Genetic algorithms for DNA sequence assembly (open access)

Genetic algorithms for DNA sequence assembly

This paper describes a genetic algorithm application to the DNA fragment assembly problems. The genetic algorithm uses a random key representation for representing the orderings of fragments. Two different fitness functions, both based on pairwise overlap strengths between fragments, were tested. The paper concludes that the genetic algorithm is a promising method for fragment assembly problems, achieving usable solutions quickly, but that the current fitness functions are flawed and that other representations might be more appropriate.
Date: April 13, 1993
Creator: Parsons, R.; Burks, C. (Los Alamos National Lab., NM (United States)) & Forrest, S. (New Mexico Univ., Albuquerque, NM (United States). Dept. of Computer Science)
Object Type: Article
System: The UNT Digital Library
Texas Register, Volume 18, Number 29, Pages 2439-2489, April 13, 1993 (open access)

Texas Register, Volume 18, Number 29, Pages 2439-2489, April 13, 1993

A weekly publication, the Texas Register serves as the journal of state agency rulemaking for Texas. Information published in the Texas Register includes proposed, adopted, withdrawn and emergency rule actions, notices of state agency review of agency rules, governor's appointments, attorney general opinions, and miscellaneous documents such as requests for proposals. After adoption, these rulemaking actions are codified into the Texas Administrative Code.
Date: April 13, 1993
Creator: Texas. Secretary of State.
Object Type: Journal/Magazine/Newsletter
System: The Portal to Texas History
Texas Register, Volume 18, Number 61, Pages 5373-5423, August 13, 1993 (open access)

Texas Register, Volume 18, Number 61, Pages 5373-5423, August 13, 1993

A weekly publication, the Texas Register serves as the journal of state agency rulemaking for Texas. Information published in the Texas Register includes proposed, adopted, withdrawn and emergency rule actions, notices of state agency review of agency rules, governor's appointments, attorney general opinions, and miscellaneous documents such as requests for proposals. After adoption, these rulemaking actions are codified into the Texas Administrative Code.
Date: August 13, 1993
Creator: Texas. Secretary of State.
Object Type: Journal/Magazine/Newsletter
System: The Portal to Texas History
Texas Attorney General Opinion: DM-215 (open access)

Texas Attorney General Opinion: DM-215

Document issued by the Office of the Attorney General of Texas in Austin, Texas, providing an interpretation of Texas law. It provides the opinion of the Texas Attorney General, Dan Morales, regarding a legal question submitted for clarification: Interpretation of article 21.24-1, section 4(c) of the Insurance Code relating to assignment of health insurance benefits and waiver of deductibles or copayments (RQ-353)
Date: April 13, 1993
Creator: Texas. Attorney-General's Office.
Object Type: Text
System: The Portal to Texas History
Texas Attorney General Opinion: DM-222 (open access)

Texas Attorney General Opinion: DM-222

Document issued by the Office of the Attorney General of Texas in Austin, Texas, providing an interpretation of Texas law. It provides the opinion of the Texas Attorney General, Dan Morales, regarding a legal question submitted for clarification; Whether a child support oobligee may modify a child support order by filing with a disctrict clerk a limited power of attorney authorizing a corporation to recieve child support payments paid through the district clerk's office along with a request that the clerk send the child support payments to the coorporation (RQ-478)
Date: May 13, 1993
Creator: Texas. Attorney-General's Office.
Object Type: Text
System: The Portal to Texas History
Exploring phase space concepts in the forecasting of time series with artificial neural networks (open access)

Exploring phase space concepts in the forecasting of time series with artificial neural networks

The authors study the performance of feedforward artificial neural networks in forecasting future values of several different time series. They explore both short- and long-term prediction of several periodic time series. They find that a significant source of error in long-term prediction of time series is introduced by a phase shift between the network output and the time series. They explore the origin of this phase shift and suggest strategies for minimizing its effect. They find that the phase diagrams of the time series and the neural network forecast contain useful diagnostic information.
Date: September 13, 1993
Creator: Rogers, R. D. & Vemuri, V.
Object Type: Article
System: The UNT Digital Library
Final results from the SDC dopant search for new green wavelength shifting (WLS) fibers. Volume 2 (open access)

