Are Tourists Facilitators of the Movement of Free-Ranging Dogs? (open access)

Are Tourists Facilitators of the Movement of Free-Ranging Dogs?

Article discusses how free-ranging dogs are of major conservation concern worldwide as they negatively affect wildlife. Although scientists and governmental agencies are aware of the problem and responsible pet ownership strategies are beginning to be implemented, the tourism sector must be explicitly integrated into wildlife conservation management strategies.
Date: December 16, 2022
Creator: Schüttler, Elke & Jiménez, Jaime E.
Object Type: Article
System: The UNT Digital Library
Multi-omic characterization of bifunctional peroxidase 4-coumarate 3-hydroxylase knockdown in Brachypodium distachyon provides insights into lignin modification associated pleiotropic effects (open access)

Multi-omic characterization of bifunctional peroxidase 4-coumarate 3-hydroxylase knockdown in Brachypodium distachyon provides insights into lignin modification associated pleiotropic effects

Article discusses how a bifunctional peroxidase enzyme, 4-coumarate 3-hydroxylase (C3H/APX), provides a parallel route to the shikimate shunt pathway for the conversion of 4-coumarate to caffeate in the early steps of lignin biosynthesis. Here, a multi-omic approach was used to characterize molecular changes resulting from C3H/APX-KD associated lignin modification and negative growth phenotype in Brachypodium distachyon.
Date: September 28, 2022
Creator: Shrestha, Him K.; Fichman, Yosef; Engle, Nancy L.; Tschaplinski, Timothy J.; Mittler, Ron; Dixon, R. A. et al.
Object Type: Article
System: The UNT Digital Library
Transcriptomic profiling of miR-203a inhibitor and miR-34b-injected zebrafish (Danio rerio) validates oil-induced neurological, cardiovascular and eye toxicity response pathways (open access)

Transcriptomic profiling of miR-203a inhibitor and miR-34b-injected zebrafish (Danio rerio) validates oil-induced neurological, cardiovascular and eye toxicity response pathways

Article discusses how the global sequencing of microRNA (miRNA; miR) and integration to downstream mRNA expression profiles in early life stages (ELS) of fish following exposure to crude oil determined consistently dysregulated miRNAs regardless of the oil source or fish species. The overlay of differentially expressed miRNAs and mRNAs into in silico software determined that the key roles of these miRNAs were predicted to be involved in cardiovascular, neurological and visually-mediated pathways.
Date: November 21, 2022
Creator: Maguson, Jason T.; Leads, Rachel R.; McGruer, Victoria; Qian, Le; Tanabe, Philip; Roberts, Aaron P. et al.
Object Type: Article
System: The UNT Digital Library
Analysis of transcribed sequences from young and mature zebrafish thrombocytes (open access)

Analysis of transcribed sequences from young and mature zebrafish thrombocytes

Article studying thrombocyte function and development in adult zebrafish. The authors performed single-cell RNA sequencing of the young and mature zebrafish thrombocytes and compared the two datasets for young and mature thrombocyte transcripts.
Date: September 19, 2021
Creator: Fallatah, Weam; De, Ronika; Burks, David J.; Azad, Rajeev K. & Jagadeeswaran, Pudur
Object Type: Article
System: The UNT Digital Library
The Arabidopsis gene co-expression network (open access)

The Arabidopsis gene co-expression network

Article presents an Arabidopsis gene co-expression network constructed using RNA-Seq datasets, which will serve as a useful resource for the Arabidopsis research community to gain insights into Arabidopsis gene interactions and functions.
Date: April 26, 2022
Creator: Burks, David J.; Sengupta, Soham; De, Ronika; Mittler, Ron & Azad, Rajeev K.
Object Type: Article
System: The UNT Digital Library
Habitat amount or landscape configuration: Emerging HotSpot analysis reveals the importance of habitat amount for a grassland bird in South Dakota (open access)

Habitat amount or landscape configuration: Emerging HotSpot analysis reveals the importance of habitat amount for a grassland bird in South Dakota

