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Targeting hydroxycinnamoyl CoA: shikimate hydroxycinnamoyl transferase for lignin modification in Brachypodium distachyon (open access)

Targeting hydroxycinnamoyl CoA: shikimate hydroxycinnamoyl transferase for lignin modification in Brachypodium distachyon

This article conducts a study to evaluate the utility of Hydroxycinnamoyl CoA: shikimate hydroxycinnamoyl transferase (HCT) as a target for lignin modification in a species with an “incomplete” shikimate shunt. Results imply that this gene is a preferred target for biotechnological improvement of grasses for bioprocessing.
Date: February 27, 2021
Creator: Serrani-Yarce, Juan Carlos; Escamilla-Treviño, Luis; Barros, Jaime; Gallego-Giraldo, Lina; Pu, Yunqiao; Ragauskas, Arthur J. (Arthur Jonas), 1957- et al.
Object Type: Article
System: The UNT Digital Library
A rapid thioacidolysis method for biomass lignin composition and tricin analysis (open access)

A rapid thioacidolysis method for biomass lignin composition and tricin analysis

This article developed a modified, rapid higher throughput thioacidolysis method to analyze both lignin monomeric composition and tricin content in the lignin polymer. The results demonstrate that the modified method can be used for rapid, high-throughput, and reliable lignin composition and tricin content analyses for screening transgenic plants for cell wall modifications or in large-scale genome-wide association studies (GWAS).
Date: January 11, 2021
Creator: Chen, Fang; Zhuo, Chunliu; Xiao, Xirong; Pendergast, Thomas H. & Devos, Katrien M.
Object Type: Article
System: The UNT Digital Library
A gene-editing/complementation strategy for tissue-specific lignin reduction while preserving biomass yield (open access)

A gene-editing/complementation strategy for tissue-specific lignin reduction while preserving biomass yield

This article develops a method, using a single DNA construct that uses CRISPR–Cas9 gene editing to knock-out expression of an endogenous gene of lignin monomer biosynthesis while at the same time expressing a modified version of the gene’s open reading frame that escapes cutting by the Cas9 system and complements the introduced mutation in a tissue-specific manner. This method is applicable to any plant species in which transformation and gene editing are feasible and validated vessel-specific promoters are available.
Date: September 3, 2021
Creator: Yu, Hasi; Liu, Chang & Dixon, R. A.
Object Type: Article
System: The UNT Digital Library
Role of ribosomal RNA released from red cells in blood coagulation in zebrafish and humans (open access)

Role of ribosomal RNA released from red cells in blood coagulation in zebrafish and humans

This article identifies that an rRNA released in hemolysis activates clotting in human and zebrafish plasma. Furthermore, it shows that fish Hgfac plays a role in rRNA-mediated activation of coagulation.
Date: November 17, 2021
Creator: Alharbi, Abdulmajeed; Iyer, Neha; Al Qaryoute, Ayah; Raman, Revathi; Burks, David J.; Azad, Rajeev K. et al.
Object Type: Article
System: The UNT Digital Library
Microkinetic coagulation assays for human and zebrafish plasma (open access)

Microkinetic coagulation assays for human and zebrafish plasma

This article creates a microkinetic assay for human and zebrafish plasmas using 1 μl plasma under conditions similar to prothrombin time (PT) and partial thromboplastin time (PTTs). The established microkinetic assay could measure blood coagulation activity in models like zebrafish and human blood samples obtained from a finger prick in adults or heel prick in infants.
Date: January 2021
Creator: Iyer, Neha & Jagadeeswaran, Pudur
Object Type: Article
System: The UNT Digital Library
Sealing of the universally Baire sets (open access)

Sealing of the universally Baire sets

This article outlines the proof that over some mild large cardinal theory, Sealing is equiconsistent with Largest Suslin Axiom (LSA)-over-uB. Let LSA-over-uB be the statement that in all (set) generic extensions there is a model of LSA whose Suslin, co-Suslin sets are the universally Baire sets.
Date: July 2, 2021
Creator: Sargsyan, Grigor & Trang, Nam
Object Type: Article
System: The UNT Digital Library
A window-space-directed assembly strategy for the construction of supertetrahedron-based zeolitic mesoporous metal–organic frameworks with ultramicroporous apertures for selective gas adsorption (open access)

