Evaluation of Simple Causal Message Logging for Large-Scale Fault Tolerant HPC Systems (open access)

Evaluation of Simple Causal Message Logging for Large-Scale Fault Tolerant HPC Systems

The era of petascale computing brought machines with hundreds of thousands of processors. The next generation of exascale supercomputers will make available clusters with millions of processors. In those machines, mean time between failures will range from a few minutes to few tens of minutes, making the crash of a processor the common case, instead of a rarity. Parallel applications running on those large machines will need to simultaneously survive crashes and maintain high productivity. To achieve that, fault tolerance techniques will have to go beyond checkpoint/restart, which requires all processors to roll back in case of a failure. Incorporating some form of message logging will provide a framework where only a subset of processors are rolled back after a crash. In this paper, we discuss why a simple causal message logging protocol seems a promising alternative to provide fault tolerance in large supercomputers. As opposed to pessimistic message logging, it has low latency overhead, especially in collective communication operations. Besides, it saves messages when more than one thread is running per processor. Finally, we demonstrate that a simple causal message logging protocol has a faster recovery and a low performance penalty when compared to checkpoint/restart. Running NAS Parallel Benchmarks …
Date: February 25, 2011
Creator: Bronevetsky, G.; Meneses, E. & Kale, L. V.
Object Type: Article
System: The UNT Digital Library
Cognitive Foundations for Visual Analytics (open access)

Cognitive Foundations for Visual Analytics

In this report, we provide an overview of scientific/technical literature on information visualization and VA. Topics discussed include an update and overview of the extensive literature search conducted for this study, the nature and purpose of the field, major research thrusts, and scientific foundations. We review methodologies for evaluating and measuring the impact of VA technologies as well as taxonomies that have been proposed for various purposes to support the VA community. A cognitive science perspective underlies each of these discussions.
Date: February 25, 2011
Creator: Greitzer, Frank L.; Noonan, Christine F. & Franklin, Lyndsey
Object Type: Report
System: The UNT Digital Library
INVESTIGATION OF CRUSTAL MOTION IN THE TIEN SHAN USING INSAR (open access)

INVESTIGATION OF CRUSTAL MOTION IN THE TIEN SHAN USING INSAR

The northern Tien Shan of Central Asia is an area of active mid-continent deformation. Although far from a plate boundary, this region has experienced 5 earthquakes larger than magnitude 7 in the past century and includes one event that may as be as large as Mw 8.0. Previous studies based on GPS measurements indicate on the order of 23 mm/yr of shortening across the entire Tien Shan and up to 15 mm/year in the northern Tien Shan (Figure 1). The seismic moment release rate appears comparable with the geodetic measured slip, at least to first order, suggesting that geodetic rates can be considered a proxy for accumulation rates of stress for seismic hazard estimation. Interferometric synthetic aperture radar may provide a means to make detailed spatial measurements and hence in identifying block boundaries and assisting in seismic hazard. Therefore, we hoped to define block boundaries by direct measurement and by identifying and resolving earthquake slip. Due to political instability in Kyrgzystan, the existing seismic network has not performed as well as required to precisely determine earthquake hypocenters in remote areas and hence InSAR is highly useful. In this paper we present the result of three earthquake studies and show that …
Date: February 25, 2011
Creator: Mellors, R J
Object Type: Report
System: The UNT Digital Library
Interactions between Energy Efficiency Programs funded under the Recovery Act and Utility Customer-Funded Energy Efficiency Programs (open access)

Interactions between Energy Efficiency Programs funded under the Recovery Act and Utility Customer-Funded Energy Efficiency Programs

Since the spring of 2009, billions of federal dollars have been allocated to state and local governments as grants for energy efficiency and renewable energy projects and programs. The scale of this American Reinvestment and Recovery Act (ARRA) funding, focused on 'shovel-ready' projects to create and retain jobs, is unprecedented. Thousands of newly funded players - cities, counties, states, and tribes - and thousands of programs and projects are entering the existing landscape of energy efficiency programs for the first time or expanding their reach. The nation's experience base with energy efficiency is growing enormously, fed by federal dollars and driven by broader objectives than saving energy alone. State and local officials made countless choices in developing portfolios of ARRA-funded energy efficiency programs and deciding how their programs would relate to existing efficiency programs funded by utility customers. Those choices are worth examining as bellwethers of a future world where there may be multiple program administrators and funding sources in many states. What are the opportunities and challenges of this new environment? What short- and long-term impacts will this large, infusion of funds have on utility customer-funded programs; for example, on infrastructure for delivering energy efficiency services or on customer …
Date: February 25, 2011
Creator: Goldman, Charles A.; Stuart, Elizabeth; Hoffman, Ian; Fuller, Merrian C. & Billingsley, Megan A.
Object Type: Report
System: The UNT Digital Library
NNSA ASC Exascale Environment Planning, Applications Working Group, Report February 2011 (open access)

NNSA ASC Exascale Environment Planning, Applications Working Group, Report February 2011

