Modelica is an object-oriented acausal modeling language that is well positioned to become a de-facto standard for expressing models of complex physical systems. To simulate a model expressed in Modelica, it needs to be translated into executable code. For generating run-time efficient code, such a translation needs to employ algebraic formula manipulations. As the SPARK solver has been shown to be competitive for generating such code but currently cannot be used with the Modelica language, we report in this paper how SPARK's symbolic and numerical algorithms can be implemented in OpenModelica, an open-source implementation of a Modelica modeling and simulation environment. We also report benchmark results that show that for our air flow network simulation benchmark, the SPARK solver is competitive with Dymola, which is believed to provide the best solver for Modelica.

The Superconducting Magnet group at Lawrence Berkeley National Laboratory has been developing Nb{sub 3}Sn high-field accelerator magnet technology for the last fifteen years. In order to support the magnet R&D effort, we are developing a diagnostic system that can help identify the causes of performance limiting quenches by recording small flux-changes within the magnet prior to quench-onset. These analysis techniques were applied to the test results from recent Nb{sub 3}Sn magnets. This paper will examine various types of events and their distinguishing characteristics. The present measurement techniques are discussed along with the design of a new data acquisition system that will substantially improve the quality of the recorded signals.

An integrated laboratory scale, 15 kW high-temperature electrolysis facility has been developed at the Idaho National Laboratory under the U.S. Department of Energy Nuclear Hydrogen Initiative. Initial operation of this facility resulted in over 400 hours of operation with an average hydrogen production rate of approximately 0.9 Nm3/hr. The integrated laboratory scale facility is designed to address larger-scale issues such as thermal management (feed-stock heating, high-temperature gas handling), multiple-stack hot-zone design, multiple-stack electrical configurations, and other “integral” issues. This paper documents the initial operation of the ILS, with experimental details about heat-up, initial stack performance, as well as long-term operation and stack degradation.

Computational science research components were vital parts of the SciDAC-1 accelerator project and are continuing to play a critical role in newly-funded SciDAC-2 accelerator project, the Community Petascale Project for Accelerator Science and Simulation (ComPASS). Recent advances and achievements in the area of computational science research in support of petascale electromagnetic modeling for accelerator design analysis are presented, which include shape determination of superconducting RF cavities, mesh-based multilevel preconditioner in solving highly-indefinite linear systems, moving window using h- or p- refinement for time-domain short-range wakefield calculations, and improved scalable application I/O.

The authors present Sigma, a Web-rich application which provides user-friendly access in processing and plotting of the evaluated and experimental nuclear reaction data stored in the ENDF-6 and EXFOR formats. The main interface includes browsing using a periodic table and a directory tree, basic and advanced search capabilities, interactive plots of cross sections, angular distributions and spectra, comparisons between evaluated and experimental data, computations between different cross section sets. Interactive energy-angle, neutron cross section uncertainties plots and visualization of covariance matrices are under development. Sigma is publicly available at the National Nuclear Data Center website at www.nndc.bnl.gov/sigma.

The bunch compressor of the A0 Photoinjector at Fermilab was removed this past spring to install a transverse to longitudinal emittance exchange experiment. Prior to its removal questions arose about the possibility of observing the effects of Coherent Synchrotron Radiation on the compressed beam. The energy spread of the beam with and without compression was measured to observe any changes. Various beam charges were used to look for square law effects associated with CSR. No direct observation of CSR in the compressor was attempted because the design of the vacuum chamber did not allow it. In this paper we report the results of these experiments and comparison with simulations using ASTRA and CSRTrack. The results are also compared with analytical approximations.

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We determine the second-order correction to the gain function of the microbunching instability in single-pass systems of interest for the next generation of light sources. The calculation applies to the case where the instability is seeded by shot noise. We examine an analytically treatable model of beam dynamics where collective forces are active only in non-dispersive sections of the linac. We find that the second order term can augment the linear gain significantly while affecting the spectrum of the overall gain only marginally. The weight of the second-order correction relative to the linear gain is found to scale quadratically with respect to R56. The qualitative behavior predicted by the model is consistent with exact numerical solutions of the Vlasov equations for realistic lattices.