The authors of the article used pheasants (Phasianus colchicus) across South Dakota, USA as a model species to identify environmental factors driving spatiotemporal variation in population productivity. They found that the amount of grassland at a local spatial scale was the primary factor influencing an area being a HotSpot.
Date: September 26, 2022
Creator: Harsh, Sprih; Lonsinger, Robert C. & Gregory, Andrew
Object Type: Article
System: The UNT Digital Library
Sustainable nutrition: a spatially explicit modeling approach for urban land use planning (open access)

Sustainable nutrition: a spatially explicit modeling approach for urban land use planning

Article describes how rapid urbanization has influenced the transformation of local and global food systems, altering the availability, access to, and distribution of healthy food. Micronutrient deficiency and hunger have been exacerbated worldwide. The author's research proposes a simulation strategy to evaluate the impact of agricultural land use and crop choices on nutritional production in rapidly growing urban areas.
Date: October 14, 2022
Creator: Torres, Angélica Torres; Tiwari, Chetan & Atkinson, Samuel F.
Object Type: Article
System: The UNT Digital Library
The complexities of proanthocyanidin biosynthesis and its regulation in plants (open access)

The complexities of proanthocyanidin biosynthesis and its regulation in plants

Article describes how proanthocyanidins (PAs) are natural flavan-3-ol polymers that contribute protection to plants under biotic and abiotic stress, benefits to human health, and bitterness and astringency to food products. This review extends the conventional understanding with recent findings that provide new insights to address lingering questions and focus strategies for manipulating PA traits in plants.
Date: November 26, 2022
Creator: Yu, Keji; Song, Yushuang; Lin, Jinxing & Dixon, R. A.
Object Type: Article
System: The UNT Digital Library
Fatty acid amide hydrolase and 9-lipoxygenase  modulate cotton seedling growth by ethanolamide  oxylipin levels (open access)

Fatty acid amide hydrolase and 9-lipoxygenase modulate cotton seedling growth by ethanolamide oxylipin levels

Article asserts that polyunsaturated N-acylethanolamines (NAEs) can be hydrolyzed by fatty acid amide hydrolase (FAAH) or oxidized by lipoxygenase (LOX). Altogether, the authors conclude that the growth of cotton seedlings involves fine-tuning of 9-NAE-HOD levels via FAAH-mediated hydrolysis and LOX-mediated production, expanding the mechanistic understanding of plant growth modulation by NAE oxylipins to a perennial crop species.
Date: December 6, 2022
Creator: Gaguancela-Arias, Omar; Aziz, Mina & Chapman, Kent Dean
Object Type: Article
System: The UNT Digital Library
Identification of Pueraria spp. through DNA barcoding and comparative transcriptomics (open access)

Identification of Pueraria spp. through DNA barcoding and comparative transcriptomics

This article presents research where various kudzu accessions were analyzed through barcoding and comparative transcriptomics, generating tools for identification and molecular pathway analysis.
Date: January 3, 2022
Creator: Adolfo, Laci M.; Rao, Xiaolan & Dixon, R. A.
Object Type: Article
System: The UNT Digital Library
Overexpression of phospholipid: diacylglycerol acyltransferase in Brassica napus results in changes in lipid metabolism and oil accumulation (open access)

Overexpression of phospholipid: diacylglycerol acyltransferase in Brassica napus results in changes in lipid metabolism and oil accumulation

Article studying the regulation of lipid metabolism in oilseeds.
Date: March 31, 2022
Creator: Fenyk, Stepan; Woodfield, Helen K.; Romsdahl, Trevor B.; Wallington, Emma J.; Bates, Ruth E.; Fell, David A. et al.
Object Type: Article
System: The UNT Digital Library
Mediterranean Spur-Thighed Tortoises (Testudo graeca) Have Optimal Speeds at Which They Can Minimise the Metabolic Cost of Transport, on a Treadmill (open access)

Mediterranean Spur-Thighed Tortoises (Testudo graeca) Have Optimal Speeds at Which They Can Minimise the Metabolic Cost of Transport, on a Treadmill

