Resource Type

Subtask 3.16 - Low-BTU Field Gas Application to Microturbines (open access)

Subtask 3.16 - Low-BTU Field Gas Application to Microturbines

Low-energy gas at oil production sites presents an environmental challenge to the sites owners. Typically, the gas is managed in flares. Microturbines are an effective alternative to flaring and provide on-site electricity. Microturbines release 10 times fewer NOx emissions than flaring, on a methane fuel basis. The limited acceptable fuel range of microturbines has prevented their application to low-Btu gases. The challenge of this project was to modify a microturbine to operate on gases lower than 350 Btu/scf (the manufacturer's lower limit). The Energy & Environmental Research Center successfully operated a Capstone C30 microturbine firing gases between 100-300 Btu/scf. The microturbine operated at full power firing gases as low as 200 Btu/scf. A power derating was experienced firing gases below 200 Btu/scf. As fuel energy content decreased, NO{sub x} emissions decreased, CO emissions increased, and unburned hydrocarbons remained less than 0.2 ppm. The turbine was self-started on gases as low as 200 Btu/scf. These results are promising for oil production facilities managing low-Btu gases. The modified microturbine provides an emission solution while returning valuable electricity to the oilfield.
Date: June 15, 2007
Creator: Schmidt, Darren & Oster, Benjamin
System: The UNT Digital Library
Advanced Hydraulic Fracturing Technology for Unconventional Tight Gas Reservoirs (open access)

Advanced Hydraulic Fracturing Technology for Unconventional Tight Gas Reservoirs

The objectives of this project are to develop and test new techniques for creating extensive, conductive hydraulic fractures in unconventional tight gas reservoirs by statistically assessing the productivity achieved in hundreds of field treatments with a variety of current fracturing practices ranging from 'water fracs' to conventional gel fracture treatments; by laboratory measurements of the conductivity created with high rate proppant fracturing using an entirely new conductivity test - the 'dynamic fracture conductivity test'; and by developing design models to implement the optimal fracture treatments determined from the field assessment and the laboratory measurements. One of the tasks of this project is to create an 'advisor' or expert system for completion, production and stimulation of tight gas reservoirs. A central part of this study is an extensive survey of the productivity of hundreds of tight gas wells that have been hydraulically fractured. We have been doing an extensive literature search of the SPE eLibrary, DOE, Gas Technology Institute (GTI), Bureau of Economic Geology and IHS Energy, for publicly available technical reports about procedures of drilling, completion and production of the tight gas wells. We have downloaded numerous papers and read and summarized the information to build a database that will …
Date: June 19, 2007
Creator: Holditch, Stephen; Hill, A. Daniel & Zhu, D.
System: The UNT Digital Library
JV Task 98 - Controlling Mercury Emissions for Utilities Firing Lignites from North America (open access)

JV Task 98 - Controlling Mercury Emissions for Utilities Firing Lignites from North America

This project compiled and summarized the findings and conclusions of research, development, and demonstration projects on controlling mercury from lignite coals. A significant amount of work has been conducted since 1994 on mercury in lignite, mercury measurement in flue gases, sorbent, sorbent enhancement additives, oxidation agent development, and full-scale demonstration of mercury control technologies. This report is focused on providing the lignite industry with an understanding of mercury issues associated with the combustion of lignite, as well as providing vital information on the methods to control mercury emissions in coal-fired power plants.
Date: June 15, 2007
Creator: Benson, Steven
System: The UNT Digital Library
Advanced, Low/Zero Emission Boiler Design and Operation (open access)