Final results from the SDC dopant search for new green wavelength shifting (WLS) fibers. Volume 2

This report contains fluorescent spectral graphs of dopant materials for green wavelength shifting fibers.
Date: December 13, 1993
Creator: Pla-Dalmau, A.; Foster, G. W. & Zhang, G.
Object Type: Report
System: The UNT Digital Library
Groundwater monitoring plan for the proposed state-approved land disposal structure (open access)

Groundwater monitoring plan for the proposed state-approved land disposal structure

This document outlines a detection-level groundwater monitoring program for the state-approved land disposal structure (SALDS). The SALDS is an infiltration basin proposed for disposal of treated effluent from the 200 Areas of the Hanford Site. The purpose of this plan is to present a groundwater monitoring program that is capable of determining the impact of effluent disposal at the SALDS on the quality of groundwater in the uppermost aquifer. This groundwater monitoring plan presents an overview of the SALDS, the geology and hydrology of the area, the background and indicator evaluation (detection) groundwater monitoring program, and an outline of a groundwater quality assessment (compliance) program. This plan does not provide a plan for institutional controls to track tritium beyond the SALDS.
Date: October 13, 1993
Creator: Reidel, S. P.
Object Type: Report
System: The UNT Digital Library
Demonstration of no feasibility of a Crystalline Beam in a Betatron Magnet (open access)

Demonstration of no feasibility of a Crystalline Beam in a Betatron Magnet

This technical report investigates the feasibility of a Crystalline Beam in a weak-focussing storage ring like a Betatron. At the same time the curvature effect due to the bending magnet is also investigated. As a special case, the example of a circular one-dimensional string of electrically charged particles is examined. It is found that the motion of the particles is unstable due to the dependence of the precession movement with respect to each other on their radial displacement. That is a form of negative-mass instability which can be avoided with an alternating-focussing structure corresponding to a transition energy above the energy of the particles. The calculation of the particle-particle interaction as well as of the forces due to the external magnetic field is done directly in the laboratory frame. The retarded potential expressions are used at this purpose.
Date: September 13, 1993
Creator: Ruggiero, Alessandro G.
Object Type: Report
System: The UNT Digital Library
The development of coal-based technologies for Department of Defense facilities. Semiannual technical progress report, September 28, 1992--March 27, 1993 (open access)

The development of coal-based technologies for Department of Defense facilities. Semiannual technical progress report, September 28, 1992--March 27, 1993

The US Department of Defense (DOD), through an Interagency Agreement with the US Department of Energy (DOE), has initiated a three-phase program with the Consortium for Coal-Water Slurry Fuel Technology, with the aim of decreasing DOD`s reliance on imported oil by increasing its use of coal. The program is being conducted as a cooperative agreement between the Consortium and DOE and the first phase of the program is underway. Phase I activities are focused on developing clean, coal-based combustion technologies for the utilization of both micronized coal-water mixtures (MCWMs) and dry, micronized coal (MC) in fuel oil-designed industrial boilers. Phase II research and development activities will continue to focus on industrial boiler retrofit technologies by addressing emissions control and pre-combustion (i.e., slagging combustion and/or gasification) strategies for the utilization of high ash and high sulfur coals. Phase III activities will examine coal-based fuel combustion systems that cofire wastes. Each phase includes an engineering cost analysis and technology assessment. The activities and status of Phase I are described below. The objective in Phase I is to deliver fully engineered retrofit options for a fuel oil- designed watertube boiler located on a DOD installation to fire either MCWM or MC. This will …
Date: May 13, 1993
Creator: Miller, B. G.; Scaroni, A. W. & Hogg, R.
Object Type: Report
System: The UNT Digital Library
Polar Solvation and Electron Transfer. Annual Progress Report, July 1, 1992--June 30, 1993 (open access)

Polar Solvation and Electron Transfer. Annual Progress Report, July 1, 1992--June 30, 1993