The authors present selected new results on leptonic B meson decays from the BABAR experiment: searches for the decays B{sup 0} {yields} {ell}{sup +}{ell}{sup -}, B{sup +} {yields} {ell}{sup +}{nu} and B{sup 0} {yields} {ell}{sup +}{tau}{sup -}, and B {yields} K{nu}{bar {nu}}, where {ell} = e or {mu}. They observe no evidence for these decays and set upper limits on their branching fractions.

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Clouds of electrons in the vacuum chambers of accelerators of positively charged particle beams present a serious limitation for operation of these machines at high currents. Because of the size of these accelerators, it is difficult to probe the low energy electrons clouds over substantial lengths of the beam pipe. We applied a novel technique to directly measure the electron cloud density via the phase shift induced in a TE wave which is independently excited and transmitted over a straight section of the accelerator. The modulation in the wave transmission which appears to increase in depth when the clearing solenoids are switched off, seem to be directly correlated to the electron cloud density in the section. Furthermore, we expect a larger phase shift of a wave transmitted through magnetic dipole field regionsif the transmitted wave couples with the gyration motion of the electrons. We have used this technique to measure the average electron cloud density (ECD) specifically for the first time in magnetic field regions of a new 4-dipole chicane in the positron ring of the PEP-II collider at SLAC. In this paper we present and discuss the measurements taken in the Low Energy Ring (LER) between 2006 and 2008.

Recent rate measurements of B{sub s}{sup 0} mesons and {Lambda}{sub b}{sup 0} baryons produced in {radical}s = 1.96 TeV proton-antiproton and {Upsilon}(5S) electron-positron collisions are reviewed, including the first observations of six new decay modes: B{sub s}{sup 0} {yields} D{sub s}{sup +} K{sup -} (CDF), B{sub s}{sup 0} {yields} D{sub s}{sup -} D{sub s}{sup +} (CDF), B{sub s}{sup 0} {yields} D{sub s1}{sup -}(2536){mu}{sup +} {nu}{sub {mu}} X (DZero), B{sub s}{sup 0} {yields} {phi}{gamma} (Belle)< {Lambda}{sub b}{sup 0} {yields} p{pi}{sup -} (CDF), and {Lambda}{sub b}{sup 0} {yields} pK{sup -} (CDF). Also examined are branching-fraction measurements or limits for the B{sub s}{sup 0} {yields} D{sub s}{sup (*)} D{sub s}{sup (*)} modes (Belle, CDF, and DZero), the B{sub s}{sup 0} {yields} {gamma}{gamma} radiative penguin decay (Belle), and three two-body charmless B{sub s}{sup 0} meson decay channels (CDF). Implications for the phenomenology of electroweak and QCD physics, as well as searches for physics beyond the Standard Model, are identified where applicable.

Understanding the cognitive and behavioral consequences of brain exposures to low-dose ionizing radiation has broad relevance for health risks from medical radiation diagnostic procedures, radiotherapy, environmental nuclear contamination, as well as earth orbit and space missions. Analyses of transcriptome profiles of murine brain tissue after whole-body radiation showed that low-dose exposures (10 cGy) induced genes not affected by high dose (2 Gy), and low-dose genes were associated with unique pathways and functions. The low-dose response had two major components: pathways that are consistently seen across tissues, and pathways that were brain tissue specific. Low-dose genes clustered into a saturated network (p < 10{sup -53}) containing mostly down-regulated genes involving ion channels, long-term potentiation and depression, vascular damage, etc. We identified 9 neural signaling pathways that showed a high degree of concordance in their transcriptional response in mouse brain tissue after low-dose radiation, in the aging human brain (unirradiated), and in brain tissue from patients with Alzheimer's disease. Mice exposed to high-dose radiation did not show these effects and associations. Our findings indicate that the molecular response of the mouse brain within a few hours after low-dose irradiation involves the down-regulation of neural pathways associated with cognitive dysfunctions that are also …

In an exchange of technology agreement, Fermilab built and will deliver a 3.9 GHz (3rd harmonic) cryomodule to DESY to be installed in the TTF/FLASH beamline. This cryomodule delivery will involve a combination of flatbed air ride truck and commercial aircraft transport to Hamburg Germany. A description of the isolation and damping systems that maintain alignment during transport and protect fragile components is provided. Initially, transport and corresponding alignment stability studies were performed in order to assess the risk associated with transatlantic travel of a fully assembled cryomodule. Shock loads were applied to the cryomodule by using a coldmass mockup to prevent subjecting actual critical components (such as the cavities and input couplers) to excessive forces. Accumulative and peak shock loads were applied through over-the-road testing and using a pendulum hammer apparatus, respectively. Finite Element Analysis (FEA) studies were implemented to define location of instrumentation for transport studies and provide modal frequencies and shapes. Shock and vibration measurement results of transport studies and stabilization techniques are discussed.

