Advanced modeling of materials with PAOFLOW 2.0: New features and software design (open access)

Advanced modeling of materials with PAOFLOW 2.0: New features and software design

This article describes the recent re-design of the code and the new features and improvements in performance of PAOFLOW, a software tool that constructs tight-binding Hamiltonians from self-consistent electronic wavefunctions by projecting onto a set of atomic orbitals.
Date: September 2, 2021
Creator: Cesaroli, Frank T.; Supka, Andrew; Jayaraj, Anooja; Costa, Marcio; Siloi, Ilaria; Sławińska, Jagoda et al.
System: The UNT Digital Library
Analysis of the potential behavioral impact of methanol when used as a solvent: Dataset from zebrafish (Danio rerio) behavioral research (open access)

Analysis of the potential behavioral impact of methanol when used as a solvent: Dataset from zebrafish (Danio rerio) behavioral research

This article is a dataset that describes behavioral results in zebrafish (Danio rerio) individually exposed to methanol, a solvent which is capable of altering physiology and behavior high concentrations.
Date: April 1, 2021
Creator: Hamilton, Trevor J.; Szaszkiewicz, Joshua; Krook, Jeffrey & Burggren, Warren W.
System: The UNT Digital Library
Childhood Asthma and Smoking: Moderating Effect of Preterm Status and Birth Weight (open access)

Childhood Asthma and Smoking: Moderating Effect of Preterm Status and Birth Weight

Article exploring the association between second-hand smoke exposure, asthma, and asthma severity in children ages 6-17 as well as the effect of birth weight and prematurity (BWP) on parental smoking and asthma. Results indicate that focused asthma interventions in children should inquire about BWP status as well as parental smoking and household smoke exposure to reduce asthma morbidity and mortality.
Date: April 17, 2021
Creator: Ogbu, Chukwuemeka E.; Ogbu, Stella C.; Khadka, Dibya & Kirby, Russell S.
System: The UNT Digital Library
Bifunctional activation of methane by bioinspired transition metal complexes. A simple methane protease model (open access)

Bifunctional activation of methane by bioinspired transition metal complexes. A simple methane protease model

Article modeling Metal-based bifunctional methane activators using density functional theory. The research yields insight into possible avenues for bio-inspired methane activators.
Date: February 15, 2021
Creator: Anderson, Mary E.; Marks, Michael B. & Cundari, Thomas R., 1964-
System: The UNT Digital Library
Patch characteristics and domestic dogs differentially affect carnivore space use in fragmented landscapes in southern Chile (open access)

Patch characteristics and domestic dogs differentially affect carnivore space use in fragmented landscapes in southern Chile

This article's aim is to determine whether (a) the spatial use of domestic dogs increases with habitat destruction, and (b) domestic dogs and habitat destruction drive the spatial use of native carnivores in a heavily degraded agricultural landscape. Conclusions highlight that domestic dog occupancy was positively correlated with habitat loss and future conditions of increased fragmentation and habitat loss will likely increase the potential contact between domestic dogs and native carnivores.
Date: August 30, 2021
Creator: Malhotra, Rumaan; Jiménez, Jaime E. & Harris, Nyeema C;
System: The UNT Digital Library
Simulation of the formation of antihydrogen via magnetobound positronium (open access)

Simulation of the formation of antihydrogen via magnetobound positronium

This article simulates Antihydrogen formation involving magnetobound positronium by computing classical trajectories.
Date: September 9, 2021
Creator: Aguirre, F. F. & Ordonez, Carlos A.
System: The UNT Digital Library
Dense Locally Finite Subgroups of Automorphism Groups of Ultraextensive Spaces (open access)

Dense Locally Finite Subgroups of Automorphism Groups of Ultraextensive Spaces

Article verifying a conjecture of Vershik by showing that Hall’s universal countable locally finite group can be embedded as a dense subgroup in the isometry group of the Urysohn space and in the automorphism group of the random graph. It shows the same for all automorphism groups of known infinite ultraextensive spaces.
Date: August 18, 2021
Creator: Etedadialiabadi, Mahmood; Gao, Su; Le Maître, François & Melleray, Julien
System: The UNT Digital Library
Evidence of Endozoochory in Upland Geese Chloephaga picta and White-Bellied Seedsnipes Attagis malouinus in Sub-Antarctic Chile (open access)

