions on travel and on private remittances to Cuba have been tightened. Several legislative initiatives have been introduced in the 109th Congress that would ease restrictions on travel and remittances to Cuba. These bills would, among other things, lift overall restrictions on travel to Cuba, lift the overall embargo, and ease restrictions on exporting agricultural commodities to Cuba.
Date: February 16, 2006
Creator: Sullivan, Mark P.
Object Type: Report
System: The UNT Digital Library
Disaster Preparedness: Preliminary Observations on the Evacuation of Hospitals and Nursing Homes Due to Hurricanes (open access)

Disaster Preparedness: Preliminary Observations on the Evacuation of Hospitals and Nursing Homes Due to Hurricanes

Correspondence issued by the Government Accountability Office with an abstract that begins "During disasters, administrators of health care facilities are faced with decisions about how to operate and care for patients, including when and how to evacuate patients if the facility becomes unable to support adequate care, treatment, or services. Hospitals and nursing homes are required to have plans in place that describe how they will operate during emergencies. Hurricanes Katrina and Rita were incidents of national significance that highlighted the challenges involved in evacuating vulnerable populations, including those in hospitals and nursing homes. Federal officials used the National Disaster Medical System (NDMS) to help evacuate patients due to Hurricane Katrina--the first time the system has been used to evacuate such a large number of patients. Formed in 1984, NDMS is a partnership among the Department of Defense (DOD), the Department of Health and Human Services (HHS), the Department of Homeland Security (DHS), and the Department of Veterans Affairs (VA). We have begun work to assess the evacuation of hospital and nursing home patients due to disasters. We are performing this work under the Comptroller General's authority to conduct evaluations on his own initiative. To conduct our review, we obtained …
Date: February 16, 2006
Creator: United States. Government Accountability Office.
Object Type: Text
System: The UNT Digital Library
The FY2007 Budget Request for the U.S. Department of Agriculture (USDA) (open access)

The FY2007 Budget Request for the U.S. Department of Agriculture (USDA)

This report discusses the FY2007 budget request for the U.S. Department of Agriculture (USDA) includes $96.4 billion in budget authority.
Date: February 16, 2006
Creator: Monke, Jim
Object Type: Report
System: The UNT Digital Library
The FY2007 Budget Request for the U.S. Department of Agriculture (USDA) (open access)

The FY2007 Budget Request for the U.S. Department of Agriculture (USDA)

This report discusses the FY2007 budget request for the U.S. Department of Agriculture (USDA) includes $96.4 billion in budget authority.
Date: February 16, 2006
Creator: Monke, Jim
Object Type: Report
System: The UNT Digital Library
Historic Preservation: Federal Laws and Regulations Related to Hurricane Recovery and Reconstruction (open access)

Historic Preservation: Federal Laws and Regulations Related to Hurricane Recovery and Reconstruction

This report includes federal laws and regulations related to Hurricane Recovery and Reconstruction of Historic Preservation.
Date: February 16, 2006
Creator: Weimer, Douglas Reid
Object Type: Report
System: The UNT Digital Library
Homeland Security: Coast Guard Operations — Background and Issues for Congress (open access)

Homeland Security: Coast Guard Operations — Background and Issues for Congress

None
Date: February 16, 2006
Creator: O'Rourke, Ronald
Object Type: Report
System: The UNT Digital Library
Homeland Security: Protecting Airliners from Terrorist Missiles (open access)

Homeland Security: Protecting Airliners from Terrorist Missiles

Recent events have focused attention on the threat that terrorists with shoulder fired surface-to-air missiles (SAMs), referred to as Man-Portable Air Defense Systems (MANPADS), pose to commercial airliners. This report discusses SAMs and examines options for mitigating missile threats.
Date: February 16, 2006
Creator: Bolkcom, Christopher & Elias, Bartholomew
Object Type: Report
System: The UNT Digital Library
Individuals with Disabilities Education Act (IDEA): Current Funding Trends (open access)

Individuals with Disabilities Education Act (IDEA): Current Funding Trends

This report provides an overview of the funding trends on the Individuals with Disabilities Education Act (IDEA).
Date: February 16, 2006
Creator: Apling, Richard N.
Object Type: Report
System: The UNT Digital Library
Mexico-United States Dialogue on Migration and Border Issues, 2001-2006 (open access)