{sup 13}C-based metabolic flux analysis provides valuable information about bacterial physiology. Though many biological processes rely on the synergistic functions of microbial communities, study of individual organisms in a mixed culture using existing flux analysis methods is difficult. Isotopomer-based flux analysis typically relies on hydrolyzed amino acids from a homogeneous biomass. Thus metabolic flux analysis of a given organism in a mixed culture requires its separation from the mixed culture. Swift and efficient cell separation is difficult and a major hurdle for isotopomer-based flux analysis of mixed cultures. Here we demonstrate the use of a single highly-expressed protein to analyze the isotopomer distribution of amino acids from one organism. Using the model organism E. coli expressing a plasmid-borne, his-tagged Green Fluorescent Protein (GFP), we show that induction of GFP does not affect E. coli growth kinetics or the isotopomer distribution in nine key metabolites. Further, the isotopomer labeling patterns of amino acids derived from purified GFP and total cell protein are indistinguishable, indicating that amino acids from a purified protein can be used to infer metabolic fluxes of targeted organisms in a mixed culture. This study provides the foundation to extend isotopomer-based flux analysis to study metabolism of individual strains …

N2-(4-Hydroxyphenyl)-2'-deoxyguanosine-5'-O-DMT-3'-phosphoramidite has been synthesized and used to incorporate the N2-(4-hydroxyphenyl)-2'-dG (N2-4-HOPh-dG) into DNA, using solid-state synthesis technology. The key step to obtaining the xenonucleoside is a palladium (Xantphos-chelated) catalyzed N2-arylation (Buchwald-Hartwig reaction) of a fully protected 2'-deoxyguanosine derivative by 4-isobutyryloxybromobenzene. The reaction proceeded in good yield and the adduct was converted to the required 5'-O-DMT-3'-O-phosphoramidite by standard methods. The latter was used to synthesize oligodeoxynucleotides in which the N2-4-HOPh-dG adduct was incorporated site-specifically. The oligomers were purified by reverse-phase HPLC. Enzymatic hydrolysis and HPLC analysis confirmed the presence of this adduct in the oligomers.

Laser ion source (LIS) produces ions by irradiating pulsed high power laser shots onto the solid state target. For the low charge state ion production, laser spot diameter on the target can be over several millimeters using a high power laser such as Nd:YAG laser. In this case, a damage to the target surface is small while there is a visible crater in case of the best focused laser shot for high charge state ion production (laser spot diameter can be several tens of micrometers). So the need of target displacement after each laser shot to use fresh surface to stabilize plasma is not required for low charge state ion production. We tested target lifetime using Nd:YAG laser with 5 Hz repetition rate. Also target temperature and vacuum condition were recorded during experiment. The feasibility of a long time operation was verified.

Rapid expansion of wind power in the electricity sector is raising questions about how wind resource variability might affect the capacity value of wind farms at high levels of penetration. Electricity storage, with the capability to shift wind energy from periods of low demand to peak times and to smooth fluctuations in output, may have a role in bolstering the value of wind power at levels of penetration envisioned by a new Department of Energy report ('20% Wind by 2030, Increasing Wind Energy's Contribution to U.S. Electricity Supply'). This paper quantifies the value storage can add to wind. The analysis was done employing the Regional Energy Deployment System (ReEDS) model, formerly known as the Wind Deployment System (WinDS) model. ReEDS was used to estimate the cost and development path associated with 20% penetration of wind in the report. ReEDS differs from the WinDS model primarily in that the model has been modified to include the capability to build and use three storage technologies: pumped-hydroelectric storage (PHS), compressed-air energy storage (CAES), and batteries. To assess the value of these storage technologies, two pairs of scenarios were run: business-as-usual, with and without storage; 20% wind energy by 2030, with and without storage. …

