Strategies and tools for whole genome alignments (open access)

Strategies and tools for whole genome alignments

The availability of the assembled mouse genome makespossible, for the first time, an alignment and comparison of two largevertebrate genomes. We have investigated different strategies ofalignment for the subsequent analysis of conservation of genomes that areeffective for different quality assemblies. These strategies were appliedto the comparison of the working draft of the human genome with the MouseGenome Sequencing Consortium assembly, as well as other intermediatemouse assemblies. Our methods are fast and the resulting alignmentsexhibit a high degree of sensitivity, covering more than 90 percent ofknown coding exons in the human genome. We have obtained such coveragewhile preserving specificity. With a view towards the end user, we havedeveloped a suite of tools and websites for automatically aligning, andsubsequently browsing and working with whole genome comparisons. Wedescribe the use of these tools to identify conserved non-coding regionsbetween the human and mouse genomes, some of which have not beenidentified by other methods.
Date: November 25, 2002
Creator: Couronne, Olivier; Poliakov, Alexander; Bray, Nicolas; Ishkhanov,Tigran; Ryaboy, Dmitriy; Rubin, Edward et al.
System: The UNT Digital Library
Electrochemical NO{sub x} Sensors for Automotive Diesel Exhaust (open access)

Electrochemical NO{sub x} Sensors for Automotive Diesel Exhaust

New emissions regulations will increase the need for compact, inexpensive sensors for monitoring and control of automotive exhaust gas pollutants. Species of interest include hydrocarbons, carbon monoxide, and oxides of nitrogen (NO{sub x}). The current work is directed towards the development of fast, high sensitivity electrochemical NO{sub x} sensors for automotive diesel applications. We have investigated potentiometric NO sensors with good sensitivity and fast response when operated in 10% O{sub 2}. The sensors consist of yttria-stabilized zirconia substrates attached with NiCr{sub 2}O{sub 4} sensing electrodes and Pt reference electrodes. A composite NiCr{sub 2}O{sub 4}:Rh sensing electrode is shown to give significantly faster response than NiCr{sub 2}O{sub 4} alone. The exact role of the Rh in enhancing the response speed is not clear at present. However, the Rh appears to accumulate at the contacts between the NiCr{sub 2}O{sub 4} particles and may enhance the inter-particle electronic conduction. Ongoing testing of these sensors is being performed to elucidate the sensing mechanisms and to quantify cross sensitivity to, for example, NO{sub 2}.
Date: November 25, 2002
Creator: Martin, L. P.; Pham, A. Q. & Glass, R. S.
System: The UNT Digital Library
Status of Safety& Environmental Activities for Inertial Fusion Energy (open access)

Status of Safety& Environmental Activities for Inertial Fusion Energy

Over the past several years, significant progress has been made in the analysis of safety and environmental (S&E) issues for inertial fusion energy (IFE). Detailed safety assessments have been performed for the baseline power plant concepts, as well as for a conceptual target fabrication facility. Safety analysis results are helping to drive the agenda for experiments. A survey of the S&E characteristics--both radiological and chemical--of candidate target materials has been completed. Accident initiating events have been identified and incorporated into master logic diagrams, which will be essential to the detailed safety analyses that will be needed in the future. Studies of aerosol generation and transport will have important safety implications. A Monte Carlo-based uncertainty analysis procedure has been developed for use in neutron activation calculations. Finally, waste management issues are receiving increased attention and are deserving of further discussion.
Date: November 25, 2002
Creator: Latkowski, J. F.; Reyes, S.; Cadwallader, L. C.; Sharpe, J. P.; Marshall, T. D.; Merrill, B. J. et al.
System: The UNT Digital Library