Evidence of Endozoochory in Upland Geese Chloephaga picta and White-Bellied Seedsnipes Attagis malouinus in Sub-Antarctic Chile

This article evaluates the role of endozoochory in herbivorous and sympatric bird species in sub-Antarctic Chile. The authors hypothesize that fragments of bryophyte gametophytes retrieved from their feces are viable and capable of regenerating new plant tissue. This relationship may have important implications in the way bryophytes disperse and colonize habitats facing climate change.
Date: June 10, 2021
Creator: Lázaro, Xenabeth A.; Mackenzie, Roy & Jiménez, Jaime E.
System: The UNT Digital Library
Crucial Development: Criticality Is Important to Cell-to-Cell Communication and Information Transfer in Living Systems (open access)

Crucial Development: Criticality Is Important to Cell-to-Cell Communication and Information Transfer in Living Systems

This article is the fourth paper of the Special Issue Memory and Criticality. It bridges the the theoretical debate on the role of memory and criticality discussed in the three earlier manuscripts, with a review of key concepts in biology and focus on cell-to-cell communication in organismal development. The authors suggest that in conjunction with morphogenetic gradients, there exist gradients of information transfer creating cybernetic loops of stability and disorder, setting the stage for adaptive capability. Criticality, therefore, appears to be an important factor in the transmission, transfer and coding of information for complex adaptive system development.
Date: August 31, 2021
Creator: Hunt von Herbing, Ione; Tonello, Lucio; Benfatto, Maurizio; Pease, April & Grigolini, Paolo
System: The UNT Digital Library
Developmental programming of DNA methylation and gene expression patterns is associated with extreme cardiovascular tolerance to anoxia in the common snapping turtle (open access)

Developmental programming of DNA methylation and gene expression patterns is associated with extreme cardiovascular tolerance to anoxia in the common snapping turtle

This article explores DNA methylation's role in the regulation of gene expression in reptiles. Results show that embryonic hypoxia programs DNA methylation and gene expression patterns and that these changes are associated with enhanced cardiac anoxia tolerance in snapping turtles later in life.
Date: September 6, 2021
Creator: Ruhr, Ilan; Bierstedt, Jacob; Rhen, Turk; Das, Debojyoti; Singh, Sunil Kumar; Miller, Solielle et al.
System: The UNT Digital Library
Multi-scale biodiversity drives temporal variability in macrosystems (open access)

Multi-scale biodiversity drives temporal variability in macrosystems

Article using decadal datasets that span aquatic and terrestrial macrosystems and structural equation modeling to show that local temporal variability and spatial synchrony increase temporal variability for entire macrosystems. This analysis is among the first to provide a quantitative argument for the value of regional species diversity.
Date: February 1, 2021
Creator: Patrick, Christopher J.; McCluney, Kevin E.; Ruhi, Albert; Gregory, Andrew; Sabo, John & Thorp, James H.
System: The UNT Digital Library
Calculation of Abraham Model L-Descriptor and Standard Molar Enthalpies of Vaporization for Linear C7-C14 Alkynes From Gas Chromatographic Retention Index Data (open access)

Calculation of Abraham Model L-Descriptor and Standard Molar Enthalpies of Vaporization for Linear C7-C14 Alkynes From Gas Chromatographic Retention Index Data

Article determines Abraham model L solute descriptors for an additional 33 linear C7-C14 alkynes based on published gas chromatographic retention indices for solutes eluted from capillary columns coated with squalane and apiezon L stationary phases.
Date: 2021
Creator: Shanmugam, Neel; Eddula, Shrika; Acree, William E. (William Eugene) & Abraham, M. H. (Michael H.)
System: The UNT Digital Library
On counting cuspidal automorphic representations for GSp(4) (open access)

On counting cuspidal automorphic representations for GSp(4)

Article
Date: April 15, 2021
Creator: Roy, Manami; Schmidt, Ralf & Yi, Shaoyun
System: The UNT Digital Library