Advanced, Low/Zero Emission Boiler Design and Operation

In partnership with the U.S. Department of Energy's National Energy Technology Laboratory, B&W and Air Liquide are developing and optimizing the oxy-combustion process for retrofitting existing boilers as well as new plants. The main objectives of the project is to: (1) demonstrate the feasibility of the oxy-combustion technology with flue gas recycle in a 5-million Btu/hr coal-fired pilot boiler, (2) measure its performances in terms of emissions and boiler efficiency while selecting the right oxygen injection and flue gas recycle strategies, and (3) perform technical and economic feasibility studies for application of the technology in demonstration and commercial scale boilers. This document summarizes the work performed during the period of performance of the project (Oct 2002 to June 2007). Detailed technical results are reported in corresponding topical reports that are attached as an appendix to this report. Task 1 (Site Preparation) has been completed in 2003. The experimental pilot-scale O{sub 2}/CO{sub 2} combustion tests of Task 2 (experimental test performance) has been completed in Q2 2004. Process simulation and cost assessment of Task 3 (Techno-Economic Study) has been completed in Q1 2005. The topical report on Task 3 has been finalized and submitted to DOE in Q3 2005. The calculations …
Date: June 30, 2007
Creator: /Wilcox, Babcock; Geological, Illinois State; Parsons, Worley & Group, Parsons Infrastructure /Technology
System: The UNT Digital Library
β-Suppression of Alfvén Cascade Modes in the National Spherical Torus Experiment (open access)

β-Suppression of Alfvén Cascade Modes in the National Spherical Torus Experiment

The coupling of Alfvén Cascade (AC) modes or reversed-shear Alfvén eigenmodes (rsAE) to Geodesic Acoustic Modes (GAM) implies that the range of the AC frequency sweep is reduced as the electron β is increased. This model provides an explanation for the otherwise surprising absence of AC modes in reverse shear NSTX plasmas, given the rich spectrum of beam-driven instabilities typically seen in NSTX. In experiments done at very low β to investigate this prediction, AC modes were seen, and as the βe was increased from shot to shot, the range of the AC frequency sweep was reduced, in agreement with this theoretical prediction.
Date: June 29, 2007
Creator: Fredrickson, E D; Gorelenkov, N N; Heidbrink, W W; Kubota, S; Levinton, F M; Yuh, H et al.
System: The UNT Digital Library
Dual Phase Membrane for High Temperature CO2 Separation (open access)

Dual Phase Membrane for High Temperature CO2 Separation

This project aimed at synthesis of a new inorganic dual-phase carbonate membrane for high temperature CO{sub 2} separation. Metal-carbonate dual-phase membranes were prepared by the direct infiltration method and the synthesis conditions were optimized. Permeation tests for CO{sub 2} and N{sub 2} from 450-750 C showed very low permeances of those two gases through the dual-phase membrane, which was expected due to the lack of ionization of those two particular gases. Permeance of the CO{sub 2} and O{sub 2} mixture was much higher, indicating that the gases do form an ionic species, CO{sub 3}{sup 2-}, enhancing transport through the membrane. However, at temperatures in excess of 650 C, the permeance of CO{sub 3}{sup 2-} decreased rapidly, while predictions showed that permeance should have continued to increase with temperature. XRD data obtained from used membrane indicated that lithium iron oxides formed on the support surface. This lithium iron oxide layer has a very low conductivity, which drastically reduces the flow of electrons to the CO{sub 2}/O{sub 2} gas mixture; thus limiting the formation of the ionic species required for transport through the membrane. These results indicated that the use of stainless steel supports in a high temperature oxidative environment can lead …
Date: June 30, 2007
Creator: Lin, Jerry
System: The UNT Digital Library
The Homogeneus Forcing of Mercury Oxidation to provide Low-Cost Capture (open access)

