This dissertation presents a data-driven computational epidemic framework to simulate disease epidemics at global mass gatherings. The annual Muslim pilgrimage to Makkah, Saudi Arabia is used to demonstrate the simulation and analysis of various disease transmission scenarios throughout the different stages of the event from the arrival to the departure of international participants. The proposed agent-based epidemic model efficiently captures the demographic, spatial, and temporal heterogeneity at each stage of the global event of Hajj. Experimental results indicate the substantial impact of the demographic and mobility patterns of the heterogeneous population of pilgrims on the progression of the disease spread in the different stages of Hajj. In addition, these simulations suggest that the differences in the spatial and temporal settings in each stage can significantly affect the dynamic of the disease. Finally, the epidemic simulations conducted at the different stages in this dissertation illustrate the impact of the differences between the duration of each stage in the event and the length of the infectious and latent periods. This research contributes to a better understanding of epidemic modeling in the context of global mass gatherings to predict the risk of disease pandemics caused by associated international travel. The computational modeling and …

Dengue mitigation is a major research area among scientist who are working towards an effective management of the dengue epidemic. An effective dengue mitigation requires several other important components. These components include an accurate epidemic modeling, an efficient epidemic prediction, and an efficient resource allocation for controlling of the spread of the dengue disease. Past studies assumed homogeneous response pattern of the dengue epidemic to climate conditions throughout the regions. The dengue epidemic is climate dependent and also it is geographically dependent. A global model is not sufficient to capture the local variations of the epidemic. We propose a novel method of epidemic modeling considering local variation and that uses micro ensemble of regressors for each region. There are three regressors that are used in the construction of the ensemble. These are support vector regression, ordinary least square regression, and a k-nearest neighbor regression. The best performing regressors get selected into the ensemble. The proposed ensemble determines the risk of dengue epidemic in each region in advance. The risk is then used in risk-based resource allocation. The proposing resource allocation is built based on the genetic algorithm. The algorithm exploits the genetic algorithm with major modifications to its main components, …

With the advent of information explosion age, larger capacity disk drives are used to store data and powerful devices are used to process big data. As the scale and complexity of computer systems increase, we expect these systems to provide dependable and energy-efficient services and computation. Although hard drives are reliable in general, they are the most commonly replaced hardware components. Disk failures cause data corruption and even data loss, which can significantly affect system performance and financial losses. In this dissertation research, I analyze different manifestations of disk failures in production data centers and explore data mining techniques combined with statistical analysis methods to discover categories of disk failures and their distinctive properties. I use similarity measures to quantify the degradation process of each failure type and derive the degradation signature. The derived degradation signatures are further leveraged to forecast when future disk failures may happen. Meanwhile, this dissertation also studies energy efficiency of high performance computers. Specifically, I characterize the power and energy consumption of Haswell processors which are used in multiple supercomputers, and analyze the power and energy consumption of Legion, a data-centric programming model and runtime system, and Legion applications. We find that power and energy …

Modern cities are undergoing rapid expansion. The number of connected devices in the networks in and around these cities is increasing every day and will exponentially increase in the next few years. At home, the number of connected devices is also increasing with the introduction of home automation appliances and applications. Many of these appliances are becoming smart devices which can track our daily routines. It is imperative that all these devices should be secure. When cryptographic keys used for encryption and decryption are stored on memory present on these devices, they can be retrieved by attackers or adversaries to gain control of the system. For this purpose, Physical Unclonable Functions (PUFs) were proposed to generate the keys required for encryption and decryption of the data or the communication channel, as required by the application. PUF modules take advantage of the manufacturing variations that are introduced in the Integrated Circuits (ICs) during the fabrication process. These are used to generate the cryptographic keys which reduces the use of a separate memory module to store the encryption and decryption keys. A PUF module can also be recon gurable such that the number of input output pairs or Challenge Response Pairs (CRPs) …

