Identification of Pueraria spp. through DNA barcoding and comparative transcriptomics (open access)

Identification of Pueraria spp. through DNA barcoding and comparative transcriptomics

This article presents research where various kudzu accessions were analyzed through barcoding and comparative transcriptomics, generating tools for identification and molecular pathway analysis.
Date: January 3, 2022
Creator: Adolfo, Laci M.; Rao, Xiaolan & Dixon, R. A.
Object Type: Article
System: The UNT Digital Library
Editorial Feature: Meet the PCP Editor—Ana Paula Alonso (open access)

Editorial Feature: Meet the PCP Editor—Ana Paula Alonso

This article is an editorial feature highlighting editor of Plant & Cell Physiology Dr. Ana Paula Alonso. She is currently an Associate Professor in the Department of Biological Sciences and serves as the Director of the BioAnalytical Facility at the University of North Texas.
Date: January 13, 2021
Creator: Alonso, Ana Paula
Object Type: Article
System: The UNT Digital Library
Cascading effects of COVID-19 on population mobility and air quality: An exploration including place characteristics using geovisualization (open access)

Cascading effects of COVID-19 on population mobility and air quality: An exploration including place characteristics using geovisualization

Article examining the population mobility and air quality before and after the lockdown (mandated restriction of activity) during the public health response to COVID-19. This article is part of the Special Issue on COVID-19.
Date: January 22, 2022
Creator: Atkinson, Samuel F.; Kala, Abhishek K. & Tiwari, Chetan
Object Type: Article
System: The UNT Digital Library
Generating pathogen- / pest-resistant non-GMO cotton through targeted genome editing of oxylipin signaling pathways (open access)

Generating pathogen- / pest-resistant non-GMO cotton through targeted genome editing of oxylipin signaling pathways

Data management plan for the research grant "Generating pathogen- / pest-resistant non-GMO cotton through targeted genome editing of oxylipin signaling pathways."
Date: 2021-01-15/2024-01-14
Creator: Ayre, Brian G.; McGarry, Roisin C. & Shah, Jyoti
Object Type: Text
System: The UNT Digital Library
Scientists warning on the ecological effects of radioactive leaks on ecosystems (open access)

Scientists warning on the ecological effects of radioactive leaks on ecosystems

Article describes the devastating effects of nuclear radiation and its long-lasting consequences on Earth’s ecosystems. The authors call upon all scientists to communicate the importance of the environmental impacts of such an event to all life forms on Earth, including humankind.
Date: January 20, 2023
Creator: Bonacic, Cristián; Medellin, Rodrigo A.; Ripple, William; Sukumar, Raman; Ganswindt, Andre; Padua, Suzana M. et al.
Object Type: Article
System: The UNT Digital Library
Phenotypic Switching Resulting From Developmental Plasticity: Fixed or Reversible? (open access)

Phenotypic Switching Resulting From Developmental Plasticity: Fixed or Reversible?

Article explores the question of whether animals with switched phenotypes during early development are unable to return to a normal range of adult phenotypes, or whether they do not experience the specific environmental conditions necessary for them to switch back to the normal range of adult phenotypes.
Date: January 21, 2020
Creator: Burggren, Warren W.
Object Type: Article
System: The UNT Digital Library
A metabolomic platform to identify and quantify polyphenols in coffee and related species using liquid chromatography mass spectrometry (open access)

A metabolomic platform to identify and quantify polyphenols in coffee and related species using liquid chromatography mass spectrometry

Article describes how products of plant secondary metabolism, such as phenolic compounds, flavonoids, alkaloids, and hormones, play an important role in plant growth, development, stress resistance. The authors state that the overall goal of this study was to develop a high-throughput workflow to identify and quantify plant polyphenols.
Date: January 6, 2023
Creator: Castro-Moretti, Fernanda R.; Cocuron, Jean-Christophe; Castillo-Gonzalez, Humberto; Escudero-Leyva, Efrain; Chaverri, Priscila; Guerreiro-Filho, Oliveiro et al.
Object Type: Article
System: The UNT Digital Library
Metabolomics as an Emerging Tool for the Study of Plant–Pathogen Interactions (open access)

