Evaluation of a Chicken 600K SNP genotyping array in non-model species of grouse (open access)

Evaluation of a Chicken 600K SNP genotyping array in non-model species of grouse

This article tested the cross-species application of the Affymetrix 600K Chicken SNP array in five species of North American prairie grouse (Centrocercus and Tympanuchus genera). This study study provided evidence for successful cross-species application of the chicken SNP array in grouse which diverged ca. 37 mya from the chicken lineage. As far as the authors are concerned, this is the first reported application of a SNP array in non-passerine birds, and it demonstrates the feasibility of using commercial SNP arrays in research on non-model bird species.
Date: October 19, 2018
Creator: Minias, Piotr; Dunn, Peter O.; Whittingham, Linda A.; Johnson, Jeff A. & Oyler-McCance, Sara
Object Type: Article
System: The UNT Digital Library
Opposing effects of MYZUS PERSICAE-INDUCED LIPASE 1 and jasmonic acid influence the outcome of Arabidopsis thalianaā€“Fusarium graminearum interaction (open access)

Opposing effects of MYZUS PERSICAE-INDUCED LIPASE 1 and jasmonic acid influence the outcome of Arabidopsis thalianaā€“Fusarium graminearum interaction

Article presents research that shows Arabidopsis MYZUS PERSICAE-INDUCED LIPASE 1 (MPL1), via its influence on limiting jasmonic acid (JA) accumulation, restricts Fusarium graminearum (Fg) infection.
Date: April 9, 2022
Creator: Alam, Syeda T.; Sarowar, Sujon; Mondal, Hossain A.; Makandar, Ragiba; Chowdhury, Zulkarnain; Louis, Joe et al.
Object Type: Article
System: The UNT Digital Library
Specific Changes in Arabidopsis thaliana Rosette Lipids during Freezing Can Be Associated with Freezing Tolerance (open access)

Specific Changes in Arabidopsis thaliana Rosette Lipids during Freezing Can Be Associated with Freezing Tolerance

This article explores the ability of Arabidopsis thaliana to recover after exposure to freezing temperatures.
Date: March 17, 2022
Creator: Vu, Hieu Sy; Shiva, Sunitha; Samarakoon, Thilani; Li, Maoyin; Sarowar, Sujon; Roth, Mary R. et al.
Object Type: Article
System: The UNT Digital Library
Targeted Metabolic Profiles of the Leaves and Xylem Sap of Two Sugarcane Genotypes Infected with the Vascular Bacterial Pathogen Leifsonia xyli subsp. xyli (open access)

Targeted Metabolic Profiles of the Leaves and Xylem Sap of Two Sugarcane Genotypes Infected with the Vascular Bacterial Pathogen Leifsonia xyli subsp. xyli

This article identifies discriminant metabolites between a resistant (R) and a susceptible (S) sugarcane variety at the early stages of pathogen colonization (30 and 120 days after inoculationā€”DAI) by untargeted and targeted metabolomics of leaves and xylem sap using gas chromatography-mass spectrometry (GC-MS) and liquid chromatography-tandem mass spectrometry (LC-MS/MS). The data represent a valuable resource of potential biomarkers for metabolite-assisted selection of resistant varieties to RS.
Date: April 12, 2021
Creator: Castro-Moretti, Fernanda R.; Cocuron, Jean-Christophe; Cia, Maria C.; Cataldi, Thais R.; Labate, Carlos A.; Alonso, Ana Paula et al.
Object Type: Article
System: The UNT Digital Library
Contribution of active atrial contraction to cardiac output in anesthetized American alligators (Alligator mississippiensis) (open access)

Contribution of active atrial contraction to cardiac output in anesthetized American alligators (Alligator mississippiensis)

Article describes study which investigated the importance of atrial contraction in filling of the ventricle in American alligators (Alligator mississippiensis) by bypassing both atria (with the use of ligatures to prevent atrial filling) and measuring the resultant effects on cardiac output in anesthetized animals.
Date: April 30, 2018
Creator: Williams, Joyce E.; Crossley, Janna; Elsey, Ruth M.; Wang, Tobias & Crossley, Dane A., II
Object Type: Article
System: The UNT Digital Library
Preferential intracellular pH regulation is a common trait amongst fishes exposed to high environmental CO2 (open access)

Preferential intracellular pH regulation is a common trait amongst fishes exposed to high environmental CO2

Article testing the hypothesis that preferential pHi regulation is a widespread strategy of acidā€“base regulation among fish by measuring pHi regulation in 10 different fish species that are broadly phylogenetically separated, spanning six orders, eight families and 10 genera.
Date: June 17, 2019
Creator: Shartau, R. B.; Baker, D. W.; Harter, T. S.; Aboagye, D. L.; Allen, P. J.; Val, A. L. et al.
Object Type: Article
System: The UNT Digital Library
Does the left aorta provide proton-rich blood to the gut when crocodilians digest a meal? (open access)

Does the left aorta provide proton-rich blood to the gut when crocodilians digest a meal?