In my dissertation, I elaborate on the work that I have done to extract temporally-anchored spatial knowledge from text, including both intra- and inter-sentential knowledge. I also detail multiple approaches to infer spatial timeline of a person from biographies and social media. I present and analyze two strategies to annotate information regarding whether a given entity is or is not located at some location, and for how long with respect to an event. Specifically, I leverage semantic roles or syntactic dependencies to generate potential spatial knowledge and then crowdsource annotations to validate the potential knowledge. The resulting annotations indicate how long entities are or are not located somewhere, and temporally anchor this spatial information. I present an in-depth corpus analysis and experiments comparing the spatial knowledge generated by manipulating roles or dependencies. In my work, I also explore research methodologies that go beyond single sentences and extract spatio-temporal information from text. Spatial timelines refer to a chronological order of locations where a target person is or is not located. I present corpus and experiments to extract spatial timelines from Wikipedia biographies. I present my work on determining locations and the order in which they are actually visited by a person …

In this work, I characterized a series of potential application kernels using a set of architectural and non-architectural metrics, and performed a comparison of four different alternatives for processing-in-memory cores (PIMs): ARM cores, GPGPUs, coarse-grained reconfigurable dataflow (DF-PIM), and a domain specific architecture using SIMD PIM engine consisting of a series of multiply-accumulate circuits (MACs). For each PIM alternative I investigated how performance and energy efficiency changes with respect to a series of system parameters, such as memory bandwidth and latency, number of PIM cores, DVFS states, cache architecture, etc. In addition, I compared the PIM core choices for a subset of applications and discussed how the application characteristics correlate to the achieved performance and energy efficiency. Furthermore, I compared the PIM alternatives to a host-centric solution that uses a traditional server-class CPU core or PIM-like cores acting as host-side accelerators instead of being part of 3D-stacked memories. Such insights can expose the achievable performance limits and shortcomings of certain PIM designs and show sensitivity to a series of system parameters (available memory bandwidth, application latency and bandwidth sensitivity, etc.). In addition, identifying the common application characteristics for PIM kernels provides opportunity to identify similar types of computation patterns in …

The thesis simulates the problem of network connectivity that occurs due to the dynamic nature of a network during flight. Nine nodes are provided with initial positions and are flown based on the path provided by leader-follower control algorithm using the server-client model. The application layer provides a point to point connection between the server and client and by using socket programming in the transport layer, a server and clients are established. Each node performs a neighbor discovery to discover its neighbors in the data link layer and physical layer performs the CSMA/CA using RTS/CTS. Finally, multi hop routing is achieved in network layer. Each client connects with server at dedicated interval to share each other location and then moves to next location. This process is continued over a period of several iterations until the relative distance is achieved. The constraints and limitations of the technology are network connectivity is lack of flexibility for random location of nodes, links established with a distant node having single neighbor is unstable. Performance of a system decreases with increase in number of nodes.

Consumer's opinions and sentiments on products can reflect the performance of products in general or in various aspects. Analyzing these data is becoming feasible, considering the availability of immense data and the power of natural language processing. However, retailers have not taken full advantage of online comments. This work is dedicated to a solution for automatically analyzing and summarizing these valuable data at both product and category levels. In this research, a system was developed to retrieve and analyze extensive data from public online resources. A parallel framework was created to make this system extensible and efficient. In this framework, a star topological network was adopted in which each computing unit was assigned to retrieve a fraction of data and to assess sentiment. Finally, the preprocessed data were collected and summarized by the central machine which generates the final result that can be rendered through a web interface. The system was designed to have sound performance, robustness, manageability, extensibility, and accuracy.

Negation is a complex phenomenon present in all human languages, allowing for the uniquely human capacities of denial, contradiction, misrepresentation, lying, and irony. It is in the first place a phenomenon of semantical opposition. Sentences containing negation are generally (a) less informative than affirmative ones, (b) morphosyntactically more marked—all languages have negative markers while only a few have affirmative markers, and (c) psychologically more complex and harder to process. Negation often conveys positive meaning. This meaning ranges from implicatures to entailments. In this dissertation, I develop a system to reveal the underlying positive interpretation of negation. I first identify which words are intended to be negated (i.e, the focus of negation) and second, I rewrite those tokens to generate an actual positive interpretation. I identify the focus of negation by scoring probable foci along a continuous scale. One of the obstacles to exploring foci scoring is that no public datasets exist for this task. Thus, to study this problem I create new corpora. The corpora contain verbal, nominal and adjectival negations and their potential positive interpretations along with their scores ranging from 1 to 5. Then, I use supervised learning models for scoring the focus of negation. In order to …

