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Deep learning for peptide identification from metaproteomics datasets (open access)

Deep learning for peptide identification from metaproteomics datasets

This article explores a proposed deep-learning-based algorithm called DeepFilter for improving peptide identifications from a collection of tandem mass spectra. The authors find that DeepFilter is believed to generalize properly to new, previously unseen peptide-spectrum-matches and can be readily applied in peptide identification from metaproteomics data.
Date: July 8, 2021
Creator: Feng, Shichao; Sterzenbach, Ryan & Guo, Xuan
System: The UNT Digital Library
Effect of amorphous cellulose on the deformation behavior of cellulose composites: molecular dynamics simulation (open access)

Effect of amorphous cellulose on the deformation behavior of cellulose composites: molecular dynamics simulation

This article is a study aimed at predicting and enhancing the properties of the blend, as well as exploring the mechanism, of a polylactic acid (PLA)/amorphous cellulose composite system through molecular characterization. The static properties of the amorphous cellulose/PLA blend model and the mechanical response of the material under uniaxial tension were studied by molecular dynamics simulation to establish the structure–property relationship.
Date: June 8, 2021
Creator: Ren, Zechun; Guo, Rui; Zhou, Xinyuan; Bi, Hongjie; Jia, Xin; Xu, Min et al.
System: The UNT Digital Library
Ion-exchange mechanisms and interfacial reaction kinetics during aqueous corrosion of sodium silicate glasses (open access)

Ion-exchange mechanisms and interfacial reaction kinetics during aqueous corrosion of sodium silicate glasses

Article on the ion-exchange and associated interfacial reaction mechanisms of silicate glasses. This work reports findings that shed light on the complex ion-exchange mechanisms during glass hydration and enables more detailed understanding of the corrosion and glass-water interactions of silicate glasses which has the potential to impact both science and technology.
Date: April 8, 2021
Creator: Deng, Lu; Miyatani, Katsuaki; Suehara, Michinori; Amma, Shin-ichi; Ono, Madoka; Urata, Shingo et al.
System: The UNT Digital Library
Protein functional module identification method combining topological features and gene expression data (open access)

Protein functional module identification method combining topological features and gene expression data

Article conducting an intensive study on the problems of low recognition efficiency and noise in the overlapping structure of protein functional modules, based on topological characteristics of PPI network. Developing a protein function module recognition method ECTG based on Topological Features and Gene expression data for Protein Complex Identification. The experimental results show that the ECTG algorithm can detect protein functional modules better.
Date: June 8, 2021
Creator: Zhao, Zihao; Xu, Wenjun; Chen, Aiwen; Han, Yueyue; Xia, Shengrong; Xiang, ChuLei et al.
System: The UNT Digital Library