Early Brain Response to Low-Dose Radiation Exposure Involves Molecular Networks and Pathways Associated with Cognitive Functions, Advanced Aging and Alzheimer's Disease (open access)

Early Brain Response to Low-Dose Radiation Exposure Involves Molecular Networks and Pathways Associated with Cognitive Functions, Advanced Aging and Alzheimer's Disease

Understanding the cognitive and behavioral consequences of brain exposures to low-dose ionizing radiation has broad relevance for health risks from medical radiation diagnostic procedures, radiotherapy, environmental nuclear contamination, as well as earth orbit and space missions. Analyses of transcriptome profiles of murine brain tissue after whole-body radiation showed that low-dose exposures (10 cGy) induced genes not affected by high dose (2 Gy), and low-dose genes were associated with unique pathways and functions. The low-dose response had two major components: pathways that are consistently seen across tissues, and pathways that were brain tissue specific. Low-dose genes clustered into a saturated network (p < 10{sup -53}) containing mostly down-regulated genes involving ion channels, long-term potentiation and depression, vascular damage, etc. We identified 9 neural signaling pathways that showed a high degree of concordance in their transcriptional response in mouse brain tissue after low-dose radiation, in the aging human brain (unirradiated), and in brain tissue from patients with Alzheimer's disease. Mice exposed to high-dose radiation did not show these effects and associations. Our findings indicate that the molecular response of the mouse brain within a few hours after low-dose irradiation involves the down-regulation of neural pathways associated with cognitive dysfunctions that are also …
Date: June 6, 2008
Creator: Lowe, Xiu R; Bhattacharya, Sanchita; Marchetti, Francesco & Wyrobek, Andrew J.
Object Type: Article
System: The UNT Digital Library
Monte Carlo Methods in the Physical Sciences (open access)

Monte Carlo Methods in the Physical Sciences

I will review the role that Monte Carlo methods play in the physical sciences. They are very widely used for a number of reasons: they permit the rapid and faithful transformation of a natural or model stochastic process into a computer code. They are powerful numerical methods for treating the many-dimensional problems that derive from important physical systems. Finally, many of the methods naturally permit the use of modern parallel computers in efficient ways. In the presentation, I will emphasize four aspects of the computations: whether or not the computation derives from a natural or model stochastic process; whether the system under study is highly idealized or realistic; whether the Monte Carlo methodology is straightforward or mathematically sophisticated; and finally, the scientific role of the computation.
Date: June 6, 2007
Creator: Kalos, M. H.
Object Type: Article
System: The UNT Digital Library
D-dualized D-brane (open access)

D-dualized D-brane

We further investigate the dimensional duality (D-duality) proposed in arXiv: 0705.0550 by mainly focusing on the properties of D-branes in this background. We derive the world-sheet correspondence of static D-branes, and discuss the fate of non-static D-branes from the world-sheet viewpoint. The quantum string production with or without D-branes is also studied fromthe time-like Liouville theory. We find that the closed string production from the background is much larger than that from D-branes decaying into nothing.
Date: June 6, 2007
Creator: Nakayama, Yu & Nakayama, Yu
Object Type: Article
System: The UNT Digital Library
Isopiestic Investigation of the Osmotic and Activity Coefficients of {yMgCl2 + (1 - y)MgSO4}(aq) and the Osmotic Coefficients of Na2SO4.MgSO4(aq) at 298.15 K (open access)

Isopiestic Investigation of the Osmotic and Activity Coefficients of {yMgCl2 + (1 - y)MgSO4}(aq) and the Osmotic Coefficients of Na2SO4.MgSO4(aq) at 298.15 K

