The Arabidopsis PAD4 Lipase-Like Domain Is Sufficient for Resistance to Green Peach Aphid (open access)

The Arabidopsis PAD4 Lipase-Like Domain Is Sufficient for Resistance to Green Peach Aphid

Article exploring PAD4 functions in plant defense by expressing the N-terminal PAD4 lipase-like domain (PAD4ᴸᴸᴰ) without its C-terminal EDS1-PAD4 (EP) domain. The authors show that transgenic expression of PAD4ᴸᴸᴰ in Arabidopsis is sufficient for limiting GPA infestation but not for conferring basal and effector-triggered pathogen immunity. This suggests that the C-terminal PAD4 EP domain is necessary for EDS1-dependent immune functions but is dispensable for aphid resistance. Moreover, PAD4ᴸᴸᴰ is not sufficient to interact with EDS1, indicating the PAD4-EP domain is required for stable heterodimerization. These data provide molecular evidence that PAD4 has domain-specific functions.
Date: December 27, 2019
Creator: Dongus, Joram A.; Bhandari, Deepak D.; Patel, Monika; Archer, Lani; Dijkgraaf, Lucas; Shah, Jyoti et al.
System: The UNT Digital Library
Hypoxic level and duration differentially affect embryonic organ system development of the chicken (Gallus gallus) (open access)

Hypoxic level and duration differentially affect embryonic organ system development of the chicken (Gallus gallus)

This article investigates how key organ systems are affected by hypoxia. The results indicated that either modest hypoxia (15% O2) throughout development, or hypoxia at any level during the late stages (d 11 to 18), increased the heart and chorioallantoic membrane weight, which partly compensated for the detrimental effects of hypoxia on embryonic development.
Date: December 11, 2019
Creator: Zhang, H. & Burggren, Warren W.
System: The UNT Digital Library
Retinal oxygen supply shaped the functional evolution of the vertebrate eye (open access)

Retinal oxygen supply shaped the functional evolution of the vertebrate eye

Article explores the hypothesis that oxygen diffusion limited the evolution of retinal morphology by reconstructing the evolution of retinal thickness and the various mechanisms for retinal oxygen supply, including capillarization and acid-induced haemoglobin oxygen unloading.
Date: December 10, 2019
Creator: Damsgaard, Christian; Lauridsen, Henrik; Funder, Anette MD; Thomsen, Jesper S.; Desvignes, Thomas; Crossley, Dane A., II et al.
System: The UNT Digital Library
Lignin biosynthesis: old roads revisited and new roads explored (open access)

Lignin biosynthesis: old roads revisited and new roads explored

Article presents several hypothetical models to illustrate information about lignin and the lignification process in plants.
Date: December 4, 2019
Creator: Dixon, R. A. & Barros, Jaime
System: The UNT Digital Library
Muconic acid production from methane using rationally-engineered methanotrophic biocatalysts (open access)

Muconic acid production from methane using rationally-engineered methanotrophic biocatalysts

Article demonstrates bioconversion of methane to muconic acid, a dicarboxylic acid that can be upgraded to an array of platform chemicals, by three gammaproteobacterial methanotrophs.
Date: November 25, 2019
Creator: Henard, Calvin A.; Akberdin, Ilya R.; Kalyuzhnaya, Marina G. & Guarnieri, Michael T.
System: The UNT Digital Library
The future of legume genetic data resources: Challenges, opportunities, and priorities (open access)

The future of legume genetic data resources: Challenges, opportunities, and priorities

This article is a commentary on the future of legume genetic data resources and summarizes the workshop held in March of 2019 by the Legume Genomic Data Working Group that addressed questions of data resources and priorities for legumes.
Date: August 5, 2019
Creator: Legume Genomic Data Working Group
System: The UNT Digital Library
Embryonic developmental oxygen preconditions cardiovascular functional response to acute hypoxic exposure and maximal β-adrenergic stimulation of anesthetized juvenile American alligators (Alligator mississippiensis) (open access)