The Homogeneus Forcing of Mercury Oxidation to provide Low-Cost Capture

Trace amounts of mercury are found in all coals. During combustion, or during thermal treatment in advanced coal processes, this mercury is vaporized and can be released to the atmosphere with the ultimate combustion products. This has been a cause for concern for a number of years, and has resulted in a determination by the EPA to regulate and control these emissions. Present technology does not, however, provide inexpensive ways to capture or remove mercury. Mercury that exits the furnace in the oxidized form (HgCl{sub 2}) is known to much more easily captured in existing pollution control equipment (e.g., wet scrubbers for SO{sub 2}), principally due to its high solubility in water. Work funded by DOE has helped understand the chemical kinetic processes that lead to mercury oxidation in furnaces. The scenario is as follows. In the flame the mercury is quantitatively vaporized as elemental mercury. Also, the chlorine in the fuel is released as HCl. The direct reaction Hg+HCl is, however, far too slow to be of practical consequence in oxidation. The high temperature region does supports a small concentration of atomic chlorine. As the gases cool (either in the furnace convective passes, in the quench prior to cold …
Date: June 30, 2007
Creator: Kramlich, John & Castiglone, Linda
System: The UNT Digital Library
Inf-sup estimates for the Stokes problem in a periodic channel (open access)

Inf-sup estimates for the Stokes problem in a periodic channel

We derive estimates of the Babuska-Brezzi inf-sup constant {beta} for two-dimensional incompressible flow in a periodic channel with one flat boundary and the other given by a periodic, Lipschitz continuous function h. If h is a constant function (so the domain is rectangular), we show that periodicity in one direction but not the other leads to an interesting connection between {beta} and the unitary operator mapping the Fourier sine coefficients of a function to its Fourier cosine coefficients. We exploit this connection to determine the dependence of {beta} on the aspect ratio of the rectangle. We then show how to transfer this result to the case that h is C{sup 1,1} or even C{sup 0,1} by a change of variables. We avoid non-constructive theorems of functional analysis in order to explicitly exhibit the dependence of {beta} on features of the geometry such as the aspect ratio, the maximum slope, and the minimum gap thickness (if h passes near the substrate). We give an example to show that our estimates are optimal in their dependence on the minimum gap thickness in the C{sup 1,1} case, and nearly optimal in the Lipschitz case.
Date: June 27, 2007
Creator: Wilkening, Jon
System: The UNT Digital Library
RADTRAN/RADCAT user guide. (open access)

RADTRAN/RADCAT user guide.

RADTRAN is a program and code for calculating the risks of transporting radioactive materials. The first versions of the program, RADTRAN I and II, were developed for NUREG-0170 (USNRC, 1977), the first environmental impact statement on transportation of radioactive materials. RADTRAN and its associated software have undergone a number of improvements and advances consistent with improvements in computer technology.
Date: June 1, 2007
Creator: O'Donnell, Brandon M. (University of Michigan); Hinojosa, Daniel; Weiner, Ruth F.; Heames, Terence John (Alion Science, Inc.); Orcutt, David J. (University of Michigan) & Mills, George Scott
System: The UNT Digital Library
Carbon Dioxide Capture from Flue Gas Using Dry Regenerable Sorbents (open access)

Carbon Dioxide Capture from Flue Gas Using Dry Regenerable Sorbents

Regenerable sorbents based on sodium carbonate (Na{sub 2}CO{sub 3}) can be used to separate carbon dioxide (CO{sub 2}) from coal-fired power plant flue gas. Upon thermal regeneration and condensation of water vapor, CO{sub 2} is released in a concentrated form that is suitable for reuse or sequestration. During the research project described in this report, the technical feasibility and economic viability of a thermal-swing CO{sub 2} separation process based on dry, regenerable, carbonate sorbents was confirmed. This process was designated as RTI's Dry Carbonate Process. RTI tested the Dry Carbonate Process through various research phases including thermogravimetric analysis (TGA); bench-scale fixed-bed, bench-scale fluidized-bed, bench-scale co-current downflow reactor testing; pilot-scale entrained-bed testing; and bench-scale demonstration testing with actual coal-fired flue gas. All phases of testing showed the feasibility of the process to capture greater than 90% of the CO{sub 2} present in coal-fired flue gas. Attrition-resistant sorbents were developed, and these sorbents were found to retain their CO{sub 2} removal activity through multiple cycles of adsorption and regeneration. The sodium carbonate-based sorbents developed by RTI react with CO{sub 2} and water vapor at temperatures below 80 C to form sodium bicarbonate (NaHCO3) and/or Wegscheider's salt. This reaction is reversed at temperatures …
Date: June 30, 2007
Creator: Nelson, Thomas; Green, David; Box, Paul; Gupta, Raghubir & Henningsen, Gennar
System: The UNT Digital Library
ACRF Instrumentation Status: New, Current, and Future June 2007 (open access)