A window-space-directed assembly strategy for the construction of supertetrahedron-based zeolitic mesoporous metal–organic frameworks with ultramicroporous apertures for selective gas adsorption

Article presenting a novel window-space-directed assembly strategy for the synthesis of zeolitic mesoporous MOFs with ultramicroporous apertures based on supertetrahedral building units. This article provides an effective and innovative strategy and paves the way for the future design and synthesis of functional, highly connected materials for various applications.
Date: March 5, 2021
Creator: Zhang, Lei; Li, Fangfang; You, Jianjun; Hua, Nengbin; Wang, Qianting; Si, Junhui et al.
Object Type: Article
System: The UNT Digital Library
Anion-enhanced excited state charge separation in a spiro-locked N-heterocycle-fused push-pull zinc porphyrin (open access)

Anion-enhanced excited state charge separation in a spiro-locked N-heterocycle-fused push-pull zinc porphyrin

This article presents a new type of push–pull charge transfer complex, viz., a spiro-locked N-heterocycle-fused zinc porphyrin, ZnP-SQ, that is shown to undergo excited state charge separation, which is enhanced by axial F⁻ binding to the Zn center. Spectroelectrochemical studies are used to identify the spectra of charge separated states and charge separation upon photoexcitation of ZnP is established.
Date: February 24, 2021
Creator: Chahal, Mandeep K.; Liyanage, Anudradha; Alsaleh, Ajyal Z.; Karr, P. A.; Hill, Jonathan P. & D'Souza, Francis
Object Type: Article
System: The UNT Digital Library
LDIP cooperates with SEIPIN and LDAP to facilitate lipid droplet biogenesis in Arabidopsis (open access)

LDIP cooperates with SEIPIN and LDAP to facilitate lipid droplet biogenesis in Arabidopsis

Article showing that a recently identified protein termed LD-associated protein [LDAP]-interacting protein (LDIP) works together with both endoplasmic reticulum-localized SEIPIN and the LD-coat protein LDAP to facilitate LD formation in Arabidopsis thaliana. The data is discussed in the context of a new model for LD biogenesis in plant cells with evolutionary connections to LD biogenesis in other eukaryotes.
Date: June 9, 2021
Creator: Pyc, Michal; Gidda, Satinder K.; Seay, Damien C.; Esnay, Nicolas; Kretzschmar, Franziska K.; Cai, Yingqi et al.
Object Type: Article
System: The UNT Digital Library
Re-engineering Plant Phenylpropanoid Metabolism With the Aid of Synthetic Biosensors (open access)

Re-engineering Plant Phenylpropanoid Metabolism With the Aid of Synthetic Biosensors

Article that provides a brief overview of current research on synthetic biology and metabolic engineering approaches to control phenylpropanoid synthesis and phenylpropanoid-related biosensors, advocating for the use of biosensors and genetic circuits as a step forward in plant synthetic biology to develop autonomously-controlled phenylpropanoid-producing plant biofactories.
Date: September 16, 2021
Creator: Ferreira, Savio S. & Antunes, Mauricio S.
Object Type: Article
System: The UNT Digital Library
Cysne et al. Reply (open access)

Cysne et al. Reply

This article is a response to a comment on the authors' original article "Disentangling Orbital and Valley Hall Effects in Bilayers of Transition Metal Dichalcogenides." The authors' response concludes that they do not believe the main points of the original Letter are affected by the Comment.
Date: October 1, 2021
Creator: Cysne, Tarik P.; Costa, Marcio; Canonico, Luis M.; Buongiorno Nardelli, Marco; Muniz, R. B. & Rappoport, Tatiana G.
Object Type: Article
System: The UNT Digital Library
Optimization of the Observing Cadence for the Rubin Observatory Legacy Survey of Space and Time: A Pioneering Process of Community-focused Experimental Design (open access)

Optimization of the Observing Cadence for the Rubin Observatory Legacy Survey of Space and Time: A Pioneering Process of Community-focused Experimental Design