Isopiestic vapor pressure measurements were made for {l_brace}yMgCl{sub 2} + (1-y)MgSO{sub 4}{r_brace}(aq) solutions with MgCl{sub 2} ionic strength fractions of y = 0, 0.1997, 0.3989, 0.5992, 0.8008, and (1) at the temperature 298.15 K, using KCl(aq) as the reference standard. These measurements for the mixtures cover the ionic strength range I = 0.9794 to 9.4318 mol {center_dot} kg{sup -1}. In addition, isopiestic measurements were made with NaCl(aq) as reference standard for mixtures of {l_brace}xNa{sub 2}SO{sub 4} + (1-x)MgSO{sub 4}{r_brace}(aq) with the molality fraction x = 0.50000 that correspond to solutions of the evaporite mineral bloedite (astrakanite), Na{sub 2}Mg(SO{sub 4}){sub 2} {center_dot} 4H{sub 2}O(cr). The total molalities, m{sub T} = m(Na{sub 2}SO{sub 4}) + m(MgSO{sub 4}), range from m{sub T} = 1.4479 to 4.4312 mol {center_dot} kg{sup -1} (I = 5.0677 to 15.509 mol {center_dot} kg{sup -1}), where the uppermost concentration is the highest oversaturation molality that could be achieved by isothermal evaporation of the solvent at 298.15 K. The parameters of an extended ion-interaction (Pitzer) model for MgCl2(aq) at 298.15 K, which were required for an analysis of the {l_brace}yMgCl{sub 2} + (1-y)MgSO{sub 4}{r_brace}(aq) mixture results, were evaluated up to I = 12.025 mol {center_dot} kg{sup -1} from published isopiestic …
Date: June 6, 2007
Creator: Miladinovic, J; Ninkovic, R; Todorovic, M & Rard, J A
Object Type: Article
System: The UNT Digital Library
Transport of Dust Particles in Tokamak Devices (open access)

Transport of Dust Particles in Tokamak Devices

Recent advances in the dust transport modeling in tokamak devices are discussed. Topics include: (1) physical model for dust transport; (2) modeling results on dynamics of dust particles in plasma; (3) conditions necessary for particle growth in plasma; (4) dust spreading over the tokamak; (5) density profiles for dust particles and impurity atoms associated with dust ablation in tokamak plasma; and (6) roles of dust in material/tritium migration.
Date: June 6, 2006
Creator: Pigarov, A Y; Smirnov, R D; Krasheninnikov, S I; Rognlien, T D & Rozenberg, M
Object Type: Article
System: The UNT Digital Library
Electron Dynamics of Silicon Surface States: Second-Harmonic HoleBurning on Si(111)7x7 (open access)

Electron Dynamics of Silicon Surface States: Second-Harmonic HoleBurning on Si(111)7x7

The ultrafast dynamics of electronic excitations of the surface dangling bond states of Si(111) 7 x 7 has been investigated by second harmonic generation as a probe of transient spectral hole burning. Spectral holes induced by a 100 fs pump at {approx_equal} 1.5 eV and their decay are interpreted in terms of electronic dephasing times as short as 15 fs. This fast time scale together with the strong excitation-induced dephasing observed is interpreted in terms of carrier-carrier scattering. In addition, strong coupling of the electronic excitation to surface optical phonons is observed and attributed to the localization at adatom sites of a surface electronic excitation and a surface phonon mode.
Date: June 6, 2005
Creator: McGuire, John A.; Raschke, Markus B. & Shen, Yuen-Ron
Object Type: Article
System: The UNT Digital Library
Measurement of the Neutral B Meson-B Bar Meson Oscillation Frequency Using Dilepton Events at BABAR (open access)

Measurement of the Neutral B Meson-B Bar Meson Oscillation Frequency Using Dilepton Events at BABAR

