Reduced structural flexibility for an exonuclease deficient DNA polymerase III mutant (open access)

Reduced structural flexibility for an exonuclease deficient DNA polymerase III mutant

This article reports on the dynamics of E coli DNA polymerase III proofreading in the presence of its processivity factor, the β₂-sliding clamp, at varying base pair termini using single-molecule FRET.
Date: June 29, 2018
Creator: Gahlon, Hailey L.; Walker, Alice R.; Cisneros, Gerardo Andrés; Lamers, Meindert H. & Rueda, David S.
Object Type: Article
System: The UNT Digital Library
Parametric nondifferentiable multiobjective fractional programming under (b;Ψ; Φ; ρ)-univexity (open access)

Parametric nondifferentiable multiobjective fractional programming under (b;Ψ; Φ; ρ)-univexity

This article is concerned with optimality conditions and duality results for nondifferentiable multi-objective fractional programming problems.
Date: September 27, 2018
Creator: Antczak, Tadeusz & Verma, Ram U.
Object Type: Article
System: The UNT Digital Library
Computational design of environmental sensors for the potent opioid fentanyl (open access)

Computational design of environmental sensors for the potent opioid fentanyl

This article describes the computational design of proteins that bind the potent analgesic fentanyl.
Date: September 19, 2017
Creator: Bick, Matthew J.; Greisen, Per J.; Morey, Kevin J.; Antunes, Mauricio S.; La, David; Sankaran, Banumathi et al.
Object Type: Article
System: The UNT Digital Library
IRES Track II - Cape Horn ASIs: Climate change and disease ecology at the southern end of the Americas (open access)

IRES Track II - Cape Horn ASIs: Climate change and disease ecology at the southern end of the Americas

Data management plan for the grant "IRES Track II - Cape Horn ASIs: Climate change and disease ecology at the southern end of the Americas." Research giving students the opportunity to be trained in quantitative experimental design and work as part of a multinational research collaboration to study infectious disease emergence in one of the few remaining pristine places on Earth. The Cape Horn Biosphere Reserve (CHBR) off the southern tip of South America protects pristine ecosystem is perfect for this type of graduate student training. The CHBR is part of the sub-Antarctic Magellanic ecoregion, which is globally significant because it houses the worlds southernmost forest biome, contains numerous endemic species, is remote, and is relatively free of anthropogenic impacts. The research questions themselves will be flexible, but organized thematically. Specifically, this IRES Track-II will focus on the merging molecular genetic analysis using a mobile next generation sequencing lab with mist netting and arthropod trapping to investigate the impacts of wildlife disease on local biodiversity and community structure. Secondarily, eDNA and traditional wildlife disease monitoring approaches will be applied to understand the potential for zoonosis and understanding ecological factors that contribute to, or inhibit, zoonosis. Resultantly, participation in this program …
Date: 2021-09-01/2024-08-31
Creator: Gregory, Andrew; Kennedy, James H. & Rozzi, Ricardo, 1960-
Object Type: Text
System: The UNT Digital Library
Collaborative Research: PIC: Slow Wave Enhanced Electrooptically Tuned Michelson Interferometer Biosensor for On-Chip Polarization Interferometry (open access)

Collaborative Research: PIC: Slow Wave Enhanced Electrooptically Tuned Michelson Interferometer Biosensor for On-Chip Polarization Interferometry

Data management plan for the grant, "Collaborative Research: PIC: Slow Wave Enhanced Electrooptically Tuned Michelson Interferometer Biosensor for On-Chip Polarization Interferometry."
Date: 2022-09-01/2025-08-31
Creator: Rout, Bibhudutta
Object Type: Text
System: The UNT Digital Library
Low-Energy Atomic Processes Including Ones Involving a Positron (open access)

Low-Energy Atomic Processes Including Ones Involving a Positron

Data management plan for the grant, "Low-Energy Atomic Processes Including Ones Involving a Positron." The proposed research in theoretical atomic physics involves few-body systems of charged particles, especially ones that involve the antiparticle of the electron, which is a positron. One of these systems is the positronium negative ion, which is comprised of two electrons and a positron. The exotic positronium atom is similar to the conventional hydrogen atom, but the positive charge in the atom is a positron rather than a proton. The proposed studies of these few-body charged systems will support international collaborations with scientists in the UK and Japan.
Date: 2022-09-01/2025-08-31
Creator: Quintanilla, Sandra J.
Object Type: Text
System: The UNT Digital Library
High-redshift AGN in the Chandra Deep Fields: the obscured fraction and space density of the sub-L∗ population (open access)