Embryonic developmental oxygen preconditions cardiovascular functional response to acute hypoxic exposure and maximal β-adrenergic stimulation of anesthetized juvenile American alligators (Alligator mississippiensis)

Article investigating the effect of embryonic hypoxia on the cardiovascular phenotype of 4-year-old American alligators (Alligator mississippiensis). The findings indicate that embryonic hypoxia in crocodilians alters the cardiovascular phenotype, changing the juvenile response to acute hypoxia and β-adrenergic stimulation.
Date: January 26, 2018
Creator: Smith, Brandt R.; Crossley, Janna; Elsey, Ruth M.; Hicks, James W. & Crossley, Dane A., II
System: The UNT Digital Library
Celebrating 20 Years of Genetic Discoveries in Legume Nodulation and Symbiotic Nitrogen Fixation (open access)

Celebrating 20 Years of Genetic Discoveries in Legume Nodulation and Symbiotic Nitrogen Fixation

This article is a review cataloging and contextualizing all of the plant genes currently known to be required for SNF in two model legume species, Medicago truncatula and Lotus japonicus, and two crop species, Glycine max (soybean) and Phaseolus vulgaris (common bean). The authors also briefly consider the future of SNF genetics in the era of pan-genomics and genome editing.
Date: October 24, 2019
Creator: Roy, Sonali; Liu, Wei; Nandety, Raja Sekhar; Crook, Ashley; Mysore, Kirankumar S.; Pislariu, Catalina I. et al.
System: The UNT Digital Library
One thousand plant transcriptomes and the phylogenomics of green plants (open access)

One thousand plant transcriptomes and the phylogenomics of green plants

Article describes the results of the One Thousand Plant Transcriptomes Initiative's efforts to sequence the vegetative transcriptomes of 1,124 species that span the diversity of plants in a broad sense (Archaeplastida), including green plants (Viridiplantae), glaucophytes (Glaucophyta) and red algae (Rhodophyta).
Date: October 23, 2019
Creator: One Thousand Plant Transcriptomes Initiative
System: The UNT Digital Library
Simultaneous electrophysiological and morphological assessment of functional damage to neural networks in vitro after 30–300 g impacts (open access)

Simultaneous electrophysiological and morphological assessment of functional damage to neural networks in vitro after 30–300 g impacts

Article describes studying aiming to investigate and quantify network activity changes after simulated concussions in vitro and therewith develop a platform for simultaneous and direct observations of morphological and electrophysiological changes in neural networks.
Date: October 18, 2019
Creator: Rogers, Edmond A. & Gross, Guenter W.
System: The UNT Digital Library
Jasmonic Acid Is Required for Plant Acclimation to a Combination of High Light and Heat Stress (open access)

Jasmonic Acid Is Required for Plant Acclimation to a Combination of High Light and Heat Stress

Article studying the responses of Arabidopsis (Arabidopsis thaliana) plants to a combination of high light and heat stress (HL+HS) conditions. The study reveals that Jasmonic acid (JA) plays an important role in the acclimation of plants to a combination of HL+HS.
Date: October 8, 2019
Creator: Sengupta, Soham; Azad, Rajeev K.; Balfagón, Damián; Gómez-Cadenas, Aurelio; Fritschi, Felix B.; Mittler, Ron et al.
System: The UNT Digital Library
IslandCafe: Compositional Anomaly and Feature Enrichment Assessment for Delineation of Genomic Islands (open access)

IslandCafe: Compositional Anomaly and Feature Enrichment Assessment for Delineation of Genomic Islands

Article discusses IslandCafe, a proposed method for genomic island detection.
Date: October 1, 2019
Creator: Jani, Mehul & Azad, Rajeev K.
System: The UNT Digital Library
Improved Campephiline detection: An experiment conducted with the Magellanic Woodpecker (open access)

Improved Campephiline detection: An experiment conducted with the Magellanic Woodpecker

