Plasma modification of vanadium oxynitride surfaces: Characterization by in situ XPS experiments and DFT calculations (open access)

Plasma modification of vanadium oxynitride surfaces: Characterization by in situ XPS experiments and DFT calculations

Article reports XPS and DFT findings regarding the O₂ plasma, NH₃ plasma, and NH₃+O₂ plasma treatment of sputter deposited vanadium oxynitride films.
Date: October 13, 2020
Creator: Osonkie, A.; Lee, V.; Chukwunenye, P.; Cundari, Thomas R., 1964- & Kelber, Jeffry A.
System: The UNT Digital Library
Recurrent urinary tract infection and estrogen shape the taxonomic ecology and function of the postmenopausal urogenital microbiome (open access)

Recurrent urinary tract infection and estrogen shape the taxonomic ecology and function of the postmenopausal urogenital microbiome

Article describes how postmenopausal women are severely affected by recurrent urinary tract infection (rUTI). The authors perform shotgun metagenomics and advanced culture on urine from a controlled cohort of postmenopausal women to identify urogenital microbiome compositional and function changes linked to rUTI susceptibility.
Date: October 18, 2022
Creator: Neugent, Michael D.; Kumar, Ashwani; Hulyalkar, Neha V.; Lutz, Kevin C.; Nguyen, Vivian H.; Fuentes, Jorge L. et al.
System: The UNT Digital Library
Optical in-situ measurements and modeling of post-flame sulfation of NaOH(g) and NaCl(g) (open access)

Optical in-situ measurements and modeling of post-flame sulfation of NaOH(g) and NaCl(g)

Article describes post-flame sulfation of gaseous sodium hydroxide (NaOH) and sodium chloride (NaCl) was investigated with optical in situ measurements at 850 to 1475°C. The combined experimental data, chemical equilibrium calculations and kinetic modeling of the present study support that sulfation of alkali species can occur in the gas phase through homogeneous reactions.
Date: October 13, 2022
Creator: Schmid, Daniel; Weng, Wubin; Li, Shen; Karlström, Oskar; Hupa, Mikko; Li, Zhongshan et al.
System: The UNT Digital Library
Sustainable nutrition: a spatially explicit modeling approach for urban land use planning (open access)

Sustainable nutrition: a spatially explicit modeling approach for urban land use planning

Article describes how rapid urbanization has influenced the transformation of local and global food systems, altering the availability, access to, and distribution of healthy food. Micronutrient deficiency and hunger have been exacerbated worldwide. The author's research proposes a simulation strategy to evaluate the impact of agricultural land use and crop choices on nutritional production in rapidly growing urban areas.
Date: October 14, 2022
Creator: Torres, Angélica Torres; Tiwari, Chetan & Atkinson, Samuel F.
System: The UNT Digital Library
A covalently linked nickel(II) porphyrin–ruthenium(II) tris(bipyridyl) dyad for efficient photocatalytic water oxidation (open access)

A covalently linked nickel(II) porphyrin–ruthenium(II) tris(bipyridyl) dyad for efficient photocatalytic water oxidation

Article describes how photocatalytic water splitting into H2 and O2 has attracted significant scientific interest for solar energy conversion applications during the last two decades. Authors of the article further elaborate that One of the half-reactions of this process, water oxidation, is known to be the key step in natural and artificial photosynthesis to convert and store solar energy.
Date: October 5, 2022
Creator: Nikoloudakis, Emmanouil; Alsaleh, Ajyal Z.; Charalambidis, Georgios; Coutsolelos, Athanassios G. & D'Souza, Francis
System: The UNT Digital Library
Corrosion Inhibition Effect of Pyridine-2-Thiol for Brass in An Acidic Environment (open access)

Corrosion Inhibition Effect of Pyridine-2-Thiol for Brass in An Acidic Environment