In this dissertation, we present a number of studies that primarily focus on data movement challenges among different types of memories (viz., 3D-DRAM, DDRx DRAM and NVM) employed together as a flat-address heterogeneous memory system. We introduce two different hardware-based techniques for prefetching data from slow off-chip phase change memory (PCM) to fast on-chip memories. The prefetching techniques efficiently fetch data from PCM and place that data into processor-resident or 3D-DRAM-resident buffers without putting high demand on bandwidth and provide significant performance improvements. Next, we explore different page migration techniques for flat-address memory systems which differ in when to migrate pages (i.e., periodically or instantaneously) and how to manage the migrations (i.e., OS-based or hardware-based approach). In the first page migration study, we present several epoch-based page migration policies for different organizations of flat-address memories consisting of two (2-level) and three (3-level) types of memory modules. These policies have resulted in significant energy savings. In the next page migration study, we devise an efficient "on-the-fly'" page migration technique which migrates a page from slow PCM to fast 3D-DRAM whenever it receives a certain number of memory accesses without waiting for any specific time interval. Furthermore, we present a light-weight hardware-assisted …

Joint detection is vital for characterizing human pose and serves as a foundation for a wide range of computer vision applications such as physical training, health care, entertainment. This dissertation proposed two methods to detect joints in the human body for pose analysis. The first method detects joints by combining body model and automatic feature points detection together. The human body model maps the detected extreme points to the corresponding body parts of the model and detects the position of implicit joints. The dominant joints are detected after implicit joints and extreme points are located by a shortest path based methods. The main contribution of this work is a hybrid framework to detect joints on the human body to achieve robustness to different body shapes or proportions, pose variations and occlusions. Another contribution of this work is the idea of using geodesic features of the human body to build a model for guiding the human pose detection and estimation. The second proposed method detects joints by segmenting human body into parts first and then detect joints by making the detection algorithm focusing on each limb. The advantage of applying body part segmentation first is that the body segmentation method narrows …

Human body is a complex system organized at different levels such as cells, tissues and organs, which contributes to 11 important organ systems. The functional efficiency of this complex system is evaluated as health. Traditional healthcare is unable to accommodate everyone's need due to the ever-increasing population and medical costs. With advancements in technology and medical research, traditional healthcare applications are shaping into smart healthcare solutions. Smart healthcare helps in continuously monitoring our body parameters, which helps in keeping people health-aware. It provides the ability for remote assistance, which helps in utilizing the available resources to maximum potential. The backbone of smart healthcare solutions is Internet of Things (IoT) which increases the computing capacity of the real-world components by using cloud-based solutions. The basic elements of these IoT based smart healthcare solutions are called "things." Things are simple sensors or actuators, which have the capacity to wirelessly connect with each other and to the internet. The research for this dissertation aims in developing architectures for these things, focusing on IoT-based smart healthcare solutions. The core for this dissertation is to contribute to the research in smart healthcare by identifying applications which can be monitored remotely. For this, application-specific thing architectures …

Online health communities (OHCs) have become a medium for patients to share their personal experiences and interact with peers on topics related to a disease, medication, side effects, and therapeutic processes. Many studies show that using OHCs regularly decreases mortality and improves patients mental health. As a result of their benefits, OHCs are a popular place for patients to refer to, especially patients with a severe disease, and to receive emotional and informational support. The main reasons for developing OHCs are to present valid and high-quality information and to understand the mechanism of social support in changing patients' mental health. Given the purpose of OHC moderators for developing OHCs applications and the purpose of patients for using OHCs, there is no facility, feature, or sub-application in OHCs to satisfy patient and moderator goals. OHCs are only equipped with a primary search engine that is a keyword-based search tool. In other words, if a patient wants to obtain information about a side-effect, he/she needs to browse many threads in the hope that he/she can find several related comments. In the same way, OHC moderators cannot browse all information which is exchanged among patients to validate their accuracy. Thus, it is critical …