Article describes a study which tried to determine which of three methods (useing a drumming device to simulate a double‐knock (i.e., territorial acoustical signal), broadcasting a territorial call, or passively listening) best results in a detection of Magellanic Woodpeckers (Campephilus magellanicus ), and if weather variables influence detection probability.
Date: September 27, 2019
Creator: Wynia, Amy L.; Rolland, Virginie & Jiménez, Jaime E.
System: The UNT Digital Library
The osmorespiratory compromise in the euryhaline killifish: water regulation during hypoxia (open access)

The osmorespiratory compromise in the euryhaline killifish: water regulation during hypoxia

Article studying water regulation during hypoxia in euryhaline killifish.
Date: September 24, 2019
Creator: Mager, Edward M.; Wood, Chris M.; Ruhr, Ilan M.; Schauer, Kevin L.; Wang, Yadong; McDonald, M. Danielle et al.
System: The UNT Digital Library
A Combined Metabolomics and Fluxomics Analysis Identifies Steps Limiting Oil Synthesis in Maize Embryos (open access)

A Combined Metabolomics and Fluxomics Analysis Identifies Steps Limiting Oil Synthesis in Maize Embryos

Article comparing the metabolism of embryos from two different maize lines, Alex and LH59, to test the hypothesis that directly changing their carbon metabolism may be the key to increasing oil content in maize kernels without affecting yield.
Date: September 17, 2019
Creator: Alonso, Ana Paula; Cocuron, Jean-Christophe; Koubaa, Mohamed; Kimmelfield, Rebecca & Ross, Zacchary
System: The UNT Digital Library
Parental stressor exposure simultaneously conveys both adaptive and maladaptive larval phenotypes through epigenetic inheritance in the zebrafish (Danio rerio) (open access)

Parental stressor exposure simultaneously conveys both adaptive and maladaptive larval phenotypes through epigenetic inheritance in the zebrafish (Danio rerio)

This article is a study using crude oil as an example of an environmental stressor in adult zebrafish. The offspring obtained were then assessed for transgenerational epigenetic transfer of oil-induced phenotypes. The authors conclude that epigenetic transgenerational inheritance can lead to an immediate and simultaneous inheritance of both beneficial and maladaptive traits in a large proportion of the F1 larvae. The adaptive responses may help fish populations survive when facing transient environmental stressors.
Date: September 5, 2019
Creator: Bautista, Naim M. & Burggren, Warren W.
System: The UNT Digital Library
Regulation of blood flow in the pulmonary and systemic circuits during submerged swimming in common snapping turtle (Chelydra serpentina) (open access)

Regulation of blood flow in the pulmonary and systemic circuits during submerged swimming in common snapping turtle (Chelydra serpentina)

This article is a study investigating the blood flow patterns and heart rate in surfacing and during graded, submerged swimming activity in common snapping turtles. The effects of beta-adrenergic and cholinergic receptor blockade on blood flow and heart rate during these activities are also studied.
Date: August 16, 2019
Creator: Reynolds Kirby, Amanda; Smith, Brandt R. & Crossley, Dane A., II
System: The UNT Digital Library
p63 and SOX2 Dictate Glucose Reliance and Metabolic Vulnerabilities in Squamous Cell Carcinomas (open access)

p63 and SOX2 Dictate Glucose Reliance and Metabolic Vulnerabilities in Squamous Cell Carcinomas

Article identifies exceptional glucose reliance among squamous cell carcinomas (SCC)s dictated by hyperactive GLUT1-mediated glucose influx.
Date: August 13, 2019
Creator: Hsieh, Meng-Hsiung; Choe, Joshua H.; Gadhvi, Jashkaran; Kim, Yoon Jung; Arguez, Marcus A.; Palmer, Madison et al.
System: The UNT Digital Library
LBD29-Involved Auxin Signaling Represses NAC Master Regulators and Fiber Wall Biosynthesis (open access)

LBD29-Involved Auxin Signaling Represses NAC Master Regulators and Fiber Wall Biosynthesis