The scope of the Apps WG covers three areas of interest: Physics and Engineering Models (PEM), multi-physics Integrated Codes (IC), and Verification and Validation (V&V). Each places different demands on the exascale environment. The exascale challenge will be to provide environments that optimize all three. PEM serve as a test bed for both model development and 'best practices' for IC code development, as well as their use as standalone codes to improve scientific understanding. Rapidly achieving reasonable performance for a small team is the key to maintaining PEM innovation. Thus, the environment must provide the ability to develop portable code at a higher level of abstraction, which can then be tuned, as needed. PEM concentrate their computational footprint in one or a few kernels that must perform efficiently. Their comparative simplicity permits extreme optimization, so the environment must provide the ability to exercise significant control over the lower software and hardware levels. IC serve as the underlying software tools employed for most ASC problems of interest. Often coupling dozens of physics models into very large, very complex applications, ICs are usually the product of hundreds of staff-years of development, with lifetimes measured in decades. Thus, emphasis is placed on portability, …
Date: February 25, 2011
Creator: Still, C. H.; Arsenlis, A.; Bond, R. B.; Steinkamp, M. J.; Swaminarayan, S.; Womble, D. E. et al.
Object Type: Report
System: The UNT Digital Library
Optical Basicity and Nepheline Crystallization in High Alumina Glasses (open access)

Optical Basicity and Nepheline Crystallization in High Alumina Glasses

The purpose of this study was to find compositions that increase waste loading of high-alumina wastes beyond what is currently acceptable while avoiding crystallization of nepheline (NaAlSiO4) on slow cooling. Nepheline crystallization has been shown to have a large impact on the chemical durability of high-level waste glasses. It was hypothesized that there would be some composition regions where high-alumina would not result in nepheline crystal production, compositions not currently allowed by the nepheline discriminator. Optical basicity (OB) and the nepheline discriminator (ND) are two ways of describing a given complex glass composition. This report presents the theoretical and experimental basis for these models. They are being studied together in a quadrant system as metrics to explore nepheline crystallization and chemical durability as a function of waste glass composition. These metrics were calculated for glasses with existing data and also for theoretical glasses to explore nepheline formation in Quadrant IV (passes OB metric but fails ND metric), where glasses are presumed to have good chemical durability. Several of these compositions were chosen, and glasses were made to fill poorly represented regions in Quadrant IV. To evaluate nepheline formation and chemical durability of these glasses, quantitative X-ray diffraction (XRD) analysis and …
Date: February 25, 2011
Creator: Rodriguez, Carmen P.; McCloy, John S.; Schweiger, M. J.; Crum, Jarrod V. & Winschell, Abigail E.
Object Type: Report
System: The UNT Digital Library
Pressure-induced changes in the electronic structure of americium metal (open access)

Pressure-induced changes in the electronic structure of americium metal

We have conducted electronic-structure calculations for Am metal under pressure to investigate the behavior of the 5f-electron states. Density-functional theory (DFT) does not reproduce the experimental photoemission spectra for the ground-state phase where the 5f electrons are localized, but the theory is expected to be correct when 5f delocalization occurs under pressure. The DFT prediction is that peak structures of the 5f valence band will merge closer to the Fermi level during compression indicating presence of itinerant 5f electrons. Existence of such 5f bands is argued to be a prerequisite for the phase transitions, particularly to the primitive orthorhombic AmIV phase, but does not agree with modern dynamical-mean-field theory (DMFT) results. Our DFT model further suggests insignificant changes of the 5f valence under pressure in agreement with recent resonant x-ray emission spectroscopy, but in contradiction to the DMFT predictions. The influence of pressure on the 5f valency in the actinides is discussed and is shown to depend in a non-trivial fashion on 5f band position and occupation relative to the spd valence bands.
Date: February 25, 2011
Creator: Soderlind, P; Moore, K T; Landa, A & Bradley, J A
Object Type: Article
System: The UNT Digital Library
LiverTox: Advanced QSAR and Toxicogeomic Software for Hepatotoxicity Prediction (open access)

LiverTox: Advanced QSAR and Toxicogeomic Software for Hepatotoxicity Prediction

YAHSGS LLC and Oak Ridge National Laboratory (ORNL) established a CRADA in an attempt to develop a predictive system using a pre-existing ORNL computational neural network and wavelets format. This was in the interest of addressing national needs for toxicity prediction system to help overcome the significant drain of resources (money and time) being directed toward developing chemical agents for commerce. The research project has been supported through an STTR mechanism and funded by the National Institute of Environmental Health Sciences beginning Phase I in 2004 (CRADA No. ORNL-04-0688) and extending Phase II through 2007 (ORNL NFE-06-00020). To attempt the research objectives and aims outlined under this CRADA, state-of-the-art computational neural network and wavelet methods were used in an effort to design a predictive toxicity system that used two independent areas on which to base the system’s predictions. These two areas were quantitative structure-activity relationships and gene-expression data obtained from microarrays. A third area, using the new Massively Parallel Signature Sequencing (MPSS) technology to assess gene expression, also was attempted but had to be dropped because the company holding the rights to this promising MPSS technology went out of business. A research-scale predictive toxicity database system called Multi-Intelligent System for …
Date: February 25, 2011
Creator: Lu, Po-Yun & Yuracko, Katherine
Object Type: Report
System: The UNT Digital Library
Edge Simulation Laboratory Project Report (open access)

Edge Simulation Laboratory Project Report

None
Date: February 25, 2011
Creator: Cohen, R H; Dorf, M; Dorr, M & Rognlien, T D
Object Type: Report
System: The UNT Digital Library