This dissertation describes the measurement of the B{sup 0}{bar B}{sup 0} oscillation frequency {Delta}m{sub d} with a sample of 122 x 10{sup 6} B{bar B} pairs collected with the BABAR detector at the PEP-II asymmetric B Factory at the Stanford Linear Accelerator Center. A fully inclusive approach is used to select dilepton events in which B meson decays semileptonically and the lepton's charge is employed to identify the flavor of each B meson. The oscillation frequency {Delta}m{sub d} is extracted from the time evolution of the dilepton events. A maximum likelihood fit to the same sign and opposite sign events simultaneously gives {Delta}m{sub d} = (0.485 {+-} 0.009(stat.) {+-} 0.010(syst.)) ps{sup 1} where the first uncertainty is statistical and the second is systematic. This is one of the single most precise measurements of the B{sup 0}{bar B}{sup 0} oscillation frequency to date.
Date: June 6, 2006
Creator: Chao, Ming & /UC, Irvine
Object Type: Report
System: The UNT Digital Library
Smooth Light Curves from a Bumpy Ride: Relativistic Blast Wave Encounters a Density Jump (open access)

Smooth Light Curves from a Bumpy Ride: Relativistic Blast Wave Encounters a Density Jump

Some gamma-ray burst (GRB) afterglow light curves show significant variability, which often includes episodes of rebrightening. Such temporal variability had been attributed in several cases to large fluctuations in the external density, or density ''bumps''. Here we carefully examine the effect of a sharp increase in the external density on the afterglow light curve by considering, for the first time, a full treatment of both the hydrodynamic evolution and the radiation in this scenario. To this end we develop a semi-analytic model for the light curve and carry out several elaborate numerical simulations using a one dimensional hydrodynamic code together with a synchrotron radiation code. Two spherically symmetric cases are explored in detail--a density jump in a uniform external medium, and a wind termination shock. The effect of density clumps is also constrained. Contrary to previous works, we find that even a very sharp (modeled as a step function) and large (by a factor of a >> 1) increase in the external density does not produce sharp features in the light curve, and cannot account for significant temporal variability in GRB afterglows. For a wind termination shock, the light curve smoothly transitions between the asymptotic power laws over about one …
Date: June 6, 2006
Creator: Nakar, Ehud; /Caltech; Granot, Jonathan & /KIPAC, Menlo Park
Object Type: Article
System: The UNT Digital Library
DETERMINATION OF LIQUID FILM THICKNESS FOLLOWING DRAINING OF CONTACTORS, VESSELS, AND PIPES IN THE MCU PROCESS (open access)

DETERMINATION OF LIQUID FILM THICKNESS FOLLOWING DRAINING OF CONTACTORS, VESSELS, AND PIPES IN THE MCU PROCESS

The Department of Energy (DOE) identified the caustic side solvent extraction (CSSX) process as the preferred technology to remove cesium from radioactive waste solutions at the Savannah River Site (SRS). As a result, Washington Savannah River Company (WSRC) began designing and building a Modular CSSX Unit (MCU) in the SRS tank farm to process liquid waste for an interim period until the Salt Waste Processing Facility (SWPF) begins operations. Both the solvent and the strip effluent streams could contain high concentrations of cesium which must be removed from the contactors, process tanks, and piping prior to performing contactor maintenance. When these vessels are drained, thin films or drops will remain on the equipment walls. Following draining, the vessels will be flushed with water and drained to remove the flush water. The draining reduces the cesium concentration in the vessels by reducing the volume of cesium-containing material. The flushing, and subsequent draining, reduces the cesium in the vessels by diluting the cesium that remains in the film or drops on the vessel walls. MCU personnel requested that Savannah River National Laboratory (SRNL) researchers conduct a literature search to identify models to calculate the thickness of the liquid films remaining in the …
Date: June 6, 2006
Creator: Poirier, M; Fernando Fondeur, F & Samuel Fink, S
Object Type: Report
System: The UNT Digital Library
Strenghening Safeguards Authorities and Institutions (open access)