Metabolomics as an Emerging Tool for the Study of Plant–Pathogen Interactions

Paper discusses metabolomics studies that link changes in primary or specialized metabolism to the defense responses of plants against bacterial, fungal, nematode, and viral pathogens.
Date: January 29, 2020
Creator: Castro-Moretti, Fernanda R.; Gentzel, Irene N.; Mackey, David & Alonso, Ana Paula
Object Type: Article
System: The UNT Digital Library
Compartmentation of Triacylglycerol Accumulation in Plants (open access)

Compartmentation of Triacylglycerol Accumulation in Plants

Article studying an underappreciated complexity in pathways for synthesis and accumulation of Triacylglycerols from plants, familiar to most people as vegetable oils.
Date: January 20, 2012
Creator: Chapman, Kent Dean & Ohlrogge, John B.
Object Type: Article
System: The UNT Digital Library
A rapid thioacidolysis method for biomass lignin composition and tricin analysis (open access)

A rapid thioacidolysis method for biomass lignin composition and tricin analysis

This article developed a modified, rapid higher throughput thioacidolysis method to analyze both lignin monomeric composition and tricin content in the lignin polymer. The results demonstrate that the modified method can be used for rapid, high-throughput, and reliable lignin composition and tricin content analyses for screening transgenic plants for cell wall modifications or in large-scale genome-wide association studies (GWAS).
Date: January 11, 2021
Creator: Chen, Fang; Zhuo, Chunliu; Xiao, Xirong; Pendergast, Thomas H. & Devos, Katrien M.
Object Type: Article
System: The UNT Digital Library
Liquid Chromatography Tandem Mass Spectrometry Quantification of ¹³C-Labeling in Sugars (open access)

Liquid Chromatography Tandem Mass Spectrometry Quantification of ¹³C-Labeling in Sugars

This article describes a new methodology for monitoring sucrose labeling using liquid chromatography tandem mass spectrometry (LC-MS/MS). To date, the most commonly used method to monitor sucrose labeling is by nuclear magnetic resonance, which requires substantial amounts of biological sample.
Date: January 10, 2020
Creator: Cocuron, Jean-Christophe; Ross, Zacchary & Alonso, Ana P.
Object Type: Article
System: The UNT Digital Library
Larval Development in Tropical Gar (Atractosteus tropicus) Is Dependent on the Embryonic Thermal Regime: Ecological Implications under a Climate Change Context (open access)

Larval Development in Tropical Gar (Atractosteus tropicus) Is Dependent on the Embryonic Thermal Regime: Ecological Implications under a Climate Change Context

Article presents research on how temperature affects fish populations. The study shows how changes in temperature may induce craniofacial and morphological alterations in fish during early stages and contribute to understanding the possible effects of global warming in early development of fish and its ecological implications.
Date: December 14, 2021
Creator: Cordova-de la Cruz, Simrith E.; Riesco, Marta F.; Martínez-Bautista, Gil; Calzada-Ruiz, Daniel; Martínez-Burguete, Talhia; Peña-Marín, Emyr S. et al.
Object Type: Article
System: The UNT Digital Library

Development of Facultative Air Breathing in Bristlenose Plecos (Ancistrus cirrhosus)

Data collected on air breathing development in the bristlenose pleco. Bristlenose plecos breath air with a highly vascularized stomach when exposed to aquatic hypoxic conditions. This study looked at the development of this behavior and when the fish fist began to breathe air.
Date: January 2024
Creator: Crowder, Lauren W. & Dzialowski, Edward M. (Edward Michael)
Object Type: Dataset
System: The UNT Digital Library
A novel benzimidazole derivative, MBIC inhibits tumor growth and promotes apoptosis via activation of ROS-dependent JNK signaling pathway in hepatocellular carcinoma (open access)

A novel benzimidazole derivative, MBIC inhibits tumor growth and promotes apoptosis via activation of ROS-dependent JNK signaling pathway in hepatocellular carcinoma

