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Multimodal switching of a redox-active macrocycle (open access)

Multimodal switching of a redox-active macrocycle

This article looks at molecules that can exist in multiple states with the possibility of toggling between those states based on different stimuli. They have potential for use in molecular switching or sensing applications. The coupling of two different oxidation states with two different charge-transfer states within one macrocyclic scaffold delivers up to five different optical outputs. This molecular switching manifold exploits intramolecular coupling of multiple redox active substituents within a single molecule.
Date: March 1, 2019
Creator: Payne, Daniel T.; Webre, W. A.; Matsushita, Yoshitaka; Zhu, Nianyong; Futera, Zdeněk; Labuta, J. et al.
Object Type: Article
System: The UNT Digital Library
Electrostatic equilibria of non-neutral plasmas confined in a Penning trap with axially varying magnetic field (open access)

Electrostatic equilibria of non-neutral plasmas confined in a Penning trap with axially varying magnetic field

This article describes a procedure for computing the electrostatic equilibria of non-neutral plasmas in a Penning trap with a nonuniform magnetic field by solving Poisson's equation using an iterative method. Plasma equilibria in a model Penning trap with high and low field regions are computed. The plasma is assumed to follow the Boltzmann density distribution along magnetic field lines.
Date: May 21, 2019
Creator: Lane, Ryan A. & Ordonez, Carlos A.
Object Type: Article
System: The UNT Digital Library

Artificially structured boundary plasma trap

This article presents a computer simulation of single-species non-neutral plasma confinement using an artificially structured boundary. The results support the prospect of developing plasma space-charge based confinement, with an unmagnetized plasma of one species of charged particles confined by an electric field produced by an edge-confined plasma of a second species of charged particles.
Date: September 20, 2019
Creator: Hedlof, R. M. & Ordonez, Carlos A.
Object Type: Article
System: The UNT Digital Library
Insights into the Bioinformatics and Transcriptional Analysis of the Elongator Complexes (ELPs) Gene Family of Wheat: TaELPs Contribute to Wheat Abiotic Stress Tolerance and Leaf Senescence (open access)

Insights into the Bioinformatics and Transcriptional Analysis of the Elongator Complexes (ELPs) Gene Family of Wheat: TaELPs Contribute to Wheat Abiotic Stress Tolerance and Leaf Senescence

Article states that elongator complexes (ELPs) are the protein complexes that promote transcription through histone acetylation in eukaryotic cells and interact with elongating RNA polymerase II. ELPs’ role in plant growth and development, signal transduction, and response to biotic and abiotic stresses have been confirmed in model plants, but the functions of the wheat ELP genes are not well documented. The present study identified 18 members of the ELPs from the wheat genome with a homology search.
Date: February 20, 2023
Creator: Guo, Feng; Islam, Md Ashraful; Lv, Chenxu; Jin, Xiujuan; Sun, Lili; Zhao, Kai et al.
Object Type: Article
System: The UNT Digital Library
Determining priority areas for an Endangered cold-adapted snake on warming mountaintops (open access)

Determining priority areas for an Endangered cold-adapted snake on warming mountaintops

This article develops a spatial prioritization model based on accurate estimates of remotely-sensed data and maps of threats potentially affecting long-term species persistence to identify priority areas for the conservation of the Endangered Greek meadow viper Vipera graeca, a cold-adapted species inhabiting mountaintops in the Pindos Mountains of Greece and Albania.
Date: March 12, 2020
Creator: Mizsei, Edvárd; Szabolcs, Márton; Szabó, Loránd; Boros, Zoltán; Mersini, Kujtim; Roussos, Stephanos Antonios et al.
Object Type: Article
System: The UNT Digital Library
ALMA Observations of Quasar Host Galaxies at z ≃ 4.8 (open access)

ALMA Observations of Quasar Host Galaxies at z ≃ 4.8

Article presents ALMA Band 7 data of the [C ıı] 𝜆157.74 𝜇m emission line and underlying far-IR (FIR) continuum for 12 luminous quasars at 𝓏 ≃ 4.8 powered by fast-growing supermassive black holes (SMBHs).
Date: May 27, 2020
Creator: Shemmer, Ohad; Nguyen, Nathen H.; Lira, Paulina; Trakhtenbrot, Benny; Netzer, Hagai; Cicone, Claudia et al.
Object Type: Article
System: The UNT Digital Library
Workflow for the Quantification of Soluble and Insoluble Carbohydrates in Soybean Seed (open access)