This article uses a large-scale mutant screening to identify a dominant activation-tagging mutant, fiberless-d (fls-d), showing defective SCW development in stem fibers, similar to that of the nac secondary wall thickening promoting factor1-1 (nst1-1)nst3-3 double mutant. The results demonstrate auxin is upstream of LBD29 in repressing NAC master regulators, and therefore sheds new light on the regulation of SCW biosynthesis in Arabidopsis.
Date: August 3, 2019
Creator: Lee, Kwang-Hee; Du, Qian; Zhuo, Chunliu; Qi, Liying & Wang, Huanzhong
System: The UNT Digital Library
Altitudinal gradients in Magellanic sub-Antarctic lagoons: the effect of elevation on freshwater macroinvertebrate diversity and distribution (open access)

Altitudinal gradients in Magellanic sub-Antarctic lagoons: the effect of elevation on freshwater macroinvertebrate diversity and distribution

In this article, freshwater macroinvertebrate diversity associated with lakes and ponds along the altitudinal gradient of a Magellanic sub-Antarctic watershed are assessed. A monotonic decline in species richness was observed with increasing elevation, with simpler and more even community composition at higher altitude. This pattern differs from the mid-peak trend found in streams of the same watershed. Functional feeding group structure also diminished with increasing elevation.
Date: July 29, 2019
Creator: Rendoll Cárcamo, Javier; Contador, Tamara; Gañán, Melisa; Pérez Troncoso, Carolina; Maldonado Márquez, Alan; Convey, Peter et al.
System: The UNT Digital Library
Ectopic Defense Gene Expression Is Associated with Growth Defects in Medicago truncatula Lignin Pathway Mutants (open access)

Ectopic Defense Gene Expression Is Associated with Growth Defects in Medicago truncatula Lignin Pathway Mutants

Article analyzing transposon insertion mutants resulting in independent loss of function of five enzymes of the monolignol pathway, as well as one double mutant, in the model legume Medicago truncatula, to address whether a common mechanism linking lignin modification with perturbations in plant growth and development exists.
Date: July 9, 2019
Creator: Ha, Chan Man; Fine, Dennis; Bhatia, Anil; Rao, Xiaolan; Martin, Madhavi Z.; Engle, Nancy L. et al.
System: The UNT Digital Library
Sarcoplasmic reticulum Ca²⁺-ATPase (SERCA) activity during the transition to endothermy in an altricial bird (open access)

Sarcoplasmic reticulum Ca²⁺-ATPase (SERCA) activity during the transition to endothermy in an altricial bird

Article describes SERCA activity in the pectoralis muscle and heart ventricle of red-winged blackbird (Agelaius phoeniceus) nestlings, fledglings and adults. Additionally, using a diet manipulation, the authors tested the hypothesis that muscle SERCA activity is affected by dietary fatty acid composition, as has been shown in some previous studies.
Date: June 28, 2019
Creator: Price, Edwin R.; Sirsat, Tushar S.; Sirsat, Sarah K. G. & Dzialowski, Edward M. (Edward Michael)
System: The UNT Digital Library
Hypoxia-induced reprogramming of the cardiac phenotype in American alligators (Alligator mississippiensis) revealed by quantitative proteomics (open access)

Hypoxia-induced reprogramming of the cardiac phenotype in American alligators (Alligator mississippiensis) revealed by quantitative proteomics

Article describes study which tested if targeted and persistent changes in steady-state protein expression underlie this hypoxic heart phenotype, using isobaric tags for relative and absolute quantitation (iTRAQ) proteomics.
Date: June 13, 2019
Creator: Alderman, Sarah L.; Crossley, Dane A., II; Elsey, Ruth M. & Gillis, Todd E.
System: The UNT Digital Library
Developmental plasticity of cardiac anoxia-tolerance in juvenile common snapping turtles ( Chelydra serpentina) (open access)

Developmental plasticity of cardiac anoxia-tolerance in juvenile common snapping turtles ( Chelydra serpentina)

Article describes study which tested the hypothesis that developmental hypoxia alters cardiomyocyte physiology in a manner that protects the heart from hypoxic stress.
Date: June 6, 2019
Creator: Ruhr, Ilan M.; McCourty, Heather; Bajjig, Afaf; Crossley, Dane A., II; Shiels, Holly A. & Galli, Gina L. J.
System: The UNT Digital Library