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PMFF: Development of a Physics-Based Molecular Force Field for Protein Simulation and Ligand Docking
Article describes the development of a physics-based molecular force field (PMFF) by integrating a set of potential energy functions in which each term in an intermolecular potential energy function is derived based on experimental values, such as the dipole moments, lattice energy, proton transfer energy, and X-ray crystal structures.
Date:
January 15, 2020
Creator:
Hwang, Sung Bo; Lee, Chang Joon; Lee, Sehan; Ma, Songling; Kang, Young-Mook; Cho, Kwang-Hwi et al.
System:
The UNT Digital Library
A resonant single frequency molecular detector with high sensitivity and selectivity for gas mixtures
Article theoretically demonstrates a single low frequency gas detector that can be used for sensing of gas mixtures with high selectivity, accuracy, and sensitivity.
Date:
January 30, 2020
Creator:
Branković, Zorica & Rostovtsev, Yuri V.
System:
The UNT Digital Library
Accuracy of long-term volunteer water monitoring data: A multiscale analysis from a statewide citizen science program
Article describes study which assesses the relative accuracy of volunteer water quality data collected by the Texas Stream Team (TST) citizen science program from 1992–2016 across the State of Texas by comparing it to professional data from corresponding stations during the same time period.
Date:
January 29, 2020
Creator:
Albus, Kelly Hibbeler; Thompson, Rudi; Mitchell, Forrest; Kennedy, James H. & Ponette-González, Alexandra G.
System:
The UNT Digital Library
ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 1 (ADPG1) releases latent defense signals in stems with reduced lignin content
Article highlights the importance of pectin in cell wall integrity and the value of lignin modification as a tool to interrogate the informational content of plant cell walls.
Date:
January 23, 2020
Creator:
Gallego-Giraldo, Lina; Liu, Chang; Pose-Albacete, Sara; Pattathil, Sivakumar; Peralta, Angelo Gabriel; Young, Jenna et al.
System:
The UNT Digital Library
Testing gene-environment interactions for rare and/or common variants in sequencing association studies
Article describes study in which novel approaches to test the effects of gene-environment (GE) interactions of rare and/or common risk, and/or protective variants in sequencing association studies were developed.
Date:
March 10, 2020
Creator:
Zhao, Zihan; Zhang, Jianjun; Sha, Qiuying & Hao, Han
System:
The UNT Digital Library
Nanomolecular singlet oxygen photosensitizers based on hemiquinonoid-resorcinarenes, the fuchsonarenes
Article reports on singlet oxygen sensitization involving a class of hemiquinonoid-substituted resorcinarenes prepared from the corresponding 3,5-di-t-butyl-4-hydroxyphenyl-substituted resorcinarenes.
Date:
February 18, 2020
Creator:
Payne, Daniel T.; Webre, W. A.; Gobeze, Habtom B.; Seetharaman, Sairaman; Matsushita, Yoshitaka; Karr, Paul A. et al.
System:
The UNT Digital Library
A Small Compound Targeting Prohibitin with Potential Interest for Cognitive Deficit Rescue in Aging mice and Tau Pathology Treatment
Article describes study analyzing the effects of a new purine derivative drug, PDD005, in attenuating mechanisms involved in the pathogenesis of neurodegenerative diseases, using both in vivo and in vitro models.
Date:
January 24, 2020
Creator:
Guyot, Anne-Cécile; Leuxe, Charlotte; Disdier, Clémence; Oumata, Nassima; Costa, Narciso; Le Roux, Gwenaëlle et al.
System:
The UNT Digital Library
Spin Hall effect in prototype Rashba ferroelectrics GeTe and SnTe
Article describes study investigating spin Hall effect (SHE) in two prototypical Ferroelectric Rashba semiconductors (FERSCs), GeTe and SnTe, and show that it can be large either in ferroelectric or paraelectric structure.