Workflow for the Quantification of Soluble and Insoluble Carbohydrates in Soybean Seed

This article develops and validates a sequential protocol for quantifying reserve and structural carbohydrates in soybean seed. It was successfully applied to eight soybean genotypes harvested from two locations, and the resulting correlations of carbohydrate and oil or protein are presented. This methodology has the potential not only to guide soybean cultivar optimization processes but also to be expanded to other crops with only slight modifications.
Date: July 30, 2020
Creator: Moretti, Ademar; Arias, Cintia L.; Mozzoni, Leandro A.; Chen, Pengyin; McNeece, Brant T.; Mian, M. A. Rouf et al.
Object Type: Article
System: The UNT Digital Library
Heterogeneous Distribution of Erucic Acid in Brassica napus Seeds (open access)

Heterogeneous Distribution of Erucic Acid in Brassica napus Seeds

Article describes study examining low- and high-erucic acid accessions of B. napus seeds for the distribution of erucic acid-containing lipids and the gene transcripts encoding the enzymes involved in pathways for its incorporation into triacylglycerols (TAGs) across the major tissues of the seeds.
Date: January 29, 2020
Creator: Lu, Shaoping; Aziz, Mina; Sturtevant, Drew; Chapman, Kent Dean & Guo, Liang
Object Type: Article
System: The UNT Digital Library
POSMM: an efficient alignment-free metagenomic profiler that complements alignment-based profiling (open access)

POSMM: an efficient alignment-free metagenomic profiler that complements alignment-based profiling

Article presents POSMM, Python-Optimized Standard Markov Model classifier, which is a new incarnation of the Markov model approach to metagenomic sequence analysis. The authors claim that by combining POSMM with ultrafast classifiers such as Kraken2, their complementary strengths can be leveraged to produce higher overall accuracy in metagenomic sequence classification than by either as a standalone classifier. POSMM is a user-friendly and highly adaptable tool designed for broad use by the metagenome scientific community.
Date: March 8, 2023
Creator: Burks, David J.; Pusadkar, Vaidehi & Azad, Rajeev K.
Object Type: Article
System: The UNT Digital Library
Altitudinal gradients in Magellanic sub-Antarctic lagoons: the effect of elevation on freshwater macroinvertebrate diversity and distribution (open access)

Altitudinal gradients in Magellanic sub-Antarctic lagoons: the effect of elevation on freshwater macroinvertebrate diversity and distribution

In this article, freshwater macroinvertebrate diversity associated with lakes and ponds along the altitudinal gradient of a Magellanic sub-Antarctic watershed are assessed. A monotonic decline in species richness was observed with increasing elevation, with simpler and more even community composition at higher altitude. This pattern differs from the mid-peak trend found in streams of the same watershed. Functional feeding group structure also diminished with increasing elevation.
Date: July 29, 2019
Creator: Rendoll Cárcamo, Javier; Contador, Tamara; Gañán, Melisa; Pérez Troncoso, Carolina; Maldonado Márquez, Alan; Convey, Peter et al.
Object Type: Article
System: The UNT Digital Library
Urban edge trees: Urban form and meteorology drive elemental carbon deposition to canopies and soils (open access)

Urban edge trees: Urban form and meteorology drive elemental carbon deposition to canopies and soils

Article asserts that urban tree canopies are a significant sink for atmospheric elemental carbon (EC)--and air pollutant that is a powerful climate-forcing agent and threat to human health. The authors' findings indicate that complex configurations of roads, buildings, and vegetation produce “urban edge trees” that contribute to heterogeneous EC deposition patterns across urban systems, with implications for greenspace planning.
Date: September 27, 2022
Creator: Ponette-González, Alexandra G.; Chen, Dongmei; Elderbrock, Evan; Rindy, Jenna E.; Barrett, Tate E.; Luce, Brett W. et al.
Object Type: Article
System: The UNT Digital Library
Noncatalytic chalcone isomerase-fold proteins in Humulus lupulus are auxiliary components in prenylated flavonoid biosynthesis (open access)

