The following report contributes to our knowledge of how to economically produce wildlife-friendly grass mixtures for future fuel feedstocks in the northern plains. It investigates northern-adapted cultivars; management and harvest regimes that are good for yields, soils and wildlife; comparative analysis of monocultures and simple mixtures of native grasses; economic implications of growing grasses for fuel feedstocks in specific locations in the northern plains; and conversion options for turning the grasses into useful chemicals and fuels. The core results of this study suggest the following:  Native grasses, even simple grass mixtures, can be produced profitably in the northern plains as far west as the 100th meridian with yields ranging from 2 to 6 tons per acre.  Northern adapted cultivars may yield less in good years, but have much greater long-term sustainable yield potential than higher-yielding southern varieties.  Grasses require very little inputs and stop economically responding to N applications above 56kg/hectare.  Harvesting after a killing frost may reduce the yield available in that given year but will increase overall yields averaged throughout multiple years.  Harvesting after a killing frost or even in early spring reduces the level of ash and undesirable molecules like K which …

Coordinated sliding of microtubule doublets, driven by dynein motors, produces periodic beating of the axoneme. Recent structural studies of the axoneme have used cryo-electron tomography to reveal new details of the interactions among some of the multitude of proteins that form the axoneme and regulate its movement. Connections among the several sets of dyneins, in particular, suggest ways in which their actions may be coordinated. Study of the molecular architecture of isolated doublets has provided a structural basis for understanding the doublet's mechanical properties that are related to the bending of the axoneme, and has also offered insight into its potential role in the mechanism of dynein activity regulation.

The fast beam-ion instability and the single bunch electron-cloud instability are substantially nonlinear phenomena and can be analyzed in a similar way. The initial exponential growth of the amplitudes known for both instabilities takes place only in the linear approximation. Later, in the nonlinear regime, amplitudes grow according to a power law or even decrease. We analyze the nonlinear regime describing the growth of amplitudes in time and along the train of bunches. Analytic analysis is compared with simulations.

Semantic Web applications require robust and accurate annotation tools that are capable of automating the assignment of ontological classes to words in naturally occurring text (ontological annotation). Most current ontologies do not include rich lexical databases and are therefore not easily integrated with word sense disambiguation algorithms that are needed to automate ontological annotation. WordNet provides a potentially ideal solution to this problem as it offers a highly structured lexical conceptual representation that has been extensively used to develop word sense disambiguation algorithms. However, WordNet has not been designed as an ontology, and while it can be easily turned into one, the result of doing this would present users with serious practical limitations due to the great number of concepts (synonym sets) it contains. Moreover, mapping WordNet to an existing ontology may be difficult and requires substantial labor. We propose to overcome these limitations by developing an analytical platform that (1) provides a WordNet-based ontology offering a manageable and yet comprehensive set of concept classes, (2) leverages the lexical richness of WordNet to give an extensive characterization of concept class in terms of lexical instances, and (3) integrates a class recognition algorithm that automates the assignment of concept classes to …

We present constraints on the mean matter density, {Omega}{sub m}, dark energy density, {Omega}{sub DE}, and the dark energy equation of state parameter, w, using Chandra measurements of the X-ray gas mass fraction (fgas) in 42 hot (kT > 5keV), X-ray luminous, dynamically relaxed galaxy clusters spanning the redshift range 0.05 < z < 1.1. Using only the fgas data for the 6 lowest redshift clusters at z < 0.15, for which dark energy has a negligible effect on the measurements, we measure {Omega}{sub m}=0.28{+-}0.06 (68% confidence, using standard priors on the Hubble Constant, H{sub 0}, and mean baryon density, {Omega}{sub b}h{sup 2}). Analyzing the data for all 42 clusters, employing only weak priors on H{sub 0} and {Omega}{sub b}h{sup 2}, we obtain a similar result on {Omega}{sub m} and detect the effects of dark energy on the distances to the clusters at {approx}99.99% confidence, with {Omega}{sub DE}=0.86{+-}0.21 for a non-flat LCDM model. The detection of dark energy is comparable in significance to recent SNIa studies and represents strong, independent evidence for cosmic acceleration. Systematic scatter remains undetected in the f{sub gas} data, despite a weighted mean statistical scatter in the distance measurements of only {approx}5%. For a flat cosmology …