Article measuring blood parameters in the left aortae and atria of crocodilians. The findings do not support the hypothesis that a Rā€“L shunt serves to deliver CO2 for the gastrointestinal system after feeding in crocodilians.
Date: February 4, 2019
Creator: Conner, Justin L.; Crossley, Janna; Elsey, Ruth M.; Nelson, Derek; Wang, Tobias & Crossley, Dane A., II
Object Type: Article
System: The UNT Digital Library
Lipoxygenase-mediated Oxidation of Polyunsaturated N-Acylethanolamines in Arabidopsis (open access)

Lipoxygenase-mediated Oxidation of Polyunsaturated N-Acylethanolamines in Arabidopsis

Article hypothesizing that lipoxygenase (LOX) participated in the metabolism of PU-NAEs through the formation of NAE-oxylipins. The data suggests that Arabidopsis LOXs indeed compete with FAAH to metabolize PU-NAEs during seedling establishment. Identification of endogenous amide-conjugated oxylipins suggests potential significance of these metabolites in vivo, and FAAH mutants may offer opportunities to address this in the future.
Date: April 29, 2011
Creator: Kilaru, Aruna; Herrfurth, Cornelia; Keereetaweep, Jantana; Hornung, Ellen; Venables, Barney J.; Feussner, Ivo et al.
Object Type: Article
System: The UNT Digital Library
The Transcriptional Co-activator MBF1c Is a Key Regulator of Thermotolerance in Arabidopsis thaliana (open access)

The Transcriptional Co-activator MBF1c Is a Key Regulator of Thermotolerance in Arabidopsis thaliana

Article reporting that the highly conserved transcriptional co-activator, MBF1c (multiprotein bridging factor 1c), is a key regulator of thermotolerance in Arabidopsis thaliana. Results provide evidence for the existence of a tightly coordinated heat stress-response network, involving trehalose-, SA-, and ethylene-signaling pathways, that is under the control of MBF1c.
Date: April 4, 2008
Creator: Suzuki, Nobuhiro; Bajad, Sunil; Shuman, Joel; Shulaev, Vladimir & Mittler, Ron
Object Type: Article
System: The UNT Digital Library
Underlying Ossification Phenotype in a Murine Model of Metastatic Synovial Sarcoma (open access)

Underlying Ossification Phenotype in a Murine Model of Metastatic Synovial Sarcoma

This article presents the analysis of genetic mouse models of synovial sarcoma to determine the extent of ossification in the tumors and its relationship with morbidity. The authors noted higher ossification within their metastatic mouse model of synovial sarcoma. Their conclusion is that both metastasis and ossification are dependent on time, but that they are independent of one another.
Date: April 10, 2020
Creator: Kirkham, Matthew; Kalivas, Austen; Fatema, Kaniz; Luelling, Sarah; Dubansky, Brooke H.; Dubansky, Benjamin et al.
Object Type: Article
System: The UNT Digital Library
Biocultural Calendars Across Four Ethnolinguistic Communities in Southwestern South America (open access)

Biocultural Calendars Across Four Ethnolinguistic Communities in Southwestern South America

Article describes how, since the mid-20th century, the so-called Great Acceleration has amplified processes of ecosystem degradation, extinction of biological species, displacement of local peoples, losses of languages, and cultural diversity. The authors examine cultural practices and socio-environmental changes across four contrasting ethnolinguistic communities in southwestern South America, from southern to northern Chile along a marked climatic gradient to show the broad application of the concept of biocultural calendars.
Date: April 20, 2023
Creator: Rozzi, Ricardo, 1960-; Ɓlvarez, Ricardo; Castro, Victoria; NĆŗƱez, David; Ojeda, Jaime & Tauro, Alejandra
Object Type: Article
System: The UNT Digital Library
Analysis of the potential behavioral impact of methanol when used as a solvent: Dataset from zebrafish (Danio rerio) behavioral research (open access)

Analysis of the potential behavioral impact of methanol when used as a solvent: Dataset from zebrafish (Danio rerio) behavioral research