Article states that the inhibitive performance of pyridine-2-thiol added to a corrosive solution was investigated for brass using potentiodynamic polarization, electrochemical impedance spectroscopy, and X-ray photoelectron spectroscopy. Scanning electron microscopy showed defect free and less scale formation for the inhibited surface but the bare brass surface had larger amounts of scale formation. X-ray photoelectron spectroscopy and UV-vis spectroscopy was used to investigate surface chemical composition and inhibitor structural changes over time.
Date: October 3, 2022
Creator: Karunarathne, Darshan Jayasinghe; Aminifazl, Alireza; Abel, Tori E.; Quepons, Karen L. & Golden, Teresa Diane, 1963-
System: The UNT Digital Library
Beyond the Chicken: Alternative Avian Models for Developmental Physiological Research (open access)

Beyond the Chicken: Alternative Avian Models for Developmental Physiological Research

This article is a review examining the characteristics that make an animal model attractive for developmental research and explores opportunities presented by the embryo to adult continuum of alternative bird models including quail, ratites, songbirds, birds of prey, and corvids.
Date: October 21, 2021
Creator: Flores-Santin, Josele & Burggren, Warren W.
System: The UNT Digital Library
Aggregation-induced phosphorescence sensitization in two heptanuclear and decanuclear gold–silver sandwich clusters (open access)

Aggregation-induced phosphorescence sensitization in two heptanuclear and decanuclear gold–silver sandwich clusters

This article obtains two few-atom heterometallic gold–silver hepta-/decanuclear clusters, denoted Au₆Ag and Au₉Ag, and determines their structures by X-ray diffraction and mass spectrometry.
Date: October 30, 2020
Creator: Lu, Zhou; Yang, Yu-Jie; Ni, Wen-Xiu; Li, Mian; Zhao, Yifang; Huang, Yong-Liang et al.
System: The UNT Digital Library
Cysne et al. Reply (open access)

Cysne et al. Reply

This article is a response to a comment on the authors' original article "Disentangling Orbital and Valley Hall Effects in Bilayers of Transition Metal Dichalcogenides." The authors' response concludes that they do not believe the main points of the original Letter are affected by the Comment.
Date: October 1, 2021
Creator: Cysne, Tarik P.; Costa, Marcio; Canonico, Luis M.; Buongiorno Nardelli, Marco; Muniz, R. B. & Rappoport, Tatiana G.
System: The UNT Digital Library
Crowdsourcing biocuration: the Community Assessment of Community 1 Annotation with Ontologies (CACAO) (open access)

Crowdsourcing biocuration: the Community Assessment of Community 1 Annotation with Ontologies (CACAO)

Article describing an approach to expand biocuration through crowdsourcing with undergraduates in the community-oriented wiki framework for GO annotation called the Gene Ontology Normal Usage Tracking System (GONUTS). This multiplies the number of high-quality annotations in international databases, enriches the coverage of the literature on normal gene function, and pushes the field in new directions.
Date: October 28, 2021
Creator: Ramsey, Jolene; McIntosh, Brenley; Renfro, Daniel; Aleksander, Susan A.; LaBonte, Sandra; Ross, Curtis et al.
System: The UNT Digital Library
Sub-Diffraction-Limit Imaging System with two Interfacing Hyperbolic Metamaterials (open access)

Sub-Diffraction-Limit Imaging System with two Interfacing Hyperbolic Metamaterials

Article demonstrating that a system of two interfacing hyperbolic metamaterials may be used for direct subwavelength imaging in the visible range.
Date: October 27, 2021
Creator: Bronnikov, Kirill; Arriaga, J.; Krokhin, Arkadii A. & Drachev, Vladimir P.
System: The UNT Digital Library
Trypsin induces an aversive response in zebrafish by PAR2 activation in keratinocytes (open access)

Trypsin induces an aversive response in zebrafish by PAR2 activation in keratinocytes

Article using zebrafish as a model and identifies that trypsin induces an aversive response in zebrafish larvae and adult zebrafish. Results show that the trypsin activates PAR2 on keratinocytes signaling the brain, and this pathway of trypsin-induced escape response will provide a unique communication mechanism in zebrafish.
Date: October 8, 2021
Creator: Alsrhani, Abdullah; Raman, Revathi & Jagadeeswaran, Pudur
System: The UNT Digital Library
Revision and Extension of a Generally Applicable Group-Additivity Method for the Calculation of the Standard Heat of Combustion and Formation of Organic Molecules (open access)