Most of optical gravitational lenses recently discovered in the Sloan Digital Sky Survey Quasar Lens Search (SQLS) have two-images rather than four images, in marked contrast to radio lenses for which the fraction of four-image lenses (quad fraction) is quite high. We revisit the quad fraction among optical lenses by taking the selection function of the SQLS into account. We find that the current observed quad fraction in the SQLS is indeed lower than, but consistent with, the prediction of our theoretical model. The low quad fraction among optical lenses, together with the high quad fraction among radio lenses, implies that the quasar optical luminosity function has a relatively shallow faint end slope.

We have developed a new, comprehensive set of simulation tools aimed at modeling the interaction of intense ion beams and electron clouds (e-clouds). The set contains the 3-D accelerator PIC code WARP and the 2-D ''slice'' e-cloud code POSINST [M. Furman, this workshop, paper TUAX05], as well as a merger of the two, augmented by new modules for impact ionization and neutral gas generation. The new capability runs on workstations or parallel supercomputers and contains advanced features such as mesh refinement, disparate adaptive time stepping, and a new ''drift-Lorentz'' particle mover for tracking charged particles in magnetic fields using large time steps. It is being applied to the modeling of ion beams (1 MeV, 180 mA, K+) for heavy ion inertial fusion and warm dense matter studies, as they interact with electron clouds in the High-Current Experiment (HCX) [experimental results discussed by A. Molvik, this workshop, paper THAW02]. We describe the capabilities and present recent simulation results with detailed comparisons against the HCX experiment, as well as their application (in a different regime) to the modeling of e-clouds in the Large Hadron Collider (LHC).

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Monosodium titanate (MST) is an inorganic sorbent/ion exchanger developed for the removal of radionuclides from nuclear wastes. We investigated the ability of MST to bind Cd(II), Hg(II), or Au(III) to establish the utility of MST for applications in environmental decontamination or medical therapy (drug delivery). Adsorption isotherms for MST were determined at pH 7-7.5 in water or phosphate-buffered saline. The extent of metal binding was determined spectroscopically by measuring the concentrations of the metals in solution before and after contact with the MST. Cytotoxic responses to MST were assessed using THP1 monocytes and succinate dehydrogenase activity. Monocytic activation by MST was assessed by TNF{alpha} secretion (ELISA) with or without lipopolysaccharide (LPS) activation. MST sorbed Cd(II), Hg(II), and Au(III) under conditions similar to that in physiological systems. MST exhibited the highest affinity for Cd(II) followed by Hg(II) and Au (III). MST (up to 100 mg/L) exhibited only minor (< 25% suppression of succinate dehydrogenase) cytotoxicity and did not trigger TNF{alpha} secretion nor modulate LPS-induced TNF{alpha} secretion from monocytes. MST exhibits high affinity for biometals with no significant biological liabilities in these introductory studies. MST deserves further scrutiny as a substance with the capacity to decontaminate biological environments or deliver metals in …

A computational study was performed to better understand the differences between human arylamine N-acetyltransferase (NAT) 1 and 2. Homology models were constructed from available crystal structures and comparisons of the active site residues 125, 127, and 129 for these two enzymes provide insight into observed substrate differences. The NAT2 model provided a basis for understanding how some of the common mutations may affect the structure of the protein. Molecular dynamics simulations of the human NAT models and the template structure (NAT from Mycobacterium smegmatis) were performed and showed the models to be stable and reasonable. Docking studies of hydroxylated heterocyclic amines in the models of NAT1 and NAT2 probed the differences exhibited by these two proteins with mutagenic agents. The hydroxylated heterocyclic amines were only able to fit into the NAT2 active site, and an alternative binding site by the P-loop was found using our models and will be discussed. Additionally, quantum mechanical calculations were performed to study the O-acetylation reaction of the hydroxylated heterocyclic amines N-OH MeIQx and N-OH PhIP. This study has given us insight into why there are substrate differences among isoenzymes and explains some of the polymorphic activity differences.