Strenghening Safeguards Authorities and Institutions

The International Atomic Energy Agency (IAEA) safeguards system has changed in major ways from the establishment of the IAEA in 1957 until the present. Changes include strengthening the legal framework of safeguards; improvements in concepts and approaches for safeguards implementation; and significant improvements in the technical tools available to inspectors. In this paper, we explore three broad areas related to strengthening safeguards authorities and institutions: integrated safeguards and State-Level Approaches; special inspections; and NPT withdrawal and the continuation of safeguards.
Date: June 6, 2008
Creator: Goodman, M.; Lockwood, D.; Rosenthal, M. D. & Tape, J. W.
Object Type: Article
System: The UNT Digital Library
Scoping Study for Demand Respose DFT II Project in Morgantown, WV (open access)

Scoping Study for Demand Respose DFT II Project in Morgantown, WV

This scoping study describes the underlying data resources and an analysis tool for a demand response assessment specifically tailored toward the needs of the Modern Grid Initiatives Demonstration Field Test in Phase II in Morgantown, WV. To develop demand response strategies as part of more general distribution automation, automated islanding and feeder reconfiguration schemes, an assessment of the demand response resource potential is required. This report provides the data for the resource assessment for residential customers and describes a tool that allows the analyst to estimate demand response in kW for each hour of the day, by end-use, season, day type (weekday versus weekend) with specific saturation rates of residential appliances valid for the Morgantown, WV area.
Date: June 6, 2008
Creator: Lu, Shuai & Kintner-Meyer, Michael CW
Object Type: Report
System: The UNT Digital Library
Simulation of Large Parallel Plasma Flows in the Tokamak SOL Driven by Cross-Field Transport Asymmetries (open access)

Simulation of Large Parallel Plasma Flows in the Tokamak SOL Driven by Cross-Field Transport Asymmetries

Large-Mach-number parallel plasma flows in the single-null SOL of different tokamaks are simulated with multi-fluid transport code UEDGE. The key role of poloidal asymmetry of cross-field plasma transport as the driving mechanism for such flows is discussed. The impact of ballooning-like diffusive and convective transport and plasma flows on divertor detachment, material migration, impurity flows, and erosion/deposition profiles is studied. The results on well-balanced double null plasma modeling that are indicative of strong asymmetry of cross-field transport are presented.
Date: June 6, 2006
Creator: Pigarov, A Y; Krasheninnikov, S I; LaBombard, B & Rognlien, T D
Object Type: Article
System: The UNT Digital Library
Remote Monitoring and Tracking of UF6 Cylinders Using Long-Range Passive Ultra-wideband (UWB) RFID Tags (open access)

Remote Monitoring and Tracking of UF6 Cylinders Using Long-Range Passive Ultra-wideband (UWB) RFID Tags

An IAEA Technical Meeting on Techniques for IAEA Verification of Enrichment Activities identified 'smart tags' as a technology that should be assessed for tracking and locating UF6 cylinders. Although there is vast commercial industry working on RFID systems, the vulnerabilities of commercial products are only beginning to emerge. Most of the commercially off-the-shelf (COTS) RFID systems operate in very narrow frequency bands, making them vulnerable to detection, jamming and tampering and also presenting difficulties when used around metals (i.e. UF6 cylinders). Commercial passive RFID tags have short range, while active RFID tags that provide long ranges have limited lifetimes. There are also some concerns with the introduction of strong (narrowband) radio frequency signals around radioactive and nuclear materials. Considering the shortcomings of commercial RFID systems, in their current form, they do not offer a promising solution for continuous monitoring and tracking of UF6 cylinders. In this paper, we identify the key challenges faced by commercial RFID systems for monitoring UF6 cylinders, and introduce an ultra-wideband approach for tag/reader communications that addresses most of the identified challenges for IAEA safeguards applications.
Date: June 6, 2007
Creator: Nekoogar, F. & Dowla, F.
Object Type: Article
System: The UNT Digital Library
Computations of Eigenpair Subsets with the MRRR Algorithm (open access)