The report is divided into the following sections: completion of previous studies on solvation dynamics, dipole lattice studies, inertial components of solvation response, simple models of solvation dynamics, rotational dynamics and dielectric friction, intramolecular electron transfer reactions, and intermolecular donor-acceptor complexes.
Date: April 13, 1993
Creator: unknown
Object Type: Report
System: The UNT Digital Library
Fiber optic chemical sensors for characterizing the carbon cycle in ocean margin regions. Annual progress report (open access)

Fiber optic chemical sensors for characterizing the carbon cycle in ocean margin regions. Annual progress report

The overall objective of our DOE-Ocean Margins Programs grant is to develop a pCO{sub 2} sensor for long-term monitoring of pCO{sub 2} in the ocean margins and to establish a proving ground for the development of other chemical sensors for characterizing the carbon cycle in these regions. We have succeeded in keeping with the approximate timeline outlined in the original proposal, which, for year 1 included the following objectives: Continue sensor optimization, test response characteristics (reagent and sample flow rates, temperature), introduce position sensitive photodiode and photodiode array spectrophotometers and evaluate, develop reliable and reproducible fabrication techniques, develop sensor based on preliminary studies optimized for field measurements (minimize size and power requirements), test long-term stability of the sensor in the laboratory, determine susceptibility to fouling and corrosion. This work is summarized below along with a brief review of the sensor`s operating principle.
Date: April 13, 1993
Creator: DeGrandpre, M. D. & Sayles, F. L.
Object Type: Report
System: The UNT Digital Library
Study of Pu consumption in Advanced Light Water Reactors. Evaluation of GE Advanced Boiling Water Reactor plants (open access)

Study of Pu consumption in Advanced Light Water Reactors. Evaluation of GE Advanced Boiling Water Reactor plants

Timely disposal of the weapons plutonium is of paramount importance to permanently safeguarding this material. GE`s 1300 MWe Advanced Boiling Water Reactor (ABWR) has been designed to utilize fill] core loading of mixed uranium-plutonium oxide fuel. Because of its large core size, a single ABWR reactor is capable of disposing 100 metric tons of plutonium within 15 years of project inception in the spiking mode. The same amount of material could be disposed of in 25 years after the start of the project as spent fuel, again using a single reactor, while operating at 75 percent capacity factor. In either case, the design permits reuse of the stored spent fuel assemblies for electrical energy generation for the remaining life of the plant for another 40 years. Up to 40 percent of the initial plutonium can also be completely destroyed using ABWRS, without reprocessing, either by utilizing six ABWRs over 25 years or by expanding the disposition time to 60 years, the design life of the plants and using two ABWRS. More complete destruction would require the development and testing of a plutonium-base fuel with a non-fertile matrix for an ABWR or use of an Advanced Liquid Metal Reactor (ALMR). The …
Date: May 13, 1993
Creator: unknown
Object Type: Report
System: The UNT Digital Library
Burst mode FEL with the ETA-III induction linac (open access)

Burst mode FEL with the ETA-III induction linac

Pulses of 140 GHz microwaves have been produced at a 2 kHz rate using the ETA-III induction linac and IMP wiggler. The accelerator was run in bursts of up to 50 pulses at 6 MeV and greater than 2 kA peak current. A feedback timing control system was used to synchronize acceleration voltage pulses with the electron beam, resulting in sufficient reduction of the corkscrew and energy sweep for efficient FEL operation. Peak microwave power for short bursts was in the range 0.5--1.1 GW, which is comparable to the single-pulse peak power of 0.75--2 GW. FEL bursts of more than 25 pulses were obtained.
Date: May 13, 1993
Creator: Lasnier, C. J.; Allen, S. L. & Felker, B.
Object Type: Article
System: The UNT Digital Library
Elevation of surficial sediment/basalt contact in the Subsurface Disposal Area, Idaho National Engineering Laboratory (open access)

Elevation of surficial sediment/basalt contact in the Subsurface Disposal Area, Idaho National Engineering Laboratory