Guiding of relativistically intense laser beams in preformed plasma channels is discussed for development of GeV-class laser accelerators. Experiments using a channel guided laser wakefield accelerator (LWFA) at LBNL have demonstrated that near mono-energetic 100 MeV-class electron beams can be produced with a 10 TW laser system. Analysis, aided by particle-in-cell simulations, as well as experiments with various plasma lengths and densities, indicate that tailoring the length of the accelerator, together with loading of the accelerating structure with beam, is the key to production of mono-energetic electron beams. Increasing the energy towards a GeV and beyond will require reducing the plasma density and design criteria are discussed for an optimized accelerator module. The current progress and future directions are summarized through comparison with conventional accelerators, highlighting the unique short term prospects for intense radiation sources based on laser-driven plasma accelerators.

In this volume (III), all P-wave measurements are presented that were performed in Borehole C4997 at the Waste Treatment Plant (WTP) with T-Rex as the seismic source and the Lawrence Berkeley National Laboratory (LBNL) 3-D wireline geophone as the at-depth borehole receiver. P-wave measurements were performed over the depth range of 390 to 1220 ft, typically in 10-ft intervals. However, in some interbeds, 5-ft depth intervals were used. Compression (P) waves were generated by moving the base plate of T-Rex for a given number of cycles at a fixed frequency as discussed in Section 2. This process was repeated so that signal averaging in the time domain was performed using 3 to about 15 averages, with 5 averages typically used. In addition to the LBNL 3-D geophone, called the lower receiver herein, a 3-D geophone from Redpath Geophysics was fixed at a depth of 40 ft (later relocated to 27.5 ft due to visibility in borehole after rain) in Borehole C4997, and a 3-D geophone from the University of Texas was embedded near the borehole at about 1.5 ft below the ground surface. This volume is organized into 12 sections as follows: Section 1: Introduction, Section 2: Explanation of Terminology, …

Tc contamination is found within the DOE complex at those sites whose mission involved extraction of plutonium from irradiated uranium fuel or isotopic enrichment of uranium. At the Hanford Site, chemical separations and extraction processes generated large amounts of high level and transuranic wastes that are currently stored in underground tanks. The waste from these extraction processes is currently stored in underground High Level Waste (HLW) tanks. However, the chemistry of the HLW in any given tank is greatly complicated by repeated efforts to reduce volume and recover isotopes. These processes ultimately resulted in mixing of waste streams from different processes. As a result, the chemistry and the fate of Tc in HLW tanks are not well understood. This lack of understanding has been made evident in the failed efforts to leach Tc from sludge and to remove Tc from supernatants prior to immobilization. Although recent interest in Tc chemistry has shifted from pretreatment chemistry to waste residuals, both needs are served by a fundamental understanding of Tc chemistry.

The containment vessels for the Model 9975 radioactive material shipping packaging employ a cone-seal closure. The possibility of a metal-to-metal seal forming between the mating conical surfaces, independent of the elastomer seals, has been raised. It was postulated that such an occurrence would compromise the containment vessel hydrostatic and leakage tests. The possibility of formation of such a seal has been investigated by testing and by structural and statistical analyses. The results of the testing and the statistical analysis demonstrate and procedural changes ensure that hydrostatic proof and annual leakage testing can be accomplished to the appropriate standards.