This study further explores a prior screening program carried out using MTT assay that identified a series of novel benzimidazole derivatives, among which Methyl 2-(5-fluoro-2-hydroxyphenyl)-1H-benzo[d]imidazole-5-carboxylate (MBIC) showed highest anticancer efficacy compared to that of chemotherapeutic agent, cisplatin. In this article, the authors find that MBIC inhibited cell viability in different hepatocellular carcinoma (HCC) cell lines without exerting significant cytotoxic effects on normal liver cells. The results of this study demonstrate that MBIC may inhibit cell proliferation via ROS-mediated activation of the JNK signaling cascade in HCC cells.
Date: January 12, 2017
Creator: Dai, Xiaoyun; Wang, Ling Zhi; Deivasigamni, Amudha; Looi, Chung Yeng; Karthikeyan, Chandrabose; Trivedi, Piyush et al.
Object Type: Article
System: The UNT Digital Library
Exposure to diesel exhaust particles results in altered lung microbial profiles, associated with increased reactive oxygen species/reactive nitrogen species and inflammation, in C57Bl/6 wildtype mice on a high-fat diet (open access)

Exposure to diesel exhaust particles results in altered lung microbial profiles, associated with increased reactive oxygen species/reactive nitrogen species and inflammation, in C57Bl/6 wildtype mice on a high-fat diet

Article investigating if the exposure to diesel exhaust particles (DEP) can alter commensal lung microbiota, thereby promoting alterations in the lung’s immune and inflammatory responses. This article also explores if diet contributes to the alteration of the commensal lung microbiome.
Date: January 8, 2021
Creator: Daniel, Sarah; Phillippi, Danielle; Schneider, Leah J.; Nguyen, Kayla N.; Mirpuri, Julie & Lund, Amie K.
Object Type: Article
System: The UNT Digital Library
Phosphorus deprivation affects composition and spatial distribution of membrane lipids in legume nodules (open access)

Phosphorus deprivation affects composition and spatial distribution of membrane lipids in legume nodules

Article assessing membrane lipids in M. truncatula tissues using electrospray ionization–mass spectrometry. The results suggest that specific PC species may be differentially important in diverse nodule zones and cell types, and that membrane lipid remodeling during P stress is not uniform across the nodule.
Date: January 13, 2021
Creator: Dokwal, Dhiraj; Romsdahl, Trevor B.; Kunz, Daniel A.; Alonso, Ana Paula & Dickstein, Rebecca
Object Type: Article
System: The UNT Digital Library
The metabolic cost of turning right side up in the Mediterranean spur-thighed tortoise (Testudo graeca) (open access)

The metabolic cost of turning right side up in the Mediterranean spur-thighed tortoise (Testudo graeca)

Article examining the the metabolic cost of self-righting in the terrestrial Mediterranean spur-thighed tortoise using respirometry and kinematic video analysis and comparing this to the metabolic cost of locomotion at a moderate, easily sustainable speed. The results found that self-righting is, relatively, metabolically expensive and costs around two times the mass-specific power required to walk.
Date: January 10, 2022
Creator: Ewart, Heather E.; Tickle, Peter G.; Sellers, William I.; Lambertz, Markus; Crossley, Dane A., II & Codd, Jonathan R.
Object Type: Article
System: The UNT Digital Library
Using CRISPR/Cas to enhance gene expression for crop trait improvement by editing miRNA targets (open access)

Using CRISPR/Cas to enhance gene expression for crop trait improvement by editing miRNA targets

Article states that gene editing tools such as CRISPR/Cas9 are often thought of as a means to prevent gene expression; however, a more subtle and yet powerful approach is the enhancement of gene expression by precise deletion of repressor sites within a gene of interest. Authors argue that gene editing of miRNA target sites is preferable over deletion of the miRNA genes themselves, given that it avoids the pitfalls of unspecific derepression of miRNA target(s) beyond the gene of interest.
Date: January 10, 2023
Creator: Ferreira, Savio S. & Reis, Rodrigo S.
Object Type: Article
System: The UNT Digital Library
ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 1 (ADPG1) releases latent defense signals in stems with reduced lignin content (open access)

ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 1 (ADPG1) releases latent defense signals in stems with reduced lignin content

Article highlights the importance of pectin in cell wall integrity and the value of lignin modification as a tool to interrogate the informational content of plant cell walls.
Date: January 23, 2020
Creator: Gallego-Giraldo, Lina; Liu, Chang; Pose-Albacete, Sara; Pattathil, Sivakumar; Peralta, Angelo Gabriel; Young, Jenna et al.
Object Type: Article
System: The UNT Digital Library
Records of Parochlus steinenii in the Maritime Antarctic and sub-Antarctic regions (open access)