This article is a dataset that describes behavioral results in zebrafish (Danio rerio) individually exposed to methanol, a solvent which is capable of altering physiology and behavior high concentrations.
Date: April 1, 2021
Creator: Hamilton, Trevor J.; Szaszkiewicz, Joshua; Krook, Jeffrey & Burggren, Warren W.
Object Type: Article
System: The UNT Digital Library
Childhood Asthma and Smoking: Moderating Effect of Preterm Status and Birth Weight (open access)

Childhood Asthma and Smoking: Moderating Effect of Preterm Status and Birth Weight

Article exploring the association between second-hand smoke exposure, asthma, and asthma severity in children ages 6-17 as well as the effect of birth weight and prematurity (BWP) on parental smoking and asthma. Results indicate that focused asthma interventions in children should inquire about BWP status as well as parental smoking and household smoke exposure to reduce asthma morbidity and mortality.
Date: April 17, 2021
Creator: Ogbu, Chukwuemeka E.; Ogbu, Stella C.; Khadka, Dibya & Kirby, Russell S.
Object Type: Article
System: The UNT Digital Library
Data on whole length myosin binding protein C stabilizes myosin S2 as measured by gravitational force spectroscopy (open access)

Data on whole length myosin binding protein C stabilizes myosin S2 as measured by gravitational force spectroscopy

This article relates to the research article entitled "Whole length myosin binding protein C stabilized myosin subfragment-2 (s2) flexibility as measured by gravitational force spectroscopy" (Singh et al., 2018) [1]. The data exhibited the purified skeletal myosin binding protein (MyBPC) from rabbit back muscle was of slow skeletal type confirmed by chromatography and in unphosphorylated state based on its isoelectric point (pI) by chromatofocussing.
Date: December 4, 2017
Creator: Singh, Rohit R.; Dunn, James W.; Qadan, Motamed M.; Hall, Nakiuda; Wang, Kathy K. & Root, Douglas D.
Object Type: Article
System: The UNT Digital Library
Natural variation and improved genome annotation of the emerging biofuel crop field pennycress (open access)

Natural variation and improved genome annotation of the emerging biofuel crop field pennycress

Article describing pennycress genome annotation improvements using a combination of long- and short-read transcriptome data obtained from RNA derived from embryos of 22 accessions, in addition to public genome and gene expression information.
Date: April 13, 2022
Creator: GarcĆ­a Navarrete, Tatiana; Arias, Cintia LucĆ­a; Mukundi, Eric; Alonso, Ana Paula & Grotewold, Erich
Object Type: Article
System: The UNT Digital Library
Current Models for Transcriptional Regulation of Secondary Cell Wall Biosynthesis in Grasses (open access)

Current Models for Transcriptional Regulation of Secondary Cell Wall Biosynthesis in Grasses

This article reviews current advances in secondary cell wall regulation in grasses, and discusses the commonalities and the differences between grasses and dicots.
Date: April 4, 2018
Creator: Rao, Xiaolan & Dixon, R. A.
Object Type: Article
System: The UNT Digital Library
Arabidopsis thaliana EARLY RESPONSIVE TO DEHYDRATION 7 Localizes to Lipid Droplets via Its Senescence Domain (open access)

Arabidopsis thaliana EARLY RESPONSIVE TO DEHYDRATION 7 Localizes to Lipid Droplets via Its Senescence Domain

This article includes a proteomics analysis of Lipid Droplets (LDs) isolated from drought-stressed Arabidopsis leaves and identifying EARLY RESPONSIVE TO DEHYDRATION 7 (ERD7) as a putative LD protein. Observations provide new insight to ERD7 and the SD-containing family of proteins in plants and suggest that ERD7 may be involved in functional aspects of plant stress response that also include localization to the LD surface.
Date: April 14, 2021
Creator: Doner, Nathan M.; Seay, Damien C.; Mehling, Marina; Sun, Siqi; Gidda, Satinder K.; Schmitt, Kerstin et al.
Object Type: Article
System: The UNT Digital Library
CRISPR/Cas9-Induced fad2 and rod1 Mutations Stacked With fae1 Confer High Oleic Acid Seed Oil in Pennycress (Thlaspi arvense L.) (open access)

CRISPR/Cas9-Induced fad2 and rod1 Mutations Stacked With fae1 Confer High Oleic Acid Seed Oil in Pennycress (Thlaspi arvense L.)