Computations of Eigenpair Subsets with the MRRR Algorithm

The main advantage of inverse iteration over the QR algorithm and Divide & Conquer for the symmetric tridiagonal eigenproblem is that subsets of eigenpairs can be computed at reduced cost. The MRRR algorithm (MRRR = Multiple Relatively Robust Representations) is a clever variant of inverse iteration without the need for reorthogonalization. STEGR, the current version of MRRR in LAPACK 3.0, does not allow for subset computations. The next release of STEGR is designed to compute a (sub-)set of k eigenpairs with {Omicron}(kn) operations. Because of the special way in which eigenvectors are computed, MRRR subset computations are more complicated than when using inverse iteration. Unlike the latter, MRRR sometimes cannot ignore the unwanted part of the spectrum. We describe the problems with what we call 'false singletons'. These are eigenvalues that appear to be isolated with respect to the wanted eigenvalues but in fact belong to a tight cluster of unwanted eigenvalues. This paper analyzes these complications and ways to deal with them.
Date: June 6, 2006
Creator: Marques, Osni A.; Parlett, Beresford N. & Vomel, Christof
Object Type: Article
System: The UNT Digital Library
Thermal degradation in a trimodal PDMS network by 1H Multiple Quantum NMR (open access)

Thermal degradation in a trimodal PDMS network by 1H Multiple Quantum NMR

Thermal degradation of a filled, crosslinked siloxane material synthesized from PDMS chains of three different average molecular weights and with two different crosslinking species has been studied by {sup 1}H Multiple Quantum (MQ) NMR methods. Multiple domains of polymer chains were detected by MQ NMR exhibiting Residual Dipolar Coupling (<{Omega}{sub d}>) values of 200 Hz and 600 Hz, corresponding to chains with high average molecular weight between crosslinks and chains with low average molecular weight between crosslinks or near the multifunctional crosslinking sites. Characterization of the <{Omega}{sub d}> values and changes in <{Omega}{sub d}> distributions present in the material were studied as a function of time at 250 C and indicates significant time dependent degradation. For the domains with low <{Omega}{sub d}>, a broadening in the distribution was observed with aging time. For the domain with high <{Omega}{sub d}>, increases in both the mean <{Omega}{sub d}> and the width in <{Omega}{sub d}> were observed with increasing aging time. Isothermal Thermal Gravimetric Analysis (TGA) reveals a 3% decrease in weight over 20 hours of aging at 250 C. Degraded samples also were analyzed by traditional solid state {sup 1}H NMR techniques and offgassing products were identified by Solid Phase MicroExtraction followed …
Date: June 6, 2007
Creator: Giuliani, J R; Gjersing, E L; Chinn, S C; Jones, T V; Wilson, T S; Alviso, C T et al.
Object Type: Article
System: The UNT Digital Library
A hybrid method for computing forces on curved dislocations threading to free surfaces (open access)

A hybrid method for computing forces on curved dislocations threading to free surfaces

Dislocations threading to free surfaces present a challenge for numerical implementation of traction-free boundary conditions. The difficulty arises when canonical (singular) solutions of dislocation mechanics are used in combination with the Finite Element or Boundary Element (Green's function) methods. A new hybrid method is developed here in which the singular part and the non-singular (regular) part of the image stress are dealt with separately. A special analytical solution for a semi-infinite straight dislocation intersecting the surface of a half-space is used to account for the singular part of the image stress, while the remaining regular part of the image stress field is treated using the standard Finite Element Method. The numerical advantages of such regularization are demonstrated with examples.
Date: June 6, 2005
Creator: Tang, M; Cai, W; Xu, G & Bulatov, V V
Object Type: Article
System: The UNT Digital Library
Bobbin-Tool Friction-Stir Welding of Thick-Walled Aluminum Alloy Pressure Vessels (open access)

Bobbin-Tool Friction-Stir Welding of Thick-Walled Aluminum Alloy Pressure Vessels