This article is part of a Focus Issue on the topic of Rubin LSST Survey Strategy Optimization. The motivation, history, and decision-making process of the observing strategy optimization are detailed, giving context to the science-driven proposals and recommendations for the survey strategy included in this Focus Issue.
Date: December 22, 2021
Creator: Bianco, Federica B.; Ivezić, Željko; Jones, R. Lynne; Graham, Melissa L.; Marshall, Phil; Saha, Abhijit et al.
Object Type: Article
System: The UNT Digital Library
Functional Porous Organic Polymers as Advanced Decontamination Materials for Water Purification (open access)

Functional Porous Organic Polymers as Advanced Decontamination Materials for Water Purification

Data management plan for the grant "Functional Porous Organic Polymers as Advanced Decontamination Materials for Water Purification." This project seeks to develop and deploy a new class of porous organic polymers which have high capacity and selectivity to rapidly remove heavy metal contaminants well below parts per million level standards set by the Environmental Protection Agency. The project will engineer porosity and surface chemistry of porous organic polymers to clean inorganic heavy metal contaminants from both surface water and wastewater. Porous organic polymers are robust, chemically and thermally stable, scalable, and modular, with very high surface area. The modularity of these polymers allows for a molecular-level tuning of the pore structure and surface chemistry that allows for engineered site-specificity of binding sites that target the heavy metal contaminants. Recent data shows these new materials offer a significant increase in capacity relative to benchmark materials, with a rapid removal of mercury and other heavy metal ions. This project will advance the concept by exploring rational design of these porous polymers with different topologies by customizing the monomer with various binding groups. The objectives of the project include design, synthesis, and characterization, followed by assessment of these materials to remove inorganic contaminants …
Date: 2021-02-01/2021-07-31
Creator: Ma, Shengqian
Object Type: Text
System: The UNT Digital Library
Generating pathogen- / pest-resistant non-GMO cotton through targeted genome editing of oxylipin signaling pathways (open access)

Generating pathogen- / pest-resistant non-GMO cotton through targeted genome editing of oxylipin signaling pathways

Data management plan for the research grant "Generating pathogen- / pest-resistant non-GMO cotton through targeted genome editing of oxylipin signaling pathways."
Date: 2021-01-15/2024-01-14
Creator: Ayre, Brian G.; McGarry, Roisin C. & Shah, Jyoti
Object Type: Text
System: The UNT Digital Library
LLELA Quail Program: Quail in the Park Cities? Restoring a functional quail population to a small rangeland system in the Dallas Metroplex (open access)

LLELA Quail Program: Quail in the Park Cities? Restoring a functional quail population to a small rangeland system in the Dallas Metroplex

Data management plan for the grant, "LLELA Quail Program: Quail in the Park Cities? Restoring a functional quail population to a small rangeland system in the Dallas Metroplex."
Date: 2021-10-01/2022-09-30
Creator: Gregory, Andrew
Object Type: Text
System: The UNT Digital Library
Accelerated reliability testing of Cu-Al bimetallic contact by a micropattern corrosion testing platform for wire bond device application (open access)

Accelerated reliability testing of Cu-Al bimetallic contact by a micropattern corrosion testing platform for wire bond device application

This article presents a novel method of in-situ investigation of the device corrosion process to capture the real time mechanistic information not obtained in standard reliability testing.
Date: March 26, 2021
Creator: Ashok Kumar, Goutham Isaac; Alptekin, John; Caperton, Joshua; Salunke, Ashish & Chyan, Oliver Ming-Ren
Object Type: Article
System: The UNT Digital Library
Biophotons-and-emergence-of-quantum-coherencea-diffusion-entropy-analysisEntropy (open access)

Biophotons-and-emergence-of-quantum-coherencea-diffusion-entropy-analysisEntropy

This article studies the emission of photons from germinating seeds using an experimental technique designed to detect light of extremely small intensity. It analyzes the dark count signal without germinating seeds as well as the photon emission during the germination process.
Date: April 29, 2021
Creator: Benfatto, Maurizio; Pace, Elisabetta; Curceanu, Catalina; Scordo, Alessandro; Clozza, Alberto; Davoli, Ivan et al.
Object Type: Article
System: The UNT Digital Library
Caputo Fractional Derivative and Quantum-Like Coherence (open access)