Article experimentally quantifies the metabolic cost of transport in Mediterranean spur-thighed tortoises walking on a treadmill while also quantifying the kinematics of their movement. Results found that tortoises move more efficiently than predicted and presents the first data demonstrating a curvilinear cost of transport over their speed range. The authors conclude that tortoises have an optimum speed at which they move to minimise their metabolic cost of locomotion.
Date: July 13, 2022
Creator: Ewart, Heather; Tickle, Peter; Nudds, Robert; Sellers, William; Crossley, Dane A., II & Codd, Jonathan
Object Type: Article
System: The UNT Digital Library
Instructional Models for Course-Based Research Experience (CRE) Teaching (open access)

Instructional Models for Course-Based Research Experience (CRE) Teaching

This article presents a study that was done over a period of 3 years to explicate the instructional processes involved in teaching an undergraduate course-based research experience (CRE). The study presented here delineated a set of specific instructional practices used by active CRE instructors and modeled the relations between the use of these practices and specified outcomes. The resultant educational models should provide clarification of the ways in which the aims of CRE can be effectively achieved by instructors.
Date: January 3, 2022
Creator: Hanauer, David I.; Graham, Mark J.; Arnold, Rachel J.; Ayuk, Mary A.; Balish, Mitchell F.; Beyer, Andrea R. et al.
Object Type: Article
System: The UNT Digital Library
Transcriptional Programs and Regulators Underlying Age-Dependent and Dark-Induced Senescence in Medicago truncatula (open access)

Transcriptional Programs and Regulators Underlying Age-Dependent and Dark-Induced Senescence in Medicago truncatula

Article presents a study that reveals the dynamics of transcriptomic responses to age- and dark-induced senescence in M. truncatula and identifies senescence-associated TFs that are attractive targets for future work to control senescence in forage legumes.
Date: May 6, 2022
Creator: Mahmood, Kashif; Torres-Jerez, Ivone; Krom, Nick; Liu, Wei & Udvardi, Michael K.
Object Type: Article
System: The UNT Digital Library
Probiotics Function as Immunomodulators in the Intestine in C57Bl/6 Male Mice Exposed to Inhaled Diesel Exhaust Particles on a High-Fat Diet (open access)

Probiotics Function as Immunomodulators in the Intestine in C57Bl/6 Male Mice Exposed to Inhaled Diesel Exhaust Particles on a High-Fat Diet

Article investigating the role of diesel exhaust particles (DEP) in conjunction with a high-fat (HF) diet on intestinal integrity and inflammation.
Date: March 15, 2022
Creator: Phillippi, Danielle T.; Daniel, Sarah; Nguyen, Kayla N.; Penaredondo, Bea Angella & Lund, Amie K.
Object Type: Article
System: The UNT Digital Library
Elucidating Cyclic Fatty Acid Biosynthesis and Compartmentalization to Improve Cottonseed Value (open access)

Elucidating Cyclic Fatty Acid Biosynthesis and Compartmentalization to Improve Cottonseed Value

Data management plan for the grant "Elucidating Cyclic Fatty Acid Biosynthesis and Compartmentalization to Improve Cottonseed Value." Cotton is an important oilseed crop in the U.S. economy. Cotton seed and other vegetative tissues produce unusual chemicals called cyclic fatty acids that have wide-ranging potential uses from high-value industrial properties to nutrition-oriented uses. This project focuses on identifying genes that contribute to the production and storage of these high value bioproducts.
Date: 2022-10-15/2025-10-14
Creator: Horn, Patrick J.
Object Type: Text
System: The UNT Digital Library
Cavity surface residues of PAD4 and SAG101 contribute to EDS1 dimer signaling specificity in plant immunity (open access)

Cavity surface residues of PAD4 and SAG101 contribute to EDS1 dimer signaling specificity in plant immunity

Article investigating whether the EPDs of PAD4 and SAG101 contribute to EDS1 dimer functions.
Date: October 27, 2021
Creator: Dongus, Joram A.; Bhandari, Deepak D.; Penner, Eva; Lapin, Dmitry; Stolze, Sara C.; Harzen, Anne et al.
Object Type: Article
System: The UNT Digital Library
A conserved oxalyl-coenzyme A decarboxylase in oxalate catabolism (open access)