It was desired to assemble thick-walled Al alloy 2219 pressure vessels by bobbin-tool friction-stir welding. To develop the welding-process, mechanical-property, and fitness-for-service information to support this effort, extensive friction-stir welding-parameter studies were conducted on 2.5 cm. and 3.8 cm. thick 2219 Al alloy plate. Starting conditions of the plate were the fully-heat-treated (-T62) and in the annealed (-O) conditions. The former condition was chosen with the intent of using the welds in either the 'as welded' condition or after a simple low-temperature aging treatment. Since preliminary stress-analyses showed that stresses in and near the welds would probably exceed the yield-strength of both 'as welded' and welded and aged weld-joints, a post-weld solution-treatment, quenching, and aging treatment was also examined. Once a suitable set of welding and post-weld heat-treatment parameters was established, the project divided into two parts. The first part concentrated on developing the necessary process information to be able to make defect-free friction-stir welds in 3.8 cm. thick Al alloy 2219 in the form of circumferential welds that would join two hemispherical forgings with a 102 cm. inside diameter. This necessitated going to a bobbin-tool welding-technique to simplify the tooling needed to react the large forces generated in friction-stir …
Date: June 6, 2007
Creator: Dalder, E C; Pastrnak, J W; Engel, J; Forrest, R S; Kokko, E; Ternan, K M et al.
Object Type: Article
System: The UNT Digital Library
A First Look at Beam Diagnostics for the Rhic Electron Cooling Project. (open access)

A First Look at Beam Diagnostics for the Rhic Electron Cooling Project.

High energy electron cooling [1] is essential to meet the luminosity specification for RHIC II [2]. In preparation for electron cooling, an Energy Recovery Linac (ERL) test facility [3] is under construction at BNL. A preliminary description of Diagnostics for the ERL was presented at an earlier workshop [4]. A significant portion of the eCooling Diagnostics will be a simple extension of those developed for the ERL test facility. In this paper we present a preliminary report on eCooling Diagnostics. We summarize the planned conventional Diagnostics, and follow with more detailed descriptions of Diagnostics specialized to the requirements of high-energy magnetized cooling.
Date: June 6, 2005
Creator: Cameron, P.; Ben-Zvi, Ilan; Kewisch, J. & Litvinenko, V.
Object Type: Article
System: The UNT Digital Library
Ion storage ring measurements of dielectronic recombination for astrophysically relevant Feq+ ions (open access)

Ion storage ring measurements of dielectronic recombination for astrophysically relevant Feq+ ions

Iron ions provide many valuable plasma diagnostics for cosmic plasmas. The accuracy of these diagnostics, however, often depends on an accurate understanding of the ionization structure of the emitting gas. Dielectronic recombination (DR) is the dominant electron-ion recombination mechanism for most iron ions in cosmic plasmas. Using the heavy-ion storage ring at the Max-Planck-Institute for Nuclear Physics in Heidelberg, Germany, we have measured the low temperature DR rates for Fe{sup q+} where q = 15, 17, 18, and 19. These rates are important for photoionized gases which form in the media surrounding active galactic nuclei, X-ray binaries, and cataclysmic variables. Our results demonstrate that commonly used theoretical approximations for calculating low temperature DR rates can easily under- or over-estimate the DR rate by a factor of {approx} 2 or more. As essentially all DR rates used for modeling photoionized gases are calculated using these approximations, our results indicate that new DR rates are needed for almost all charge states of cosmically abundant elements. Measurements are underway for other charge states of iron.
Date: June 6, 2000
Creator: Savin, D. W.; Badnell, N. R.; Bartsch, T.; Brandau, C.; Chen, M. H.; Grieser, M. et al.
Object Type: Article
System: The UNT Digital Library
The Effects and Possible Origins of Mains Ripple in the Vicinity of the Betatron Spectrum. (open access)

The Effects and Possible Origins of Mains Ripple in the Vicinity of the Betatron Spectrum.