Caputo Fractional Derivative and Quantum-Like Coherence

This article studies two forms of anomalous diffusions and discusses the joint use of these prescriptions, with a phenomenological method and a theoretical projection method, leading to two apparently different diffusion equations. The authors prove that the two diffusion equations are equivalent and design a time series that corresponds to the anomalous diffusion equation proposed.
Date: February 9, 2021
Creator: Culbreth, Garland; Bologna, Mauro; West, Bruce J. & Grigolini, Paolo
Object Type: Article
System: The UNT Digital Library
Characterization of the Nit6803 nitrilase homolog from the cyanotroph Pseudomonas fluorescens NCIMB 11764 (open access)

Characterization of the Nit6803 nitrilase homolog from the cyanotroph Pseudomonas fluorescens NCIMB 11764

This article reports the purification and characterization of a nitrilase (E.C. 3.5.5.1) (Nit11764) essential for the assimilation of cyanide as the sole nitrogen source by the cyanotroph, Pseudomonas fluorescens NCIMB 11764.
Date: January 16, 2021
Creator: Jones, Lauren B.; Wang, Xiaoqiang; Gullapalli, Jaya S. & Kunz, Daniel A.
Object Type: Article
System: The UNT Digital Library
Do gene-environment interactions play a role in COVID-19 distribution? The case of Alpha-1 Antitrypsin, air pollution and COVID-19 (open access)

Do gene-environment interactions play a role in COVID-19 distribution? The case of Alpha-1 Antitrypsin, air pollution and COVID-19

This article evaluates the role that gene-environment interaction between air-pollution and Alpha-1 Antitrypsin (AAT) genes plays in the severity of COVID-19. Results find parallelism between the number of COVID deaths and the AAT*air pollution global risk in Europe.
Date: May 7, 2021
Creator: Murgia, Nicola; Corsico, Angelo Guido; D'Amato, Gennaro; Maesano, Cara Nichole; Tozzi, Arturo & Annesi-Maesano, Isabella
Object Type: Article
System: The UNT Digital Library
High degree of non-genetic phenotypic variation in the vascular system of crayfish: a discussion of possible causes and implications (open access)

High degree of non-genetic phenotypic variation in the vascular system of crayfish: a discussion of possible causes and implications

This article studies the hemolymph vascular system (HVS) in two cambarid crayfishes, i.e. the Marbled Crayfish, Procambarus virginalis Lyko, 2017 and the Spiny Cheek Crayfish, Faxonius limosus (Rafinesque, 1817) in regard to areas of non-genetic phenotypic variation.
Date: August 12, 2021
Creator: Scholz, Stephan; Göpel, Torben; Richter, Stefan & Wirkner, Christian S.
Object Type: Article
System: The UNT Digital Library
Magnesium and Fibromyalgia: A Literature Review (open access)

Magnesium and Fibromyalgia: A Literature Review

This article investigates if the widespread use of magnesium in fibromyalgia is supported by evidence in the literature. This review provides a layout of the studies examining the correlation between body magnesium levels and fibromyalgia and elaborates on the trials testing the effectiveness of magnesium in treating different clinical parameters of fibromyalgia.
Date: August 14, 2021
Creator: Boulis, Michael; Boulis, Mary & Clauw, Daniel
Object Type: Article
System: The UNT Digital Library
Proton reduction by phosphinidene-capped triiron clusters (open access)

Proton reduction by phosphinidene-capped triiron clusters

This article prepares and examines Bis(phosphinidene)-capped triiron carbonyl clusters, including electron rich derivatives formed by substitution with chelating diphosphines as proton reduction catalysts.
Date: April 20, 2021
Creator: Rahaman, Ahibur; Lisensky, George C.; Haukka, Matti; Tocher, Derek A.; Richmond, Michael G.; Colbran, Stephen B. et al.
Object Type: Article
System: The UNT Digital Library
Ultrafast dephasing in hydrogen-bonded pyridine–water mixtures (open access)

Ultrafast dephasing in hydrogen-bonded pyridine–water mixtures

Article studying Hydrogen-bonded pyridine–water mixtures by a time-frequency resolved coherent Raman spectroscopic technique.
Date: May 4, 2021
Creator: Ariunbold, Gombojav O.; Semon, Bryan; Nagpal, Supriya & Rostovtsev, Yuri V.
Object Type: Article
System: The UNT Digital Library