High-redshift AGN in the Chandra Deep Fields: the obscured fraction and space density of the sub-L∗ population

This article investigates the population of high-redshift (3≤z<6) active galactic nuclei (AGN) selected in the two deepest X-ray surveys, the 7 Ms Chandra Deep Field-South and 2 Ms Chandra Deep Field-North.
Date: September 26, 2017
Creator: Vito, F.; Brandt, William Nielsen; Yang, G.; Gilli, Roberto; Luo, Bin; Vignali, Christian et al.
Object Type: Article
System: The UNT Digital Library
Identification of bottlenecks in the accumulation of cyclic fatty acids in camelina seed oil (open access)

Identification of bottlenecks in the accumulation of cyclic fatty acids in camelina seed oil

This article proposes a model for the accumulation of substantial levels of cyclopropane fatty acids (CPA) in camelina, and discusses the differences between CPA accumulation in camelina and Arabidopsis.
Date: July 10, 2017
Creator: Yu, Xiao-Hong; Cahoon, Rebecca E.; Horn, Patrick J.; Shi, Hai; Prakash, Richa R.; Cai, Yuanheng et al.
Object Type: Article
System: The UNT Digital Library
Deep Minima and Vortices for Positronium Formation in Low-Energy Positron-Hydrogen Collisions (open access)

Deep Minima and Vortices for Positronium Formation in Low-Energy Positron-Hydrogen Collisions

Article using the two-channel Kohn inverse and Kohn variational methods to investigate ground-state positronium (Ps) formation in positron-hydrogen collisions in the Ore gap. This is the Accepted Manuscript Version of the article.
Date: September 30, 2019
Creator: Alrowaily, Albandari W.; Quintanilla, Sandra J. & Van Reeth, P.
Object Type: Article
System: The UNT Digital Library
Plasmon coupled super- and sub- radiance from dye shells (open access)

Plasmon coupled super- and sub- radiance from dye shells

Article investigates cooperative spontaneous emission, theoretically and experimentally, for an ensemble of emitters coupled to a core-shell structure.
Date: September 2018
Creator: de Silva, Vashista C.; Moazzezi, Mojtaba; Rostovtsev, Yuri V. & Drachev, Vladimir P.
Object Type: Article
System: The UNT Digital Library
Anisotropic Optical Properties of 2D Silicon Telluride (open access)

Anisotropic Optical Properties of 2D Silicon Telluride

Article reports an ab initio computational study of the optical dielectric properties of Silicon telluride (Si2Te3) using the GW approximation and the Bethe-Salpeter equation (BSE).
Date: September 27, 2020
Creator: Cui, Jingbiao; Bhattarai, Romakanta; Chen, Jiyang; Hoang, Thang B. & Shen, Xiao
Object Type: Article
System: The UNT Digital Library
Convective oxygen transport during development in embryos of the snapping turtle Chelydra serpentina (open access)

Convective oxygen transport during development in embryos of the snapping turtle Chelydra serpentina

This article describes a study investigating the maturation of convective oxygen transport in embryos of the snapping turtle (Chelydra serpentina). Measurements included: mass, oxygen consumption, heart rate, blood oxygen content and affinity and blood flow distribution at 50%, 70% and 90% of the incubation period.
Date: September 24, 2018
Creator: Sartori, Marina R.; Kohl, Zachary F.; Taylor, Edwin W.; Abe, Augusto S. & Crossley, Dane A., II
Object Type: Article
System: The UNT Digital Library
Parental stressor exposure simultaneously conveys both adaptive and maladaptive larval phenotypes through epigenetic inheritance in the zebrafish (Danio rerio) (open access)

Parental stressor exposure simultaneously conveys both adaptive and maladaptive larval phenotypes through epigenetic inheritance in the zebrafish (Danio rerio)

This article is a study using crude oil as an example of an environmental stressor in adult zebrafish. The offspring obtained were then assessed for transgenerational epigenetic transfer of oil-induced phenotypes. The authors conclude that epigenetic transgenerational inheritance can lead to an immediate and simultaneous inheritance of both beneficial and maladaptive traits in a large proportion of the F1 larvae. The adaptive responses may help fish populations survive when facing transient environmental stressors.
Date: September 5, 2019
Creator: Bautista, Naim M. & Burggren, Warren W.
Object Type: Article
System: The UNT Digital Library
The osmorespiratory compromise in the euryhaline killifish: water regulation during hypoxia (open access)