Date:
January 24, 2020
Creator:
Wang, Haihang; Gopal, Priya; Picozzi, Silvia; Curtarolo, Stefano; Buongiorno Nardelli, Marco & Sławińska, Jagoda
System:
The UNT Digital Library
Limiting Diffusion Coefficients for Ions and Nonelectrolytes in Solvents Water, Methanol, Ethanol, Propan-1-ol, Butan-1-ol, Octan-1-ol, Propanone and Acetonitrile at 298 K, Analyzed Using Abraham Descriptors
Article describes study demonstrating that solute hydrogen bond acidity, solute hydrogen bond basicity and solute volume all lower the diffusion constants of ions and nonelectrolytes in the various solvents studied.
Date:
May 21, 2019
Creator:
Abraham, M. H. (Michael H.) & Acree, William E. (William Eugene)
System:
The UNT Digital Library
Targeting the pattern-triggered immunity pathway to enhance resistance to Fusarium graminearum
Article describes study which shows that resistance against fusarium graminearum, the primary casual agent of fusarium head blight (FHB), can be enhanced by flg22, a bacterial microbe-associated molecular pattern (MAMP).
Date:
February 6, 2019
Creator:
Sarowar, Sujon; Alam, Syeda T.; Makandar, Ragiba; Lee, Hyeonju; Trick, Harold N.; Dong, Yanhong et al.
System:
The UNT Digital Library
Beyond the wall: High-throughput quantification of plant soluble and cell-wall bound phenolics by liquid chromatography tandem mass spectrometry
Article describes a study in which a novel high-throughput ultra-high performance liquid chromatography tandem mass spectrometry (UHPLC–MS/MS) method was established to quantify the levels of 19 flavonoids and 15 other phenolic compounds, including acids, aldehydes, and alcohols.
Date:
December 26, 2018
Creator:
Cocuron, Jean-Christophe; Casas, Maria Isabel; Yang, Fan & Grotewold, Erich
System:
The UNT Digital Library
Surface Activation and Pretreatments for Biocompatible Metals and Alloys Used in Biomedical Applications
Article describes the main surface activation and pretreatment techniques for substrates such as titanium and its alloys, stainless steel, magnesium alloys, and CoCrMo alloys.
Date:
June 2, 2019
Creator:
Huynh, Vivian; Ngo, Ngan K. & Golden, Teresa Diane, 1963-
System:
The UNT Digital Library
All-acoustic signal modulation and logic operation via defect induced cavity effects in phononic crystal coupled-resonator acoustic waveguides
Article describes experiment where a coupled resonant acoustic waveguide (CRAW) in a phononic crystal (PnC) was engineered to manipulate the propagation of ultrasonic waves within a conventional phononic bandgap for wavelength division multiplexing.
Date:
November 6, 2019
Creator:
Reyes, Delfino; Walker, Ezekiel; Zubov, Yurii; Heo, Hyeonu; Krokhin, Arkadii A. & Neogi, Arup
System:
The UNT Digital Library
One thousand plant transcriptomes and the phylogenomics of green plants
Article describes the results of the One Thousand Plant Transcriptomes Initiative's efforts to sequence the vegetative transcriptomes of 1,124 species that span the diversity of plants in a broad sense (Archaeplastida), including green plants (Viridiplantae), glaucophytes (Glaucophyta) and red algae (Rhodophyta).
Date:
October 23, 2019
Creator:
One Thousand Plant Transcriptomes Initiative
System:
The UNT Digital Library
Plasmonically-powered hot carrier induced modulation of light emission in a two-dimensional GaAs semiconductor quantum well
Article describes an experiment in which a hot-electron-enabled route to controlling light with dissipative loss compensation in semiconductor quantum light emitters has been realized for tunable quantum optoelectronic devices via a two-species plasmon system.
Date:
December 10, 2018
Creator:
Ashalley, Eric; Gryczynski, Karol; Wang, Zhiming; Salamo, Gregory & Neogi, Arup
System:
The UNT Digital Library
Lignin biosynthesis: old roads revisited and new roads explored
Article presents several hypothetical models to illustrate information about lignin and the lignification process in plants.