Noncatalytic chalcone isomerase-fold proteins in Humulus lupulus are auxiliary components in prenylated flavonoid biosynthesis

This article characterizes two noncatalytic chalcone isomerase (CHI)-like proteins using engineered yeast harboring all genes required for demethylxanthohumol (DMX) production.
Date: February 6, 2018
Creator: Ban, Zhaonan; Qin, Hao; Mitchell, Andrew J.; Liu, Baoxiu; Zhang, Fengxia; Weng, Jing-Ke et al.
Object Type: Article
System: The UNT Digital Library
Gene regulatory networks for lignin biosynthesis in switchgrass (Panicum virgatum) (open access)

Gene regulatory networks for lignin biosynthesis in switchgrass (Panicum virgatum)

This article presents a combination of computational and experimental approaches to develop gene regulatory networks for lignin formation in switchgrass (Panicum virgatum), which has been selected as a biofuel crop in the United States.
Date: May 11, 2018
Creator: Rao, Xiaolan; Chen, Xin; Shen, Hui; Ma, Qin; Li, Guifen; Tang, Yuhong et al.
Object Type: Article
System: The UNT Digital Library
Engineered nonlinear materials using gold nanoantenna array (open access)

Engineered nonlinear materials using gold nanoantenna array

This article describes the use of a gold nanoantenna array to enhance both the nonlinear refractive index and two-photon absorption (2PA) of the organic dye 4,4'-bis(diphenylamino)stilbene (BDPAS), which is known as a dye with relatively large 2PA.
Date: August 21, 2017
Creator: Drachev, Vladimir P.; Kildishev, Alexander V.; Borneman, Joshua D.; Chen, Kuo-Ping; Shalaev, Vladimir; Yamnitskiy, Konstantin et al.
Object Type: Article
System: The UNT Digital Library
Growth of Highly-Ordered Metal Nanoparticle Arrays in the Dimpled Pores of an Anodic Aluminum Oxide Template (open access)

Growth of Highly-Ordered Metal Nanoparticle Arrays in the Dimpled Pores of an Anodic Aluminum Oxide Template

Article presents a reliable, scalable, and inexpensive technology for the fabrication of ordered arrays of metal nanoparticles with large areal coverage on various substrates. Using a simple model, the experimental results were interpreted and supported by numerical estimations.
Date: November 8, 2022
Creator: Farmer, Gavin; Abraham, James; Littler, Chris; Syllaios, A. J. & Philipose, Usha
Object Type: Article
System: The UNT Digital Library
Retinal oxygen supply shaped the functional evolution of the vertebrate eye (open access)

Retinal oxygen supply shaped the functional evolution of the vertebrate eye

Article explores the hypothesis that oxygen diffusion limited the evolution of retinal morphology by reconstructing the evolution of retinal thickness and the various mechanisms for retinal oxygen supply, including capillarization and acid-induced haemoglobin oxygen unloading.
Date: December 10, 2019
Creator: Damsgaard, Christian; Lauridsen, Henrik; Funder, Anette MD; Thomsen, Jesper S.; Desvignes, Thomas; Crossley, Dane A., II et al.
Object Type: Article
System: The UNT Digital Library
Covalency in Fe2O3 and FeO: Consequences for XPS satellite intensity (open access)

Covalency in Fe2O3 and FeO: Consequences for XPS satellite intensity

Article examines the covalent character of the interaction between the metal cation and the oxygen ligands for two Fe oxides with different nominal oxidation states, Fe(II)O, and Fe(III)₂O₃.
Date: November 17, 2020
Creator: Bagus, Paul S.; Nelin, Connie J.; Brundle, C. R.; Crist, B. Vincent; Lahiri, N. & Rosso, Kevin M.
Object Type: Article
System: The UNT Digital Library
Plasma modification of vanadium oxynitride surfaces: Characterization by in situ XPS experiments and DFT calculations (open access)

Plasma modification of vanadium oxynitride surfaces: Characterization by in situ XPS experiments and DFT calculations