The osmorespiratory compromise in the euryhaline killifish: water regulation during hypoxia

Article studying water regulation during hypoxia in euryhaline killifish.
Date: September 24, 2019
Creator: Mager, Edward M.; Wood, Chris M.; Ruhr, Ilan M.; Schauer, Kevin L.; Wang, Yadong; McDonald, M. Danielle et al.
Object Type: Article
System: The UNT Digital Library
Commentary on “Uncover the Effect of Solvent and Temperature on Solid-Liquid Equilibrium Behavior of L-Norvaline” (open access)

Commentary on “Uncover the Effect of Solvent and Temperature on Solid-Liquid Equilibrium Behavior of L-Norvaline”

This article provides a commentary on several sets of reported curve-fit parameters for the Modified Apelblat model that do not correctly back-calculate the observed solubility behavior of L-norvaline in the binary aqueous-alcohol solvent mixtures.
Date: September 18, 2017
Creator: Acree, William E. (William Eugene)
Object Type: Article
System: The UNT Digital Library
Atomic layer deposition of h-BN(0001) multilayers on Ni(111) and chemical vapor deposition of graphene on h-BN(0001)/Ni(111) (open access)

Atomic layer deposition of h-BN(0001) multilayers on Ni(111) and chemical vapor deposition of graphene on h-BN(0001)/Ni(111)

Article studying atomic layer deposition. In situ direct, epitaxial growth of multilayers of hexagonal boron nitride (h-BN) and graphene without physical transfer is of significant interest for the scalable production of graphene/h-BN heterostructures for device applications. Deposition on magnetic substrates is of particular interest for spin tunneling applications. X-ray photoelectron spectroscopy and low energy electron diffraction demonstrate epitaxial atomic-layer deposition (ALD) of multilayer h-BN(0001) on Ni(111) and subsequent deposition of azimuthally-aligned multilayer graphene on h-BN(0001)/Ni(111) by chemical vapor deposition. Boron nitride ALD was accomplished with alternating cycles of BCl₃/NH₃ at a 600 K substrate temperature, and subsequent annealing in ultrahigh vacuum. Subsequent deposition of graphene was achieved by chemical vapor deposition using ethylene (CH₂CH₂) at 1000 K.
Date: September 17, 2019
Creator: Kelber, Jeffry A.; Jones, Jessica; Pilli, Aparna; Lee, Veronica; Beatty, John; Beauclair, Brock et al.
Object Type: Article
System: The UNT Digital Library
Unraveling Δ1-Pyrroline-5-Carboxylate-Proline Cycle in Plants by Uncoupled Expression of Proline Oxidation Enzymes (open access)

Unraveling Δ1-Pyrroline-5-Carboxylate-Proline Cycle in Plants by Uncoupled Expression of Proline Oxidation Enzymes

Article showing that overexpression of MsProDH in tobacco and Arabidopsis or impairment of P5C oxidation in the Arabidopsis p5cdh mutant did not change the cellular Pro to P5C ratio under ambient and osmotic stress conditions, indicating that P5C excess was reduced to Pro in a mitochondrial-cytosolic cycle. Results show that normal oxidation of P5C to Glu by P5CDH is key to prevent P5C-Pro intensive cycling and avoid ROS production from electron run-off.
Date: September 25, 2009
Creator: Miller, Gad; Honig, Arik; Stein, Hanan; Suzuki, Nobuhiro; Mittler, Ron & Zilberstein, Aviah
Object Type: Article
System: The UNT Digital Library
Activation of an S6/H4 Kinase (PAK 65) from Human Placenta by Intramolecular and Intermolecular Autophosphorylation (open access)

Activation of an S6/H4 Kinase (PAK 65) from Human Placenta by Intramolecular and Intermolecular Autophosphorylation

Article proposing a model in which phosphorylation of sites 1 and 2 occurs sequentially. The model proposes that trypsin treatment of the inactive holoenzyme removes an inhibitory rac-binding domain which blocks MgATP access to the catalytic site. The pseudosubstrate domain at site 1 is autophosphorylated and subsequent bimolecular autophosphorylation at site 2 fully opens the catalytic site.
Date: September 8, 1995
Creator: Benner, Gretchen E.; Dennis, Patrick B. & Masaracchia, Ruthann A.
Object Type: Article
System: The UNT Digital Library
Activation of an S6 Kinase From Human Placenta by Autophosphorylation (open access)