During normal operations at the Department of Energy's Hanford Site in Hanford, WA, drugstore beetles, (Stegobium paniceum (L.) Coleoptera: Anobiidae), were found within the fiberboard subassemblies of two 9975 Shipping Packages. Initial indications were that the beetles were feeding on the Celotex{trademark} assemblies within the package. Celotex{trademark} fiberboard is used in numerous radioactive material packages serving as both a thermal insulator and an impact absorber for both normal conditions of transport and hypothetical accident conditions. The Department of Energy's Packaging Certification Program (EM-63) directed a thorough investigation to determine if the drugstore beetles were causing damage that would be detrimental to the safety performance of the Celotex{trademark}. The Savannah River National Laboratory is conducting the investigation with entomological expertise provided by Clemson University. The two empty 9975 shipping packages were transferred to the Savannah River National Laboratory in the fall of 2007. This paper will provide details and results of the ongoing investigation.

The candidate division Korarchaeota comprises a group of uncultivated microorganisms that, by their small subunit rRNA phylogeny, may have diverged early from the major archaeal phyla Crenarchaeota and Euryarchaeota. Here, we report the initial characterization of a member of the Korarchaeota with the proposed name,"Candidatus Korarchaeum cryptofilum," which exhibits an ultrathin filamentous morphology. To investigate possible ancestral relationships between deep-branching Korarchaeota and other phyla, we used whole-genome shotgun sequencing to construct a complete composite korarchaeal genome from enriched cells. The genome was assembled into a single contig 1.59 Mb in length with a G + C content of 49percent. Of the 1,617 predicted protein-coding genes, 1,382 (85percent) could be assigned to a revised set of archaeal Clusters of Orthologous Groups (COGs). The predicted gene functions suggest that the organism relies on a simple mode of peptide fermentation for carbon and energy and lacks the ability to synthesize de novo purines, CoA, and several other cofactors. Phylogenetic analyses based on conserved single genes and concatenated protein sequences positioned the korarchaeote as a deep archaeal lineage with an apparent affinity to the Crenarchaeota. However, the predicted gene content revealed that several conserved cellular systems, such as cell division, DNA replication, and tRNA …

As part of a program to characterize and baseline selected environmental parameters in the region around the proposed repository at Yucca Mountain, Nevada, ambient radon-222 monitoring was conducted in the rural community of Amargosa Valley, the community closest to the proposed repository site. Passive integrating radon monitors and a continuous radon monitoring instrument were deployed adjacent to the Community Environmental Monitoring Program (CEMP) (http://www.cemp.dri.edu/index.html) station located in the Amargosa Valley Community Center near the library. The CEMP station provided real-time ambient gamma exposure and meteorological data used to correct the integrated radon measurements as well as verify meteorological data collected by the continuous radon monitoring instrument. Additionally, different types of environmental enclosures that housed the monitors and instrument were used to determine if particular designs influenced the ambient radon measurements.

To compensate the effects from the head-on beam-beam interactions in the polarized proton operation in the Relativistic Heavy Ion Collider (RHIC), an electron lens (elens) is proposed to collide head-on with the proton beam. We used an extended version of SixTrack for multiparticle beam-beam simulation in order to study the effect of the e-lens on the stochastic boundary and also on diffusion. The stochastic boundary was analyzed using Lyapunov exponents and the diffusion was characterized as the increase in the rms spread of the action. For both studies the simulations were performed with and without the e-lens and with full and partial compensation. Using the simulated values of the diffusion an attempt to calculate the emittance growth rate is presented.

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High brilliance in the 3GeV new light source NSLS II is obtained from the high magnetic fields in insertion devices (ID). The beam lifetime is limited to 3h by single Coulomb scattering in the Bunch (Touschek effect). This effect occurs everywhere around the circumference and there is unavoidable beam loss in the adjacent low aperture insertion devices. This raises the issue of degradation and damage of the permanent magnetic material by irradiation with high energy electrons and corresponding shower particles. It is expected that IDs, especially those in-vacuum, would experience changes resulting from exposure to gamma rays, x-rays, electrons and neutrons. By expanding an on-going material radiation damage study at BNL the demagnetization effect of irradiation consisting primarily of neutrons, gamma rays and electrons on a set of NdFeB magnets is studied. Integrated doses ranging from several Mrad to a few Grad were achieved at the BNL Isotope Facility with a 112 MeV, 90 {micro}A proton beam. Detailed information on dose distributions as well as on particle energy spectra on the NdFeB magnets was obtained in realistic simulations with the MARS15 Monte-Carlo code. This paper summarizes the results of this study.