Renormalization group and fractional calculus methods in a complex world: A review

This article is a review discussing the origin, development, and application of the renormalization group (RG) method in a variety of fields from the physical, social and life sciences, in singular perturbation theory, and reveal the need to connect the RG and the fractional calculus (FC). The authors also present recommendations for future research based on this new way of thinking.
Date: January 29, 2021
Creator: Guo, Lihong; Chen, YangQuan; Shi, Shaoyun & West, Bruce J.
System: The UNT Digital Library
Arabidopsis thaliana EARLY RESPONSIVE TO DEHYDRATION 7 Localizes to Lipid Droplets via Its Senescence Domain (open access)

Arabidopsis thaliana EARLY RESPONSIVE TO DEHYDRATION 7 Localizes to Lipid Droplets via Its Senescence Domain

This article includes a proteomics analysis of Lipid Droplets (LDs) isolated from drought-stressed Arabidopsis leaves and identifying EARLY RESPONSIVE TO DEHYDRATION 7 (ERD7) as a putative LD protein. Observations provide new insight to ERD7 and the SD-containing family of proteins in plants and suggest that ERD7 may be involved in functional aspects of plant stress response that also include localization to the LD surface.
Date: April 14, 2021
Creator: Doner, Nathan M.; Seay, Damien C.; Mehling, Marina; Sun, Siqi; Gidda, Satinder K.; Schmitt, Kerstin et al.
System: The UNT Digital Library
CRISPR/Cas9-Induced fad2 and rod1 Mutations Stacked With fae1 Confer High Oleic Acid Seed Oil in Pennycress (Thlaspi arvense L.) (open access)

CRISPR/Cas9-Induced fad2 and rod1 Mutations Stacked With fae1 Confer High Oleic Acid Seed Oil in Pennycress (Thlaspi arvense L.)

Article utilizing Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)/Cas9 technology to produce knockout mutations in the FATTY ACID DESATURASE2 (FAD2) and REDUCED OLEATE DESATURATION1 (ROD1) genes to increase oleic acid content in Pennycress (Thlaspi arvense L.). Results suggest that combinatorial knockout of ROD1 and FAE1 may be a viable route to commercially increase oleic acid content in pennycress seed oil whereas mutations in FAD2 will likely require at least partial function to avoid fitness trade-offs.
Date: April 22, 2021
Creator: Jarvis, Brice A.; Romsdahl, Trevor B.; McGinn, Michaela G.; Nazarenus, Tara J.; Cahoon, Edgar B.; Chapman, Kent Dean et al.
System: The UNT Digital Library
Dietary Exposure to Low Levels of Crude Oil Affects Physiological and Morphological Phenotype in Adults and Their Eggs and Hatchlings of the King Quail (Coturnix chinensis) (open access)

Dietary Exposure to Low Levels of Crude Oil Affects Physiological and Morphological Phenotype in Adults and Their Eggs and Hatchlings of the King Quail (Coturnix chinensis)

Article studying the king quail as an animal model to determine if chronic dietary exposure to crude oil in a parental population affects morpho-physiological phenotypic variables in their immediate offspring generation.
Date: April 9, 2021
Creator: Bautista, Naim M.; Do Amaral-Silva, Lara; Dzialowski, Edward M. (Edward Michael) & Burggren, Warren W.
System: The UNT Digital Library
Editorial: Microbial C1 Metabolism and Biotechnology (open access)

Editorial: Microbial C1 Metabolism and Biotechnology

This article is an editorial on the research topic Microbial C1 Metabolism and Biotechnology. This special topic presents studies focused on the fundamental aspects of C1 metabolism in diverse microbial systems with the ability to convert anthropogenic greenhouse gases into valuable products.
Date: August 27, 2021
Creator: Xiong, Wei; Kalyuzhnaya, Marina G. & Henard, Calvin
System: The UNT Digital Library
Covalent organic framework nanofluidic membrane as a platform for highly sensitive bionic thermosensation (open access)

Covalent organic framework nanofluidic membrane as a platform for highly sensitive bionic thermosensation