Activation of an S6 Kinase From Human Placenta by Autophosphorylation

Article describing a novel S6 kinase isolated from human placenta which autoactivates through autophosphorylation in vitro. The data supports the hypothesis that this previously uncharacterized S6 kinase belongs to a unique family of protein kinases which utilize autophosphorylation as part of their in vivo activation mechanism.
Date: September 15, 1993
Creator: Dennis, Patrick B. & Masaracchia, Ruthann A.
Object Type: Article
System: The UNT Digital Library
Experimental and Computational Preference for Phosphine Regioselectivity and Stereoselective Tripodal Rotation in Hos₃(Co)₈(PPh₃)₂(μ-1,2-N,Cη-¹,ᴋ¹-C₇H₄NS) (open access)

Experimental and Computational Preference for Phosphine Regioselectivity and Stereoselective Tripodal Rotation in Hos₃(Co)₈(PPh₃)₂(μ-1,2-N,Cη-¹,ᴋ¹-C₇H₄NS)

This article investigates the site preference for ligand substitution in the benzothiazolate-bridged cluster HOs₃(CO)₁₀(μ-1,2-N,Cη-¹,ᴋ¹-C₇H₄NS) using PPh₃.
Date: September 12, 2018
Creator: Begum, Shahin A.; Chowdhury, Md. Arshad H.; Ghosh, Shishir; Tocher, Derek A.; Richmond, Michael G.; Yang, Li et al.
Object Type: Article
System: The UNT Digital Library
Critical Developmental Windows for Morphology and Hematology Revealed by Intermittent and Continuous Hypoxic Incubation in Embryos of Quail (Coturnix Coturnix) (open access)

Critical Developmental Windows for Morphology and Hematology Revealed by Intermittent and Continuous Hypoxic Incubation in Embryos of Quail (Coturnix Coturnix)

This article describes the exposure of quail embryos in the intact egg to hypoxia during "early" or "late" incubation for their entire 16-18 day incubation to determine critical windows for viability and growth.
Date: November 14, 2016
Creator: Burggren, Warren W. & Elmonoufy, Nourhan
Object Type: Article
System: The UNT Digital Library
A Combined Metabolomics and Fluxomics Analysis Identifies Steps Limiting Oil Synthesis in Maize Embryos (open access)

A Combined Metabolomics and Fluxomics Analysis Identifies Steps Limiting Oil Synthesis in Maize Embryos

Article comparing the metabolism of embryos from two different maize lines, Alex and LH59, to test the hypothesis that directly changing their carbon metabolism may be the key to increasing oil content in maize kernels without affecting yield.
Date: September 17, 2019
Creator: Alonso, Ana Paula; Cocuron, Jean-Christophe; Koubaa, Mohamed; Kimmelfield, Rebecca & Ross, Zacchary
Object Type: Article
System: The UNT Digital Library

Artificially structured boundary plasma trap

This article presents a computer simulation of single-species non-neutral plasma confinement using an artificially structured boundary. The results support the prospect of developing plasma space-charge based confinement, with an unmagnetized plasma of one species of charged particles confined by an electric field produced by an edge-confined plasma of a second species of charged particles.
Date: September 20, 2019
Creator: Hedlof, R. M. & Ordonez, Carlos A.
Object Type: Article
System: The UNT Digital Library
Urban edge trees: Urban form and meteorology drive elemental carbon deposition to canopies and soils (open access)

Urban edge trees: Urban form and meteorology drive elemental carbon deposition to canopies and soils

Article asserts that urban tree canopies are a significant sink for atmospheric elemental carbon (EC)--and air pollutant that is a powerful climate-forcing agent and threat to human health. The authors' findings indicate that complex configurations of roads, buildings, and vegetation produce “urban edge trees” that contribute to heterogeneous EC deposition patterns across urban systems, with implications for greenspace planning.
Date: September 27, 2022
Creator: Ponette-González, Alexandra G.; Chen, Dongmei; Elderbrock, Evan; Rindy, Jenna E.; Barrett, Tate E.; Luce, Brett W. et al.
Object Type: Article
System: The UNT Digital Library