The elevation of the surficial sediment/basalt contact at the Subsurface Disposal Area (SDA), within the Radioactive Waste Management Complex (RWMC) is presented to provide a data base for future remedial actions at this site. About 1,300 elevation data from published and unpublished reports, maps, and surveyors notes were compiled to generate maps and cross-sections of the surficial sediment/basalt contact. In general, an east to west trending depression exists in the south central portion of the SDA with basalt closer to land surface on the northern and southern boundaries of the SDA. The lowest elevation of the surficial sediment/basalt contact is 4,979 ft and the greatest is land surface at 5,012 ft. The median elevation of the sediment/basalt interface is 4,994 ft. The median depth to basalt in the SDA is 16 ft if land surface elevation is assumed to be 5,010 ft. The depth from land surface to the sediment/basalt interface ranges from 24 ft in the southeast corner of the SDA to less than 3 ft at the north-central boundary of the SDA.
Date: May 13, 1993
Creator: Hubbell, J. M.
Object Type: Report
System: The UNT Digital Library
Texas Attorney General Opinion: LO93-028 (open access)

Texas Attorney General Opinion: LO93-028

Letter opinion issued by the Office of the Attorney General of Texas in Austin, Texas, providing an interpretation of Texas law. It provides the opinion of the Texas Attorney General, Dan Morales, regarding a legal question submitted for clarification: Authority to pronounce death and the requisites of a death certificate (ID# 17647)
Date: April 13, 1993
Creator: Texas. Attorney-General's Office.
Object Type: Text
System: The Portal to Texas History
Texas Attorney General Opinion: LO93-029 (open access)

Texas Attorney General Opinion: LO93-029

Letter opinion issued by the Office of the Attorney General of Texas in Austin, Texas, providing an interpretation of Texas law. It provides the opinion of the Texas Attorney General, Dan Morales, regarding a legal question submitted for clarification: Whether an individual who was unassociated with a racetrack license at the time the racetrack licensee at the time the racetrack was licensed or was operating may request reinstatement of the racetrack license under section 6.19 of the Texas Racing Act, V.T.C.S. article 179e (ID# 18204)
Date: April 13, 1993
Creator: Texas. Attorney-General's Office.
Object Type: Text
System: The Portal to Texas History
Texas Attorney General Opinion: LO93-030 (open access)

Texas Attorney General Opinion: LO93-030

Letter opinion issued by the Office of the Attorney General of Texas in Austin, Texas, providing an interpretation of Texas law. It provides the opinion of the Texas Attorney General, Dan Morales, regarding a legal question submitted for clarification: Whether a home-rule city may adopt a nepotism rule that is more restrictive than state law (RQ-359)
Date: April 13, 1993
Creator: Texas. Attorney-General's Office.
Object Type: Text
System: The Portal to Texas History
Refining a triangulation of a planar straight-line graph to eliminate large angles (open access)

Refining a triangulation of a planar straight-line graph to eliminate large angles

Triangulations without large angles have a number of applications in numerical analysis and computer graphics. In particular, the convergence of a finite element calculation depends on the largest angle of the triangulation. Also, the running time of a finite element calculation is dependent on the triangulation size, so having a triangulation with few Steiner points is also important. Bern, Dobkin and Eppstein pose as an open problem the existence of an algorithm to triangulate a planar straight-line graph (PSLG) without large angles using a polynomial number of Steiner points. We solve this problem by showing that any PSLG with {upsilon} vertices can be triangulated with no angle larger than 7{pi}/8 by adding O({upsilon}{sup 2}log {upsilon}) Steiner points in O({upsilon}{sup 2} log{sup 2} {upsilon}) time. We first triangulate the PSLG with an arbitrary constrained triangulation and then refine that triangulation by adding additional vertices and edges. Some PSLGs require {Omega}({upsilon}{sup 2}) Steiner points in any triangulation achieving any largest angle bound less than {pi}. Hence the number of Steiner points added by our algorithm is within a log {upsilon} factor of worst case optimal. We note that our refinement algorithm works on arbitrary triangulations: Given any triangulation, we show how to …
Date: May 13, 1993
Creator: Mitchell, S. A.
Object Type: Article
System: The UNT Digital Library
Fundamental mechanisms in flue gas conditioning. Quarterly report, April 1993--June 1993 (open access)