Article reports XPS and DFT findings regarding the O₂ plasma, NH₃ plasma, and NH₃+O₂ plasma treatment of sputter deposited vanadium oxynitride films.
Date: October 13, 2020
Creator: Osonkie, A.; Lee, V.; Chukwunenye, P.; Cundari, Thomas R., 1964- & Kelber, Jeffry A.
Object Type: Article
System: The UNT Digital Library
Identification and characterization of a core set of ROS wave‐associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light (open access)

Identification and characterization of a core set of ROS wave‐associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light

Article reveal that the systemic transcriptomic response of plants to excess light stress is extensive in the context of systemic acquired acclimation and involves an early (2 min) and transient stage of transcript expression that includes thousands of genes.
Date: December 6, 2018
Creator: Zandalinas, Sara I.; Sengupta, Soham; Burks, David; Azad, Rajeev K. & Mittler, Ron
Object Type: Article
System: The UNT Digital Library
Recurrent urinary tract infection and estrogen shape the taxonomic ecology and function of the postmenopausal urogenital microbiome (open access)

Recurrent urinary tract infection and estrogen shape the taxonomic ecology and function of the postmenopausal urogenital microbiome

Article describes how postmenopausal women are severely affected by recurrent urinary tract infection (rUTI). The authors perform shotgun metagenomics and advanced culture on urine from a controlled cohort of postmenopausal women to identify urogenital microbiome compositional and function changes linked to rUTI susceptibility.
Date: October 18, 2022
Creator: Neugent, Michael D.; Kumar, Ashwani; Hulyalkar, Neha V.; Lutz, Kevin C.; Nguyen, Vivian H.; Fuentes, Jorge L. et al.
Object Type: Article
System: The UNT Digital Library
Simulation of an electrostatic quadrupole quadruplet focusing lens system for MeV multi-ion micro-beam (open access)

Simulation of an electrostatic quadrupole quadruplet focusing lens system for MeV multi-ion micro-beam

Article presents the simulations of an electrostatic quadrupole quadruplet (EQQ) lens system that will be used in a new sub-micron multi-ion beam for radiobiological studies.
Date: October 2, 2019
Creator: Glass, Gary A.; Chirayath, V. A.; Arya, H.; Jin, M.; Weiss, A. H. & Chi, Y.
Object Type: Article
System: The UNT Digital Library
Artificially structured boundary for confinement of effectively unmagnetized cryogenic antimatter plasmas (open access)

Artificially structured boundary for confinement of effectively unmagnetized cryogenic antimatter plasmas

The article is from conference proceedings that discuss an artificially structured boundary (ABS) considered to consist of a spatially periodic arrangement of electrostatically plugged magnetic cusps. As envisioned, a non-neutral positron plasma could be confined by an ASB along its edge, and the space charge of the positron plasma would serve to confine an antiproton plasma. If the conditions of the two-species plasma are suitable, production of antihydrogen via three-body recombination for antimatter gravity studies may be possible.
Date: January 23, 2018
Creator: Hedlof, R. M. & Ordonez, Carlos A.
Object Type: Article
System: The UNT Digital Library
Giant spin Hall effect in two-dimensional monochalcogenides (open access)

Giant spin Hall effect in two-dimensional monochalcogenides

This article, using calculations from first principles, reveals for the first time giant intrinsic spin Hall conductivities (SHC) in these materials. In particular, the article shows that the SHC resonances can be easily tuned by combination of strain and doping and, in some cases, strain can be used to induce semiconductor to metal transition that makes a giant spin Hall effect possible even in absence of doping.
Date: October 30, 2018
Creator: Sławińska, Jagoda; Cerasoli, Frank T.; Wang, Haihang; Postorino, Sara; Supka, Andrew; Curtarolo, Stefano et al.
Object Type: Article
System: The UNT Digital Library
Polarization in electrostatics and circuits: Computing and visualizing surface charge distributions (open access)

Polarization in electrostatics and circuits: Computing and visualizing surface charge distributions

Article describing an algorithm or computing the detailed surface charge distributions in equilibrium electrostatic situations and in steady-state DC circuits, and discuss the results of the computations of surface charge distributions for several systems.
Date: December 14, 2018
Creator: Chabay, Ruth & Sherwood, Bruce
Object Type: Article
System: The UNT Digital Library