A conserved oxalyl-coenzyme A decarboxylase in oxalate catabolism

Article presents research on oxalate catabolism in plants.
Date: May 5, 2022
Creator: Cheng, Ninghui; Paris, Vincent; Rao, Xiaolan; Wang, Xiaoqiang & Nakata, Paul A.
Object Type: Article
System: The UNT Digital Library
Developmental changes in lignin composition are driven by both monolignol supply and laccase specificity (open access)

Developmental changes in lignin composition are driven by both monolignol supply and laccase specificity

Article proposes a model in which, during C-lignin biosynthesis, caffeyl alcohol noncompetitively inhibits oxidation of coniferyl alcohol by cell wall laccases, a process that might limit movement of coniferyl alcohol to the apoplast.
Date: October 13, 2021
Creator: Zhou, Chunliu; Wang, Xin; Docampo-Palacios, Maite; Sanders, Brian C.; Engle, Nancy L.; Tschaplinski, Timothy J. et al.
Object Type: Article
System: The UNT Digital Library
The metabolic cost of turning right side up in the Mediterranean spur-thighed tortoise (Testudo graeca) (open access)

The metabolic cost of turning right side up in the Mediterranean spur-thighed tortoise (Testudo graeca)

Article examining the the metabolic cost of self-righting in the terrestrial Mediterranean spur-thighed tortoise using respirometry and kinematic video analysis and comparing this to the metabolic cost of locomotion at a moderate, easily sustainable speed. The results found that self-righting is, relatively, metabolically expensive and costs around two times the mass-specific power required to walk.
Date: January 10, 2022
Creator: Ewart, Heather E.; Tickle, Peter G.; Sellers, William I.; Lambertz, Markus; Crossley, Dane A., II & Codd, Jonathan R.
Object Type: Article
System: The UNT Digital Library
Expression of AtWRI1 and AtDGAT1 during soybean embryo development influences oil and carbohydrate metabolism (open access)

Expression of AtWRI1 and AtDGAT1 during soybean embryo development influences oil and carbohydrate metabolism

Article evaluating the metabolic and transcriptional responses to AtWRI1 and AtDGAT1 expression in soybean seeds.
Date: March 20, 2022
Creator: Arias, Cintia Lucía; Quach, Truyen; Huynh, Tu; Nguyen, Hanh; Moretti, Ademar; Shi, Yu et al.
Object Type: Article
System: The UNT Digital Library
Air pollution and endocrine disruptors induce human microbiome imbalances: A systematic review of recent evidence and possible biological mechanisms (open access)

Air pollution and endocrine disruptors induce human microbiome imbalances: A systematic review of recent evidence and possible biological mechanisms

Article presents a systematic review examining the scientific evidence on the effect of environmental toxicants, air pollutants and endocrine disruptors (EDCs), on compositional and diversity of human microbiota.
Date: February 11, 2022
Creator: Mousavi, Sayed Esmaeil; Delgado-Saborit, Juana Maria; Adivi, Anna; Pauwels, Sara & Godderis, Lode
Object Type: Article
System: The UNT Digital Library
Sustaining Human Nutrition in an Increasingly Urban World (open access)

Sustaining Human Nutrition in an Increasingly Urban World

This article proposes an urban nutrition (UN) extension to the previously published urban ecological economic system. The proposed extension can be used by decision makers worldwide to evaluate how landscape configurations and agricultural production systems affect the nutritional needs of the local population while fostering sustainable practices.
Date: June 22, 2022
Creator: Torres, Angélica Valencia; Tiwari, Chetan & Atkinson, Samuel F.
Object Type: Article
System: The UNT Digital Library
The flexibility of proanthocyanidin biosynthesis in plants (open access)

The flexibility of proanthocyanidin biosynthesis in plants

Article presents research that explores proanthocyanidin (PA) biosynthesis routes in plants. The data suggests that different species have evolved different routes for PA biosynthesis.
Date: June 13, 2022
Creator: Lu, Nan; Jun, Ji Hyung; Liu, Chenggang & Dixon, R. A.
Object Type: Article
System: The UNT Digital Library