ACRF Instrumentation Status: New, Current, and Future June 2007

The purpose of this report is to provide a concise but comprehensive overview of Atmospheric Radiation Measurement Program Climate Research Facility instrumentation status. The report is divided into four sections: (1) new instrumentation in the process of being acquired and deployed, (2) existing instrumentation and progress on improvements or upgrades, (3) proposed future instrumentation, and (4) Small Business Innovation Research instrument development.
Date: June 1, 2007
Creator: Liljegren, J. C.
System: The UNT Digital Library
Building America Best Practices Series, Volume 6: High-Performance Home Technologies: Solar Thermal & Photovoltaic Systems (open access)

Building America Best Practices Series, Volume 6: High-Performance Home Technologies: Solar Thermal & Photovoltaic Systems

This guide is was written by PNNL for the US Department of Energy's Building America program to provide information for residential production builders interested in building near zero energy homes. The guide provides indepth descriptions of various roof-top photovoltaic power generating systems for homes. The guide also provides extensive information on various designs of solar thermal water heating systems for homes. The guide also provides construction company owners and managers with an understanding of how solar technologies can be added to their homes in a way that is cost effective, practical, and marketable. Twelve case studies provide examples of production builders across the United States who are building energy-efficient homes with photovoltaic or solar water heating systems.
Date: June 4, 2007
Creator: Baechler, Michael C.; Gilbride, Theresa L.; Ruiz, Kathleen A.; Steward, Heidi E. & Love, Pat M.
System: The UNT Digital Library
Calcium Carbonate Produced by Coccolithophorid Algae in Long Term, Carbon Dioxide Sequestration (open access)

Calcium Carbonate Produced by Coccolithophorid Algae in Long Term, Carbon Dioxide Sequestration

Predictions of increasing levels of anthropogenic carbon dioxide (CO{sub 2}) and the specter of global warming have intensified research efforts to identify ways to sequester carbon. A number of novel avenues of research are being considered, including bioprocessing methods to promote and accelerate biosequestration of CO{sub 2} from the environment through the growth of organisms such as coccolithophorids, which are capable of sequestering CO{sub 2} relatively permanently. Calcium and magnesium carbonates are currently the only proven, long-term storage reservoirs for carbon. Whereas organic carbon is readily oxidized and releases CO2 through microbial decomposition on land and in the sea, carbonates can sequester carbon over geologic time scales. This proposal investigates the use of coccolithophorids - single-celled, marine algae that are the major global producers of calcium carbonate - to sequester CO{sub 2} emissions from power plants. Cultivation of coccolithophorids for calcium carbonate (CaCO{sub 3}) precipitation is environmentally benign and results in a stable product with potential commercial value. Because this method of carbon sequestration does not impact natural ecosystem dynamics, it avoids controversial issues of public acceptability and legality associated with other options such as direct injection of CO{sub 2} into the sea and ocean fertilization. Consequently, cultivation of coccolithophorids …
Date: June 30, 2007
Creator: Fabry, V.J.
System: The UNT Digital Library
Composition and Technical Basis for K Basin Settler Sludge Simulant for Inspection, Retrieval, and Pump Testing (open access)

Composition and Technical Basis for K Basin Settler Sludge Simulant for Inspection, Retrieval, and Pump Testing