Fundamental mechanisms in flue gas conditioning. Quarterly report, April 1993--June 1993

The experiments we have been performing are primarily designed to define the extent to which water affects key properties of ashes, powders, and mixtures of sorbents and ashes. We have included selected data from prior quarterly reports in this report for the sake of completeness, and for comparisons with newly-acquired data. In several places in this report samples are referred to by their identification (SID) numbers. Table I provides a brief description of all the samples we have used in this project along with their SID numbers. As suggested by our literature review, our data indicate that water adsorption depends on particle morphology and surface chemistry. Our recent laboratory efforts were primarily directed toward the determination of the effects of adsorbed water on the tensile and cohesive strengths of powders, the development of apparatus for SO{sub 3} and organosiloxane conditioning, and the conditioning of powders and ashes with organosiloxane.
Date: July 13, 1993
Creator: Snyder, T. R.
Object Type: Report
System: The UNT Digital Library
A Tax on Consumed Income (open access)

A Tax on Consumed Income

None
Date: January 13, 1993
Creator: unknown
Object Type: Report
System: The UNT Digital Library
Stabilization of the external kink and other MHD issues. Summary report (open access)

Stabilization of the external kink and other MHD issues. Summary report

An MHD workshop entitled ``Stabilization of the External Kink and Other MHD Issues`` was held June 1993. This is a summary report of activities at that workshop, structured to respond to the three questions in the charge (letter from J. Willis). The experimental and theoretical status of these issues, and the R&D needs in each area, are addressed. We discuss the potential impact on the TPX and ITER programs of these issues. The workshop participants came from a broad and diverse range of institutions in the fusion program, including international participants. As a result, we believe the summary here reflects some consensus of the community on these very important program issues, and that the TPX and ITER programs will benefit from these discussions. The title of the workshop was chosen to indicate both our knowledge and our uncertainty of MHD phenomena limiting {beta} and causing disruptions in tokamaks. The purpose was to bring together theorists and experimentalist in order to assess our current understanding of the external kink instability at high {beta}, and to assess the potential for passive or active stabilization of the dominant modes. We also outlined the R&D needed for TPX and other future devices. Not only …
Date: August 13, 1993
Creator: Freidberg, J. P.; Goldston, R. J.; Jardin, S. C.; Neilson, G. H.; Rosenbluth, M. N.; Taylor, T. S. et al.
Object Type: Article
System: The UNT Digital Library
Genetic algorithms for DNA sequence assembly (open access)

Genetic algorithms for DNA sequence assembly

This paper describes a genetic algorithm application to the DNA fragment assembly problems. The genetic algorithm uses a random key representation for representing the orderings of fragments. Two different fitness functions, both based on pairwise overlap strengths between fragments, were tested. The paper concludes that the genetic algorithm is a promising method for fragment assembly problems, achieving usable solutions quickly, but that the current fitness functions are flawed and that other representations might be more appropriate.
Date: April 13, 1993
Creator: Parsons, R.; Burks, C. & Forrest, S.
Object Type: Article
System: The UNT Digital Library
Development of measurement capabilities for the thermophysical properties of energy-related fluids. Annual report, December 1, 1992--November 30, 1993 (open access)

Development of measurement capabilities for the thermophysical properties of energy-related fluids. Annual report, December 1, 1992--November 30, 1993

The measurement capabilities to be developed include new apparatus for transport properties, thermodynamic properties, phase equilibria, and dielectric properties. Specific capabilities are: Thermal conductivity apparatus, vibrating wire viscometer, dual-sinker densimeter, high-temperature vibrating tube densimeter, dynamic phase equilibria apparatus, apparatus for dilute solutions, total-enthalpy flow calorimeter. Benchmark measurements were made (no data given) on pure and mixed alternative refrigerants and their mixtures with lubricants, and other fluids.
Date: August 13, 1993
Creator: Kayser, R. F.
Object Type: Report
System: The UNT Digital Library