Mexico-United States Dialogue on Migration and Border Issues, 2001-2006

This report, which will be updated periodically, focuses on the interactions between Mexico and the United States on migration and border issues during the administrations of President George W. Bush and President Vicente Fox of Mexico. These interactions are increasingly tense in 2006 due to violence in the border region and debate over U.S. immigration reform. The discussions and agreements fall into four areas: (1) the bilateral migration talks, (2) the Partnership for Prosperity, (3) the Border Partnership Agreement, and (4) the trilateral "Security and Prosperity Partnership (SPP) of North America."
Date: February 16, 2006
Creator: Cook, Colleen W.
Object Type: Report
System: The UNT Digital Library
Mexico-United States Dialogue on Migration and Border Issues, 2001-2006 (open access)

Mexico-United States Dialogue on Migration and Border Issues, 2001-2006

This report focuses on the interactions between Mexico and the United States on migration and border issues during the administrations of President George W. Bush and President Vicente Fox of Mexico. The discussions and agreements fall into four areas: (1) the bilateral migration talks, (2) the Partnership for Prosperity, (3) the Border Partnership Agreement, and (4) the trilateral “Security and Prosperity Partnership (SPP) of North America.
Date: February 16, 2006
Creator: Cook, Colleen W.
Object Type: Report
System: The UNT Digital Library
Mexico-United States Dialogue on Migration and Border Issues, 2001-2006 (open access)

Mexico-United States Dialogue on Migration and Border Issues, 2001-2006

This report focuses on the interactions between Mexico and the United States on migration and border issues during the administrations of President George W. Bush and President Vicente Fox of Mexico. The discussions and agreements fall into four areas: (1) the bilateral migration talks, (2) the Partnership for Prosperity, (3) the Border Partnership Agreement, and (4) the trilateral “Security and Prosperity Partnership (SPP) of North America.
Date: February 16, 2006
Creator: Cook, Colleen W.
Object Type: Report
System: The UNT Digital Library
Military Retirement: Major Legislative Issues (open access)

Military Retirement: Major Legislative Issues

Report on the military retirement system, including benefits, recent developments, key elements and issues, political climate, and more.
Date: February 16, 2006
Creator: Henning, Charles A.
Object Type: Report
System: The UNT Digital Library
Morocco-U.S. Free Trade Agreement (open access)

Morocco-U.S. Free Trade Agreement

This report discusses the free trade agreement (FTA) between United States and Morocco. The United States and Morocco reached agreement on March 2, 2004 to create a free trade agreement.
Date: February 16, 2006
Creator: Ahearn, Raymond J.
Object Type: Report
System: The UNT Digital Library
National Aeronautics and Space Administration: Overview, FY2007 Budget in Brief, and Key Issues for Congress (open access)

National Aeronautics and Space Administration: Overview, FY2007 Budget in Brief, and Key Issues for Congress

This report provides an overview of the National Aeronautics and Space Administration (NASA) and discuses NASA budget and its new Vision for Space Exploration, especially whether it is maintaining a balanced portfolio of programs that include science and aeronautics.
Date: February 16, 2006
Creator: Smith, Marcia S. & Morgan, Daniel
Object Type: Report
System: The UNT Digital Library
Nuclear Weapons: Comprehensive Test Ban Treaty (open access)

Nuclear Weapons: Comprehensive Test Ban Treaty

None
Date: February 16, 2006
Creator: Medalia, Jonathan
Object Type: Report
System: The UNT Digital Library
The Peace Corps: Current Issues (open access)

The Peace Corps: Current Issues

None
Date: February 16, 2006
Creator: unknown
Object Type: Report
System: The UNT Digital Library
POWs and MIAs: Status and Accounting Issues (open access)

POWs and MIAs: Status and Accounting Issues

Report on prisoners of war and those missing in action, including issues in identifying them, historical context, Congressional interest, relevant terms, and more.
Date: February 16, 2006
Creator: Henning, Charles A.
Object Type: Report
System: The UNT Digital Library
Prevailing Wage Requirements and the Emergency Suspension of the Davis-Bacon Act (open access)

Prevailing Wage Requirements and the Emergency Suspension of the Davis-Bacon Act

None
Date: February 16, 2006
Creator: unknown
Object Type: Report
System: The UNT Digital Library