This report provides the formulation and technical basis for a K Basin Settler Tank Sludge simulant that will be used by the K Basin Closure Project (KBC) to test and develop equipment/approaches for Settler Tank sludge level measurement and retrieval in a mock-up test system of the actual Settler Tanks. The sludge simulant may also be used to demonstrate that the TOYO high pressure positive displacement pump design (reversing valves and hollow balls) is suitable for transfer of Settler Tank sludge from the K West (KW) Basin to the Cold Vacuum Drying Facility (CVDF) (~500 ft). As requested the by the K Basins Sludge Treatment Project (STP) the simulant is comprised of non-radioactive (and non-uranium) constituents.
Date: June 25, 2007
Creator: Schmidt, Andrew J. & Zacher, Alan H.
System: The UNT Digital Library
Ultra High p-doping Material Research for GaN Based Light Emitters (open access)

Ultra High p-doping Material Research for GaN Based Light Emitters

The main goal of the Project is to investigate doping mechanisms in p-type GaN and AlGaN and controllably fabricate ultra high doped p-GaN materials and epitaxial structures. Highly doped p-type GaN-based materials with low electrical resistivity and abrupt doping profiles are of great importance for efficient light emitters for solid state lighting (SSL) applications. Cost-effective hydride vapor phase epitaxial (HVPE) technology was proposed to investigate and develop p-GaN materials for SSL. High p-type doping is required to improve (i) carrier injection efficiency in light emitting p-n junctions that will result in increasing of light emitting efficiency, (ii) current spreading in light emitting structures that will improve external quantum efficiency, and (iii) parameters of Ohmic contacts to reduce operating voltage and tolerate higher forward currents needed for the high output power operation of light emitters. Highly doped p-type GaN layers and AlGaN/GaN heterostructures with low electrical resistivity will lead to novel device and contact metallization designs for high-power high efficiency GaN-based light emitters. Overall, highly doped p-GaN is a key element to develop light emitting devices for the DOE SSL program. The project was focused on material research for highly doped p-type GaN materials and device structures for applications in high …
Date: June 30, 2007
Creator: Dmitriev, Vladimir
System: The UNT Digital Library
Stochastic Ion Heating in a Field-reversed Configuration Geometry by Rotating Magnetic Fields (open access)

Stochastic Ion Heating in a Field-reversed Configuration Geometry by Rotating Magnetic Fields

Ion heating by application of rotating magnetic fields (RMF) to a prolate field-reversed configuration(FRC) is explored by analytical and numerical techniques. For odd-parity RMF (RMFo), perturbation analysis shows ions in figure-8 orbits gain energy at resonances of the RMFo frequency, ωR, with the figure-8 orbital frequency, ω. Since figure-8 orbits tend to gain the most energy from the RMF and are unlikely to escape in the cusp region (where most losses occur), they are optimal candidates for rapid stochastic heating, as compared to cyclotron and betatron orbits. Comparisons are made between heating caused by even- and odd-parity RMFs and between heating in currently operating and in reactor-scale FRC devices.
Date: June 25, 2007
Creator: S.A. Cohen, A.S. Landsman, and A.H. Glasser
System: The UNT Digital Library
Loads Providing Ancillary Services: Review of International Experience (open access)

Loads Providing Ancillary Services: Review of International Experience

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Date: June 1, 2007
Creator: Heffner, Grayson; Goldman, Chuck; Kirby, Brendan J & Kintner-Meyer, Michael
System: The UNT Digital Library
Evaluation of Exothermic Reactions from Bulk-Vitrification Melter Feeds Containing Cellulose (open access)

Evaluation of Exothermic Reactions from Bulk-Vitrification Melter Feeds Containing Cellulose

PNNL has demonstrated that cellulose effectively reduces the amount of molten ionic salt during Bulk Vitrification of simulated Hanford Low Level Waste (LLW). To address concerns about the potential reactivity of cellulose-LLW, PNNL used thermogravimetric analysis, differential thermal analysis, and accelerating rate calorimetry to determine in these preliminary studies that these mixtures will support a self-sustaining reaction if heated to 110°C at adiabatic conditions. Additional testing is recommended.
Date: June 25, 2007
Creator: Scheele, Randall D.; McNamara, Bruce K.; Bagaasen, Larry M.; Bos, Stanley J.; Kozelisky, Anne E. & Berry, Pam
System: The UNT Digital Library
Advanced Safeguards Approaches for New Reprocessing Facilities (open access)