We present a combined measurement of the Cabibbo-Kobayashi-Maskawa matrix element |V{sub cb}| and of the parameters {rho}{sup 2}, R{sub 1}(1), and R{sub 2}(1), which fully characterize the form factors for the B{sup 0} {yields} D*-{ell}+?{sub {ell}} decay in the framework of HQET. The results, based on a selected sample of about 52,800 B{sup 0} {yields} D*-{ell}+?{sub {ell}} decays, recorded by the BABAR detector, are {rho}{sup 2} = 1.156 {+-} 0.094 {+-} 0.028, R{sub 1}(1) = 1.329{+-}0.131{+-}0.044, R{sub 2}(1) = 0.859{+-}0.077{+-}0.022, and F(1)|V{sub cb}| = (35.0{+-}0.4{+-}1.1)x10-3. The first error is the statistical and the second is the systematic uncertainty. Combining these measurements with the previous BABAR measurement of the form factors, which employs a different ?t technique on a partial sample of the data, we improve the statistical precision of the result, {rho}{sup 2} = 1.179 {+-} 0.048 {+-} 0.028,R{sub 1}(1) = 1.417 {+-} 0.061 {+-} 0.044,R{sub 2}(1) = 0.836 {+-} 0.037 {+-} 0.022, and F(1)|V{sub cb}| = (34.7 {+-} 0.3 {+-} 1.1) x 10-3. Using lattice calculations for the axial form factor F(1), we extract |V{sub cb}| = (37.7{+-}0.3{+-}1.2{+-}{sup 1.2}{sub 1.4})x10{sup -3}, where the third error is due to the uncertainty in F(1). We also present a measurement of the …

Velocity measurements in shallow sediments from ground surface to approximately 370 to 400 feet bgs were collected by Redpath Geophysics using impulsive S- and P-wave seismic sources (Redpath 2007). Measurements below this depth within basalt and sedimentary interbeds were made by UTA between October and December 2006 using the T-Rex vibratory seismic source in each of the three boreholes. Results of these measurements including seismic records, wave-arrival identifications and interpreted velocity profiles are presented in the following six volumes: I. P-Wave Measurements in Borehole C4993 II. P-Wave Measurements in Borehole C4996 III. P-Wave Measurements in Borehole C4997 IV. S-Wave Measurements in Borehole C4993 V. S-Wave Measurements in Borehole C4996 VI. S-Wave Measurements in Borehole C4997 In this volume (VI), all S-wave measurements are presented that were performed in Borehole C4997 at the WTP with T-Rex as the seismic source and the Lawrence Berkeley National Laboratory (LBNL) 3-D wireline geophone as the at-depth borehole receiver.

Toroidally-asymmetric biasing of the divertor plate may increase convective cross-field transport in SOL and thereby reduce the divertor heat load. Experiments performed with the MAST spherical tokamak generally agree with a simple theory of non-axisymmetric biasing. However, some of the experimental results have not yet received a theoretical explanation. In particular, existing theory seems to overestimate the asymmetry between the positive and the negative biasing. Also lacking a theoretical explanation is experimentally observed increase of the average floating potential in the main SOL in the presence of biasing. In this paper we attempt to solve these problems by accounting for the closing of the currents (driven by the biasing) in a strong-shear region near the X-point. We come up with the picture which, at least qualitatively, agrees with these experimental results.

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We present and employ a new kinematical approach to cosmological ''dark energy'' studies. We construct models in terms of the dimensionless second and third derivatives of the scale factor a(t) with respect to cosmic time t, namely the present-day value of the deceleration parameter q{sub 0} and the cosmic jerk parameter, j(t). An elegant feature of this parameterization is that all {Lambda}CDM models have j(t) = 1 (constant), which facilitates simple tests for departures from the {Lambda}CDM paradigm. Applying our model to the three best available sets of redshift-independent distance measurements, from type Ia supernovae and X-ray cluster gas mass fraction measurements, we obtain clear statistical evidence for a late time transition from a decelerating to an accelerating phase. For a flat model with constant jerk, j(t) = j, we measure q{sub 0} = -0.81 {+-} 0.14 and j = 2.16{sub -0.75}{sup +0.81}, results that are consistent with {Lambda}CDM at about the 1{sigma} confidence level. A standard ''dynamical'' analysis of the same data, employing the Friedmann equations and modeling the dark energy as a fluid with an equation of state parameter, w (constant), gives {Omega}{sub m} = 0.306{sub -0.040}{sup +0.042} and w = -1.15{sub -0.18}{sup +0.14}, also consistent with {Lambda}CDM …