Revision and Extension of a Generally Applicable Group-Additivity Method for the Calculation of the Standard Heat of Combustion and Formation of Organic Molecules

Article presenting the calculation of the heats of combustion ΔH°c and formation ΔH°f of organic molecules at standard conditions using a commonly applicable computer algorithm based on the group-additivity method. This work is a continuation and extension of an earlier publication.
Date: October 10, 2021
Creator: Naef, Rudolf & Acree, William E. (William Eugene)
System: The UNT Digital Library
Substrate Specificity of LACCASE8 Facilitates Polymerization of Caffeyl Alcohol for C-Lignin Biosynthesis in the Seed Coat of Cleome hassleriana (open access)

Substrate Specificity of LACCASE8 Facilitates Polymerization of Caffeyl Alcohol for C-Lignin Biosynthesis in the Seed Coat of Cleome hassleriana

This article finds that the transcript profile of the laccase gene ChLAC8 parallels the accumulation of C-lignin during seed coat development. Recombinant ChLAC8 oxidizes caffeyl and sinapyl alcohols, generating their corresponding dimers or trimers in vitro, but cannot oxidize coniferyl alcohol. The authors propose a basis for this substrate preference based on molecular modeling/docking experiments. Suppression of ChLAC8 expression led to significantly reduced C-lignin content in the seed coats of transgenic Cleome plants. Feeding of 13C-caffeyl alcohol to the Arabidopsis (Arabidopsis thaliana) caffeic acid o-methyltransferase mutant resulted in no incorporation of 13C into C-lignin, but expressing ChLAC8 in this genetic background led to appearance of C-lignin with >40% label incorporation. These results indicate that ChLAC8 is required for C-lignin polymerization and determines lignin composition when caffeyl alcohol is available.
Date: October 9, 2020
Creator: Wang, Xin; Zhuo, Chunliu; Xiao, Xirong; Wang, Xiaoqiang; Docampo-Palacios, Maite; Chen, Fang et al.
System: The UNT Digital Library
Efficient separation of xylene isomers by a guest-responsive metal–organic framework with rotational anionic sites (open access)

Efficient separation of xylene isomers by a guest-responsive metal–organic framework with rotational anionic sites

Article demonstrating the adaptively molecular discrimination of xylene isomers by employing a NbOF52−-pillared metal–organic framework (NbOFFIVE-bpy-Ni, also referred to as ZU-61) with rotational anionic sites.
Date: October 28, 2020
Creator: Cui, Xili; Niu, Zheng; Shan, Chuan; Yang, Lifeng; Hu, Jianbo; Wang, Qingju et al.
System: The UNT Digital Library
Unusual Mathematical Approaches Untangle Nervous Dynamics (open access)

Unusual Mathematical Approaches Untangle Nervous Dynamics

Article reports that the massive amount of available neurodata suggests the existence of a mathematical backbone underlying neuronal oscillatory activities. The authors assert that the Monge’s theorem might contribute to our visual ability of depth perception and the brain connectome can be tackled in terms of tunnelling nanotubes.
Date: October 14, 2022
Creator: Tozzi, Arturo & Mariniello, Lucio
System: The UNT Digital Library
Tuning the decay of sound in a viscous metamaterial (open access)

Tuning the decay of sound in a viscous metamaterial

Authors of the article use analytical results for viscous dissipation in phononic crystals to calculate the decay coefficient of a sound wave propagating at low frequencies through a two-dimensional phononic crystal with a viscous fluid background. They claim that the decay coefficient exhibits dependence on the direction of propagation; that is, a homogenized phononic crystal behaves like an anisotropic viscous fluid.
Date: October 10, 2022
Creator: Ibarias, M.; Doporto, J.; Krokhin, Arkadii A. & Arriaga, J.
System: The UNT Digital Library
MetaLP: An integrative linear programming method for protein inference in metaproteomics (open access)

MetaLP: An integrative linear programming method for protein inference in metaproteomics