Advanced Safeguards Approaches for New Reprocessing Facilities

U.S. efforts to promote the international expansion of nuclear energy through the Global Nuclear Energy Partnership (GNEP) will result in a dramatic expansion of nuclear fuel cycle facilities in the United States. New demonstration facilities, such as the Advanced Fuel Cycle Facility (AFCF), the Advanced Burner Reactor (ABR), and the Consolidated Fuel Treatment Center (CFTC) will use advanced nuclear and chemical process technologies that must incorporate increased proliferation resistance to enhance nuclear safeguards. The ASA-100 Project, “Advanced Safeguards Approaches for New Nuclear Fuel Cycle Facilities,” commissioned by the NA-243 Office of NNSA, has been tasked with reviewing and developing advanced safeguards approaches for these demonstration facilities. Because one goal of GNEP is developing and sharing proliferation-resistant nuclear technology and services with partner nations, the safeguards approaches considered are consistent with international safeguards as currently implemented by the International Atomic Energy Agency (IAEA). This first report reviews possible safeguards approaches for the new fuel reprocessing processes to be deployed at the AFCF and CFTC facilities. Similar analyses addressing the ABR and transuranic (TRU) fuel fabrication lines at AFCF and CFTC will be presented in subsequent reports.
Date: June 24, 2007
Creator: Durst, Philip C.; Therios, Ike; Bean, Robert; Dougan, A.; Boyer, Brian; Wallace, Richard et al.
System: The UNT Digital Library
Development of a Novel Catalyst for NO Decomposition (open access)

Development of a Novel Catalyst for NO Decomposition

Air pollution arising from the emission of nitrogen oxides as a result of combustion taking place in boilers, furnaces and engines, has increasingly been recognized as a problem. New methods to remove NO{sub x} emissions significantly and economically must be developed. The current technology for post-combustion removal of NO is the selective catalytic reduction (SCR) of NO by ammonia or possibly by a hydrocarbon such as methane. The catalytic decomposition of NO to give N{sub 2} will be preferable to the SCR process because it will eliminate the costs and operating problems associated with the use of an external reducing species. The most promising decomposition catalysts are transition metal (especially copper)-exchanged zeolites, perovskites, and noble metals supported on metal oxides such as alumina, silica, and ceria. The main shortcoming of the noble metal reducible oxide (NMRO) catalysts is that they are prone to deactivation by oxygen. It has been reported that catalysts containing tin oxide show oxygen adsorption behavior that may involve hydroxyl groups attached to the tin oxide. This is different than that observed with other noble metal-metal oxide combinations, which have the oxygen adsorbing on the noble metal and subsequently spilling over to the metal oxide. This observation …
Date: June 22, 2007
Creator: Akyurtlu, Ates & Akyurtlu, Jale F.
System: The UNT Digital Library
Online SAG Mill Pluse Measurement and Optimization (open access)

Online SAG Mill Pluse Measurement and Optimization

The grinding efficiency of semi autogenous milling or ball milling depends on the tumbling motion of the total charge within the mill. Utilization of this tumbling motion for efficient breakage of particles depends on the conditions inside the mill. However, any kind of monitoring device to measure the conditions inside the mill shell during operation is virtually impossible due to the severe environment presented by the tumbling charge. An instrumented grinding ball, which is capable of surviving a few hours and transmitting the impacts it experiences, is proposed here. The spectrum of impacts collected over 100 revolutions of the mills presents the signature of the grinding environment inside mill. This signature could be effectively used to optimize the milling performance by investigating this signature's relation to mill product size, mill throughput, make-up ball size, mill speed, liner profile and ball addition rates. At the same time, it can also be used to design balls and liner systems that can survive longer in the mill. The technological advances made in electronics and communication makes this leap in instrumentation certainly viable. Hence, the instrumented grinding ball offers the ability to qualitatively observe and optimize the milling environment. An instrumented load cell package …
Date: June 30, 2007
Creator: Rajamani, Raj; Delgadillo, Jose & Duriseti, Vishal
System: The UNT Digital Library
Peaceful Uses Bona Fides: Criteria for Evaluation and Case Studies (open access)