Reliable estimates of the seismic source spectrum are necessary for accurate magnitude, yield, and energy estimation. In particular, how seismic radiated energy scales with increasing earthquake size has been the focus of recent debate within the community and has direct implications on earthquake source physics studies as well as hazard mitigation. The 1-D coda methodology of Mayeda et al. has provided the lowest variance estimate of the source spectrum when compared against traditional approaches that use direct S-waves, thus making it ideal for networks that have sparse station distribution. The 1-D coda methodology has been mostly confined to regions of approximately uniform complexity. For larger, more geophysically complicated regions, 2-D path corrections may be required. The complicated tectonics of the northern California region coupled with high quality broadband seismic data provides for an ideal ''apples-to-apples'' test of 1-D and 2-D path assumptions on direct waves and their coda. Using the same station and event distribution, we compared 1-D and 2-D path corrections and observed the following results: (1) 1-D coda results reduced the amplitude variance relative to direct S-waves by roughly a factor of 8 (800%); (2) Applying a 2-D correction to the coda resulted in up to 40% variance …

We find that there is no supersymmetric flavor/CP problem, {mu}-problem, cosmological moduli/gravitino problem or dimension four/five proton decay problem in a class of supersymmetric theories with O(1) GeV gravitino mass. The cosmic abundance of the nonthermally produced gravitinos naturally explains the dark matter component of the universe. A mild hierarchy between the mass scale of supersymmetric particles and electroweak scale is predicted, consistent with the null result of a search for the Higgs boson at the LEP-II experiments. A relation to the strong CP problem is addressed. We propose a parametrization of the model for the purpose of collider studies. The scalar tau lepton is the next to lightest supersymmetric particle in a theoretically favored region of the parameter space. The lifetime of the scalar tau is of O(1000) seconds with which it is regarded as a charged stable particle in collider experiments. We discuss characteristic signatures and a strategy for confirmation of this class of theories at the LHC experiments.

Over the past few years, there has been a lot of progress in the areas of charm and charmonium spectroscopy, in large part due to the very large data samples being accumulated at the e{sup +}e{sup -} B-Factories. In this presentation I will focus on results in three areas: the X/Y/Z charmonium-candidate states, the D{sub sJ} charmed-strange mesons, and newly-discovered charmed baryons. Note the absence of a section on pentaquarks: all B-Factory searches for pentaquarks, charmed or otherwise, have not yielded any observation of such states.

Velocity measurements in shallow sediments from ground surface to approximately 370 to 400 feet bgs were collected by Redpath Geophysics using impulsive S- and P-wave seismic sources (Redpath 2007). Measurements below this depth within basalt and sedimentary interbeds were made by UTA between October and December 2006 using the T-Rex vibratory seismic source in each of the three boreholes. Results of these measurements including seismic records, wave-arrival identifications and interpreted velocity profiles are presented in the following six volumes: I. P-Wave Measurements in Borehole C4993 II. P-Wave Measurements in Borehole C4996 III. P-Wave Measurements in Borehole C4997 IV. S-Wave Measurements in Borehole C4993 V. S-Wave Measurements in Borehole C4996 VI. S-Wave Measurements in Borehole C4997 In this volume (V), all S-wave measurements are presented that were performed in Borehole C4996 at the WTP with T-Rex as the seismic source and the Lawrence Berkeley National Laboratory (LBNL) 3-D wireline geophone as the at-depth borehole receiver.

Human thymocyte nuclear protein 1 (hTHYN1) contains a unique DUF55 domain of 167 residues (55-221), but its cellular function is unclear. Crystals of DUF55 belong to the trigonal space group P3{sub 1}, but twinning causes the data to approach an apparent 622 symmetry. Two datasets to 2.3 {angstrom} resolution were collected. Statistical analysis confirmed that both datasets were partially twinned by tetartohedry. Tetartohedral twin fractions were estimated. After the structure was determined, only one twofold axis of rotational pseudosymmetry was found in the crystal structure. Using the DALI program, a YTH domain, which is a potential RNA binding domain from human YTH domain-containing protein 2, was identified to have the most similar three-dimensional fold to DUF55. It is implied that DUF55 might be a potential RNA-related domain.