Authors of the article discuss how MetaLP was developed here for protein inference in metaproteomics using an integrative linear programming method. Authors claim that MetaLP could substantially improve protein inference for complex metaproteomes by incorporating taxonomic abundance information in a linear programming model.
Date: October 21, 2022
Creator: Feng, Shichao; Ji, Hong-Long; Wang, Huan; Zhang, Bailu; Sterzenbach, Ryan; Pan, Chongle et al.
System: The UNT Digital Library
Identification of Novel Antimicrobial Resistance Genes Using Machine Learning, Homology Modeling, and Molecular Docking (open access)

Identification of Novel Antimicrobial Resistance Genes Using Machine Learning, Homology Modeling, and Molecular Docking

Article claims antimicrobial resistance (AMR) threatens the healthcare system worldwide with the rise of emerging drug resistant infectious agents. To infer novel resistance genes, we used complete gene sets of several bacterial strains known to be susceptible or resistant to specific drugs and associated phenotypic information within a machine learning framework that enabled prioritizing genes potentially involved in resistance.
Date: October 23, 2022
Creator: Sunuwar, Janak & Azad, Rajeev K.
System: The UNT Digital Library
ARKENSTONE – I. A novel method for robustly capturing high specific energy outflows in cosmological simulations (open access)

ARKENSTONE – I. A novel method for robustly capturing high specific energy outflows in cosmological simulations

Article describes how ARKENSTONE is a new model for multiphase, stellar feedback-driven galactic winds designed for inclusion in coarse resolution cosmological simulations. In this first paper of a series, the authors describe the features that allow ARKENSTONE to properly treat high specific energy wind components and demonstrate them using idealized non-cosmological simulations of a galaxy with a realistic circumgalactic medium (CGM) using the AREPO code.
Date: October 17, 2023
Creator: Smith, Matthew C.; Fielding, Drummond B.; Bryan, Greg L.; Kim, Chang-Goo; Ostriker, Eve C.; Somerville, Rachel S. et al.
System: The UNT Digital Library
The formation channels of multiphase gas in nearby early-type galaxies (open access)

The formation channels of multiphase gas in nearby early-type galaxies

Article describes how the processes responsible for the assembly of cold and warm gas in early-type galaxies (ETGs) are not well understood. The authors report on the multiwavelength properties of 15 non-central, nearby ETGs primary through Multi-Unit Spectroscopic Explorer (MUSE) and Chandra X-ray observations, to address the origin of their multiphase gas.
Date: October 21, 2023
Creator: Eskenasy, Ryan; Olivares, Valeria; Su, Yuanyuan & Li, Yuan
System: The UNT Digital Library
Differential effects of soil conservation practices on arthropods and crop yields (open access)

Differential effects of soil conservation practices on arthropods and crop yields

Article describes how many agricultural management tactics, such as reduced tillage, aim to promote biodiversity and ecosystem services. Authors assessed how soil tillage and landscape context affected arthropod biodiversity and crop yield in canola crop fields.
Date: October 31, 2023
Creator: Lichtenberg, Elinor M.; Milosavljević, Ivan; Campbell, Alistair J. & Crowder, David W.
System: The UNT Digital Library
Neuron Navigator 1 (Nav1) regulates the response to cocaine in mice (open access)

Neuron Navigator 1 (Nav1) regulates the response to cocaine in mice

Article describes how genetic variation accounts for much of the risk for developing a substance use disorder, but the underlying genetic factors and their genetic effector mechanisms are mostly unknown. To test their genetic hypothesis, the authors generated and characterized Nav1 knockout mice.
Date: October 18, 2023
Creator: Bagley, Jared R.; Tan, Yalun; Zhu, Wan; Cheng, Zhuanfen; Takeda, Saori; Fang, Zhouqing et al.
System: The UNT Digital Library
The refractive index of a single atom experienced by a single photon (open access)

The refractive index of a single atom experienced by a single photon

Article describes how the refractive index of a system is often viewed as the collective response of a medium to an electromagnetic field. By studying the propagation of a single photon interacting with a two-level atom, the authors examine the dispersion behavior, calculate the phase and group velocity of the photon wave packet, and further analyze the dispersion experienced by the photon.
Date: October 25, 2023
Creator: Rostovtsev, Yuri V.; Emerick, Jacob & Patnaik, Anil K.
System: The UNT Digital Library