Records of Parochlus steinenii in the Maritime Antarctic and sub-Antarctic regions

This article provides the summary of the reports of the geographical distribution in the Maritime Antarctic and sub-Antarctic regions of Parochlus steinenii (Gercke, 1889) (Diptera, Chironomidae), the only flying insect occurring naturally in the Antarctic continent. This database was developed as one of the main objectives of two Chilean-funded research projects addressing understanding the effects of climate change on sub-Antarctic and Antarctic insects.
Date: January 18, 2021
Creator: Gañán, Melisa; Contador, Tamara; Rendoll, Javier; Simoes, Felipe; Pérez, Carolina; Graham, Gillian et al.
Object Type: Article
System: The UNT Digital Library
NSFDEB-NERC: Collaborative Research: Wildlife corridors: do they work and who benefits? (open access)

NSFDEB-NERC: Collaborative Research: Wildlife corridors: do they work and who benefits?

Data management plan for the grant, "NSFDEB-NERC: Collaborative Research: Wildlife corridors: do they work and who benefits?" Research on the impact of wildlife corridors using genetics as the measure of effectiveness. The study will use 20 independent landscapes to quantify how corridor traits affect gene flow, and will use non-flying mammals as focal species because they are strongly affected by fragmentation. The research team hypothesizes (1) a strong non-linear decline in success (gene flow) with corridor length, reflecting the skewed distribution of dispersal distances within species; (2) success will drop steeply as corridor width falls below a threshold, with the threshold determined by species traits; and (3) species that are bigger, are habitat specialists, or have greater dispersal abilities (relative to brain size or reproductive rate) will benefit more from corridors. Testing these hypotheses will allow generalization to a wide range of mammal species not included in this project. It will use highly flexible Random Forest models to answer the overarching question: What landscape traits (e.g., corridor width, degree of human disturbance) and species traits (mobility, affinity to particular land cover types) are associated with effective corridors?
Date: 2021-01-15/2023-12-31
Creator: Gregory, Andrew
Object Type: Text
System: The UNT Digital Library
A Small Compound Targeting Prohibitin with Potential Interest for Cognitive Deficit Rescue in Aging mice and Tau Pathology Treatment (open access)

A Small Compound Targeting Prohibitin with Potential Interest for Cognitive Deficit Rescue in Aging mice and Tau Pathology Treatment

Article describes study analyzing the effects of a new purine derivative drug, PDD005, in attenuating mechanisms involved in the pathogenesis of neurodegenerative diseases, using both in vivo and in vitro models.
Date: January 24, 2020
Creator: Guyot, Anne-Cécile; Leuxe, Charlotte; Disdier, Clémence; Oumata, Nassima; Costa, Narciso; Le Roux, Gwenaëlle et al.
Object Type: Article
System: The UNT Digital Library
Instructional Models for Course-Based Research Experience (CRE) Teaching (open access)

Instructional Models for Course-Based Research Experience (CRE) Teaching

This article presents a study that was done over a period of 3 years to explicate the instructional processes involved in teaching an undergraduate course-based research experience (CRE). The study presented here delineated a set of specific instructional practices used by active CRE instructors and modeled the relations between the use of these practices and specified outcomes. The resultant educational models should provide clarification of the ways in which the aims of CRE can be effectively achieved by instructors.
Date: January 3, 2022
Creator: Hanauer, David I.; Graham, Mark J.; Arnold, Rachel J.; Ayuk, Mary A.; Balish, Mitchell F.; Beyer, Andrea R. et al.
Object Type: Article
System: The UNT Digital Library
Eight Genome Sequences of Cluster BE1 Phages That Infect Streptomyces Species (open access)

Eight Genome Sequences of Cluster BE1 Phages That Infect Streptomyces Species

This article reports eight newly isolated Streptomyces bacteriophages recovered using either direct plating or enrichment on three Streptomyces hosts.
Date: January 11, 2018
Creator: Hughes, Lee E.; Shaffer, Christopher D.; Ware, Vassie C.; Aguayo, Issac; Aziz, Rahat M.; Bhuiyan, Swapan et al.
Object Type: Article
System: The UNT Digital Library