Article reporting a nanofluidic membrane based on an ionic covalent organic framework (COF) that is capable of intelligently monitoring temperature variations and expressing it in the form of continuous potential differences. This article pioneers a way to explore COFs for mimicking the sophisticated signaling system observed in the nature.
Date: March 23, 2021
Creator: Zhang, Pengcheng; Chen, Sifan; Zhu, Changjia; Hou, Linxiao; Xian, Weipeng; Zuo, Xiuhui et al.
System: The UNT Digital Library
Event-Driven Deep Learning for Edge Intelligence (EDL-EI) (open access)

Event-Driven Deep Learning for Edge Intelligence (EDL-EI)

Article on deep-learning framework for edge intelligence EDL-EI (event-driven deep learning for edge intelligence). To verify the proposed framework, the authors include a case study of air-quality scenarios based for the most polluted cities in South Korea and China.
Date: September 8, 2021
Creator: Shah, Sayed Khushal; Tariq, Zeenat; Lee, Jeehwan & Lee, Yugyung
System: The UNT Digital Library
Discovery of higher-order topological insulators using the spin Hall conductivity as a topology signature (open access)

Discovery of higher-order topological insulators using the spin Hall conductivity as a topology signature

This article shows a connection between spin Hall effect and HOTIs using a combination of ab initio calculations and tight-binding modeling. The model demonstrates how a non-zero bulk midgap spin Hall conductivity (SHC) emerges within the HOTI phase. This work guides novel experimental and theoretical advances towards higher-order topological insulator realization and applications.
Date: April 12, 2021
Creator: Costa, Marcio; Mera Acosta, Carlos; Padilha, Antonio C.M.; Cerasoli, Frank T.; Buongiorno Nardelli, Marco & Fazzio, Adalberto
System: The UNT Digital Library
Self-reporting molecularly imprinted polymer with the covalently immobilized ferrocene redox probe for selective electrochemical sensing of p-synephrine (open access)

Self-reporting molecularly imprinted polymer with the covalently immobilized ferrocene redox probe for selective electrochemical sensing of p-synephrine

Article simultaneously imprinting the p-synephrine 1 template and covalently immobilizing a a ferrocene redox probe in a (bis-bithiophene)-based polymer. The resulting molecularly imprinted polymer (MIP) was deposited on the Pt electrode as a thin film to form a redox self-reporting MIP film-based chemosensor.
Date: June 10, 2021
Creator: Lach, Patrycja; Cieplak, Maciej; Noworyta, Krzysztof R.; Pieta, Piotr; Lisowski, Wojciech; Kalecki, Jakub et al.
System: The UNT Digital Library
Dissecting the transcriptional regulation of proanthocyanidin and anthocyanin biosynthesis in soybean (Glycine max) (open access)

Dissecting the transcriptional regulation of proanthocyanidin and anthocyanin biosynthesis in soybean (Glycine max)

This article analyzes the transcriptional control of PA and anthocyanin biosynthesis in soybean. Results show that engineered PA biosynthesis in soybean exhibits qualitative and spatial differences from the better-studied model systems Arabidopsis thaliana and Medicago truncatula, and suggest targets for engineering PAs in soybean plants.
Date: February 4, 2021
Creator: Lu, Nan; Rao, Xiaolan; Jun, Ji Hyung & Dixon, R. A.
System: The UNT Digital Library
Elucidating the role of negative parenting in the genetic v. environmental influences on adult psychopathic traits (open access)

Elucidating the role of negative parenting in the genetic v. environmental influences on adult psychopathic traits

Article states that though adult psychopathic traits emerge from both genetic and environmental risk, no studies have examined etiologic associations between adult psychopathic traits and experiences of parenting in childhood, or the extent to which parenting practices may impact the heritability of adult psychopathic traits using a genetically-informed design. Utilizing a genetically-informed design, the authors found that both genetic and non-shared environmental factors contribute to the emergence of psychopathic traits.
Date: August 12, 2021
Creator: Dotterer, Hailey L.; Vazquez, Alexandra Y.; Hyde, Luke W.; Neumann, Craig S.; Santtila, Pekka; Pezzoli, Patrizia et al.
System: The UNT Digital Library