Peaceful Uses Bona Fides: Criteria for Evaluation and Case Studies

This study applies a set of indicators to assess the peaceful nature of a state’s nuclear program. Evaluation of a country’s nuclear program relative to these indicators can help the international community to take appropriate actions to ensure that the growth of the global nuclear energy industry proceeds peacefully and to minimize nuclear proliferation risks.
Date: June 6, 2007
Creator: Ajemian, Chris K.; Hazel, Mike; Kessler, Carol E.; Mathews, Carrie E.; Morris, Fred A.; Seward, Amy M. et al.
System: The UNT Digital Library
Enumeration of Salmonids in the Okanogan Basin Using Underwater Video, Performance Period: October 2005 (Project Inception) - 31 December 2006. (open access)

Enumeration of Salmonids in the Okanogan Basin Using Underwater Video, Performance Period: October 2005 (Project Inception) - 31 December 2006.

The Confederated Tribes of the Colville Reservation (Colville Tribes) identified the need for collecting baseline census data on the timing and abundance of adult salmonids in the Okanogan River Basin in order to determine basin and tributary-specific spawner distributions, evaluate the status and trends of natural salmonid production in the basin, document local fish populations, and augment existing fishery data. This report documents the design, installation, operation and evaluation of mainstem and tributary video systems in the Okanogan River Basin. The species-specific data collected by these fish enumeration systems are presented along with an evaluation of the operation of a facility that provides a count of fish using an automated method. Information collected by the Colville Tribes Fish & Wildlife Department, specifically the Okanogan Basin Monitoring and Evaluation Program (OBMEP), is intended to provide a relative abundance indicator for anadromous fish runs migrating past Zosel Dam and is not intended as an absolute census count. Okanogan Basin Monitoring and Evaluation Program collected fish passage data between October 2005 and December 2006. Video counting stations were deployed and data were collected at two locations in the basin: on the mainstem Okanogan River at Zosel Dam near Oroville, Washington, and on Bonaparte …
Date: June 1, 2007
Creator: Johnson, Peter N.; Rayton, Michael D.; Nass, Bryan L. & Arterburn, John E.
System: The UNT Digital Library
Bringing large-scale multiple genome analysis one step closer: ScalaBLAST and beyond (open access)

Bringing large-scale multiple genome analysis one step closer: ScalaBLAST and beyond

Genome sequence comparisons of exponentially growing data sets form the foundation for the comparative analysis tools provided by community biological data resources such as the Integrated Microbial Genome (IMG) system at the Joint Genome Institute (JGI). We present an example of how ScalaBLAST, a high-throughput sequence analysis program harnesses increasingly critical high-performance computing to perform sequence analysis which is a critical component of maintaining a state-of-the-art sequence data repository. The Integrated Microbial Genomes (IMG) system1 is a data management and analysis platform for microbial genomes hosted at the JGI. IMG contains both draft and complete JGI genomes integrated with other publicly available microbial genomes of all three domains of life. IMG provides tools and viewers for interactive analysis of genomes, genes and functions, individually or in a comparative context. Most of these tools are based on pre-computed pairwise sequence similarities involving millions of genes. These computations are becoming prohibitively time consuming with the rapid increase in the number of newly sequenced genomes incorporated into IMG and the need to refresh regularly the content of IMG in order to reflect changes in the annotations of existing genomes. Thus, building IMG 2.0 (released on December 1st 2006) entailed reloading from NCBI's RefSeq …
Date: June 1, 2007
Creator: Oehmen, Christopher S.; Sofia, Heidi J.; Baxter, Douglas; Szeto, Ernest; Hugenholtz, Philip; Kyrpides, Nikos et al.
System: The UNT Digital Library