With the advent of significant improvement in the sensitivity of observation of the betatron spectrum, the appearance of spectral lines at harmonics of the mains power frequency has been observed in the PS and SPS at CERN, the Tevatron at FNAL, and RHIC at BNL. These lines are potentially problematic for accurate tune tracking and the implementation of tune feedback We discuss the possible origins of these lines, and present data to support our discussion.
Date: June 6, 2005
Creator: Cameron, P.; Gasior, M.; Jones, R. & Tan, C.
Object Type: Article
System: The UNT Digital Library
ADVANCES TOWARDS THE MEASUREMENT AND CONTROL LHC TUNE AND CHROMATICITY (open access)

ADVANCES TOWARDS THE MEASUREMENT AND CONTROL LHC TUNE AND CHROMATICITY

Requirements for tune and chromaticity control in most superconducting hadron machines, and in particular the LHC, are stringent. In order to reach nominal operation, the LHC will almost certainly require feedback on both tune and chromaticity. Experience at RHIC has also shown that coupling control is crucial to successful tune feedback. A prototype baseband phase-locked loop (PLL) tune measurement system has recently been brought into operation at RHIC as part of the US LHC Accelerator Research Program (LARP). We report on the performance of that system and compare it with the extensive accumulation of data from the RHIC 245MHz PLL.
Date: June 6, 2005
Creator: Cameron, P.; Cupolo, J.; Degen, C.; Dellapenna, A.; Hoff, L.; Mead, J. et al.
Object Type: Article
System: The UNT Digital Library
Pyramid Lake Reneweable Energy Plan (open access)

Pyramid Lake Reneweable Energy Plan

The Pyramid Lake Renewable Energy Plan covers these areas: energy potential (primarily focusing on geothermal resource potential, but also more generally addressing wind energy potential); renewable energy market potential; transmission system development; geothermal direct use potential; and business structures to accomplish the development objectives of the Pyramid Lake Paiute Tribe.
Date: June 6, 2009
Creator: High Desert Geoculture, LLC
Object Type: Report
System: The UNT Digital Library
Crystal structure of Thermotoga maritima TM0439: implications for the mechanism of bacterial GntR transcription regulators with Zn2+-binding FCD domains (open access)

Crystal structure of Thermotoga maritima TM0439: implications for the mechanism of bacterial GntR transcription regulators with Zn2+-binding FCD domains

The GntR superfamily of dimeric transcription factors, with more than 6200 members encoded in bacterial genomes, are characterized by N-terminal winged helix (WH) DNA-binding domains and diverse C-terminal, regulatory domains, which provide a basis for the classification of the constituent families. The largest of these families, FadR, contains nearly 3000 proteins with all a-helical regulatory domains classified into two related Pfam families: FadR{_}C and FCD. Only two crystal structures of the FadR family members, i.e. the E. coli FadR protein and the LldR from C. glutamicum, have been described to date in literature. Here we describe the crystal structure of TM0439, a GntR regulator with an FCD domain, found in the Thermotoga maritima genome. The FCD domain is similar to that of the LldR regulator, and contains a buried metal binding site. Using atomic absorption spectroscopy and Trp fluorescence, we show that the recombinant protein contains bound Ni{sup 2+} ions, but it is able to bind Zn{sup 2+} with K{sub D} < 70 nM . We conclude that Zn{sup 2+} is the likely physiological metal, where it may perform either or both structural and regulatory roles. Finally, we compare the TM0439 structure to two other FadR family structures recently deposited …
Date: June 6, 2009
Creator: Zheng, Meiying; Cooper, David; Grossoehmerb, Nickolas; Yu, Minmin; Hung, Li-Wei; Cieslik, Murcin et al.
Object Type: Article
System: The UNT Digital Library
A THERMODYNAMIC ANALYSIS OF THE SO2/H2SO4 SYSTEM IN SO2-DEPOLARIZED ELECTROLYSIS (open access)

A THERMODYNAMIC ANALYSIS OF THE SO2/H2SO4 SYSTEM IN SO2-DEPOLARIZED ELECTROLYSIS

None
Date: June 6, 2009
Creator: Gorensek, M.; Staser, J.; Stanford, T. & Weidner, J.
Object Type: Article
System: The UNT Digital Library