Date:
December 4, 2019
Creator:
Dixon, R. A. & Barros, Jaime
System:
The UNT Digital Library
Retinal oxygen supply shaped the functional evolution of the vertebrate eye
Article explores the hypothesis that oxygen diffusion limited the evolution of retinal morphology by reconstructing the evolution of retinal thickness and the various mechanisms for retinal oxygen supply, including capillarization and acid-induced haemoglobin oxygen unloading.
Date:
December 10, 2019
Creator:
Damsgaard, Christian; Lauridsen, Henrik; Funder, Anette MD; Thomsen, Jesper S.; Desvignes, Thomas; Crossley, Dane A., II et al.
System:
The UNT Digital Library
Identification and characterization of a core set of ROS wave‐associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light
Article reveal that the systemic transcriptomic response of plants to excess light stress is extensive in the context of systemic acquired acclimation and involves an early (2 min) and transient stage of transcript expression that includes thousands of genes.
Date:
December 6, 2018
Creator:
Zandalinas, Sara I.; Sengupta, Soham; Burks, David; Azad, Rajeev K. & Mittler, Ron
System:
The UNT Digital Library
Nanoextraction Coupled to Liquid Chromatography Mass Spectrometry Delivers Improved Spatially Resolved Analysis
Article describes a study which demonstrates that it is possible to significantly improve the repeatability of the direct analyte-probed nanoextraction (DAPNe) technique by incorporating a liquid chromatography separation step.
Date:
November 20, 2019
Creator:
Lewis, Holly-May; Webb, Roger P.; Verbeck, Guido F.; Bunch, Josephine; de Jesus, Janella; Costa, Catia et al.
System:
The UNT Digital Library
Mahi‐mahi (Coryphaena hippurus ) life development: morphological, physiological, behavioral and molecular phenotypes
Article relates a study describing the development of cultured mahi‐mahi from the zygote stage to adult.
Date:
March 18, 2019
Creator:
Perrichon, Prescilla; Stieglitz, John D.; Xu, Elvis Genbo; Magnuson, Jason T.; Pasparakis, Christina; Mager, Edward M. et al.
System:
The UNT Digital Library
Computational Study of 3d Metals and Their Influence on the Acidity of Methane C–H Bonds
Article describes experiment where CCSD(T) methods in conjunction with correlation consistent basis sets were used to predict the pKa for the deprotonation of methane in a 3d metal ion adduct, [M···CH4]+ (M = Sc–Cu), in dimethyl sulfoxide solvent, which is modeled by the SMD continuum solvent model.
Date:
November 19, 2019
Creator:
Zhou, Christopher X. & Cundari, Thomas R., 1964-
System:
The UNT Digital Library
An Efficient Synthesis of Deoxyrhapontigenin-3-O-β-d-glucuronide, a Brain-Targeted Derivative of Dietary Resveratrol, and Its Precursor 4′-O-Me-Resveratrol
Article discusses the identification of the brain-available phenol glucuronide metabolite deoxyrhapontigenin-3-O-β-d-glucuronide (5) in perfused rat brains following subacute treatment with the stilbene resveratrol.
Date:
May 7, 2019
Creator:
de Fátima, Ângelo; Docampo-Palacios, Maite; Alvarez-Hernandez, Anislay; Pasinetti, Giulio M. & Dixon, R. A.
System:
The UNT Digital Library
Classical trajectory Monte Carlo simulation of plasma fueling using magnetic plasma expulsion
Article describes a study exploring the possibility of fueling a magnetically confined plasma using particle sources located inside of the plasma.
Date:
July 11, 2019
Creator:
Martinez, Armando & Ordonez, Carlos A.
System:
The UNT Digital Library
Magnesium Regulates Endothelial Barrier Functions through TRPM7, MagT1, and S1P1
Article discusses the role of Mg2+ in regulating vascular functions.
Date:
July 30, 2019
Creator:
Zhu, Donghui; You, Jing; Zhao, Nan & Xu, Huaxi
System:
The UNT Digital Library