Article utilizing Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)/Cas9 technology to produce knockout mutations in the FATTY ACID DESATURASE2 (FAD2) and REDUCED OLEATE DESATURATION1 (ROD1) genes to increase oleic acid content in Pennycress (Thlaspi arvense L.). Results suggest that combinatorial knockout of ROD1 and FAE1 may be a viable route to commercially increase oleic acid content in pennycress seed oil whereas mutations in FAD2 will likely require at least partial function to avoid fitness trade-offs.
Date: April 22, 2021
Creator: Jarvis, Brice A.; Romsdahl, Trevor B.; McGinn, Michaela G.; Nazarenus, Tara J.; Cahoon, Edgar B.; Chapman, Kent Dean et al.
Object Type: Article
System: The UNT Digital Library
Editorial: Regulation of and by the Plant Cell Wall (open access)

Editorial: Regulation of and by the Plant Cell Wall

Editorial on the research topic Regulation of and by the Plant Cell Wall.
Date: April 29, 2020
Creator: Rao, Xiaolan; Bartley, Laura E.; Drakakaki, Georgia & Anderson, Charles T.
Object Type: Article
System: The UNT Digital Library
Development of micro-electrode array based tests for neurotoxicity: assessment of interlaboratory reproducibility with neuroactive chemicals (open access)

Development of micro-electrode array based tests for neurotoxicity: assessment of interlaboratory reproducibility with neuroactive chemicals

Article evaluating the response to the pharmacological compounds Fluoxetine, Muscimol, and Verapamil in primary neuronal cultures. Final conclusions are drawn that MEA technology has a potential for standard in vitro neurotoxicity/neuropharmacology evaluation.
Date: April 27, 2011
Creator: Novellino, A.; Scelfo, Bibiana; Palosaari, T.; Price, A.; Sobanski, Tomasz; Shafer, T.J. et al.
Object Type: Article
System: The UNT Digital Library
Dietary Exposure to Low Levels of Crude Oil Affects Physiological and Morphological Phenotype in Adults and Their Eggs and Hatchlings of the King Quail (Coturnix chinensis) (open access)

Dietary Exposure to Low Levels of Crude Oil Affects Physiological and Morphological Phenotype in Adults and Their Eggs and Hatchlings of the King Quail (Coturnix chinensis)

Article studying the king quail as an animal model to determine if chronic dietary exposure to crude oil in a parental population affects morpho-physiological phenotypic variables in their immediate offspring generation.
Date: April 9, 2021
Creator: Bautista, Naim M.; Do Amaral-Silva, Lara; Dzialowski, Edward M. (Edward Michael) & Burggren, Warren W.
Object Type: Article
System: The UNT Digital Library
Vehicle emissions-exposure alters expression of systemic and tissue-specific components of the renin-angiotensin system and promotes outcomes associated with cardiovascular disease and obesity in wild-type C57BL/6 male mice (open access)

Vehicle emissions-exposure alters expression of systemic and tissue-specific components of the renin-angiotensin system and promotes outcomes associated with cardiovascular disease and obesity in wild-type C57BL/6 male mice

This article investigates the hypothesis that exposure to engine emissions increases systemic and local adipocyte RAS signaling, promoting the expression of factors involved in cardiovascular disease and obesity.
Date: April 15, 2021
Creator: Phipps, Benjamin L.; Suwannasual, Usa; Lucero, JoAnn; Mitchell, Nicholas A. & Lund, Amie K.
Object Type: Article
System: The UNT Digital Library
The Arabidopsis gene co-expression network (open access)

The Arabidopsis gene co-expression network

Article presents an Arabidopsis gene co-expression network constructed using RNA-Seq datasets, which will serve as a useful resource for the Arabidopsis research community to gain insights into Arabidopsis gene interactions and functions.
Date: April 26, 2022
Creator: Burks, David J.; Sengupta, Soham; De, Ronika; Mittler, Ron & Azad, Rajeev K.
Object Type: Article
System: The UNT Digital Library
4-Coumarate 3-hydroxylase in the lignin biosynthesis pathway is a cytosolic ascorbate peroxidase (open access)

4-Coumarate 3-hydroxylase in the lignin biosynthesis pathway is a cytosolic ascorbate peroxidase

Article describes an enzyme catalyzing the direct 3-hydroxylation of 4-coumarate to caffeate in lignin biosynthesis as a bifunctional peroxidase that oxidizes both ascorbate and 4-coumarate at comparable rates.
Date: April 30, 2019
Creator: Barros, Jaime; Escamilla-TreviƱo, Luis; Song, Luhua; Rao, Xiaolan; Serrani-Yarce, Juan Carlos; Docampo-Palacios, Maite et al.
Object Type: Article
System: The UNT Digital Library