Component failures can result in catastrophic behaviors in safety critical embedded systems, sometimes resulting in loss of life. Component failures can be treated as off nominal behaviors (ONBs) with respect to the components and sub systems involved in an embedded system. A lot of research is being carried out to tackle the problem of ONBs. These approaches are mainly focused on the states (i.e., desired and undesired states of a system at a given point of time to detect ONBs). In this paper, an approach is discussed to detect component failures and critical components of an embedded system. The approach is based on fault tree analysis (FTA), applied to the requirements specification of embedded systems at design time to find out the relationship between individual component failures and overall system failure. FTA helps in determining both qualitative and quantitative relationship between component failures and system failure. Analyzing the system at design time helps in detecting component failures and critical components and helps in devising strategies to mitigate component failures at design time and improve overall safety and reliability of a system.

The rapid advancement of web and mobile application technologies has recently posed numerous challenges to the Software Engineering community, including how to cost-effectively test applications that have complex event spaces. Many software testing techniques attempt to cost-effectively improve the quality of such software. This dissertation primarily focuses on that of hybrid test suite prioritization. The techniques utilize two or more criteria to perform test suite prioritization as it is often insufficient to use only a single criterion. The dissertation consists of the following contributions: (1) a weighted test suite prioritization technique that employs the distance between criteria as a weighting factor, (2) a coarse-to-fine grained test suite prioritization technique that uses a multilevel approach to increase the granularity of the criteria at each subsequent iteration, (3) the Caret-HM tool for Android user session-based testing that allows testers to record, replay, and create heat maps from user interactions with Android applications via a web browser, and (4) Android user session-based test suite prioritization techniques that utilize heuristics developed from user sessions created by Caret-HM. Each of the chapters empirically evaluate the respective techniques. The proposed techniques generally show improved or equally good performance when compared to the baselines, depending on an …

Biological emergency response planning plays a critical role in protecting the public from possible devastating results of sudden disease outbreaks. These plans describe the distribution of medical countermeasures across a region using limited resources within a restricted time window. Thus, the ability to determine that such a plan will be feasible, i.e. successfully provide service to affected populations within the time limit, is crucial. Many of the current efforts to validate plans are in the form of live drills and training, but those may not test plan activation at the appropriate scale or with sufficient numbers of participants. Thus, this necessitates the use of computational resources to aid emergency managers and planners in developing and evaluating plans before they must be used. Current emergency response plan generation software packages such as RE-PLAN or RealOpt, provide rate-based validation analyses. However, these types of analysis may neglect details of real-world traffic dynamics. Therefore, this dissertation presents Validating Emergency Response Plan Execution Through Simulation (VERPETS), a novel, computational system for the agent-based simulation of biological emergency response plan activation. This system converts raw road network, population distribution, and emergency response plan data into a format suitable for simulation, and then performs these simulations …

Mobile applications are growing in popularity and pose new problems in the area of software testing. In particular, mobile applications heavily depend upon user interactions and a dynamically changing environment of system events. In this thesis, we focus on user-driven events and use Q-learning, a reinforcement machine learning algorithm, to generate tests for Android applications under test (AUT). We implement a framework that automates the generation of GUI test cases by using our Q-learning approach and compare it to a uniform random (UR) implementation. A novel feature of our approach is that we generate user-driven event sequences through the GUI, without the source code or the model of the AUT. Hence, considerable amount of cost and time are saved by avoiding the need for model generation for generating the tests. Our results show that the systematic path exploration used by Q-learning results in higher average code coverage in comparison to the uniform random approach.

In recent years, brain computer interfaces (BCIs) have gained popularity in non-medical domains such as the gaming, entertainment, personal health, and marketing industries. A growing number of companies offer various inexpensive consumer grade BCIs and some of these companies have recently introduced the concept of BCI "App stores" in order to facilitate the expansion of BCI applications and provide software development kits (SDKs) for other developers to create new applications for their devices. The BCI applications access to users' unique brainwave signals, which consequently allows them to make inferences about users' thoughts and mental processes. Since there are no specific standards that govern the development of BCI applications, its users are at the risk of privacy breaches. In this work, we perform first comprehensive analysis of BCI App stores including software development kits (SDKs), application programming interfaces (APIs), and BCI applications w.r.t privacy issues. The goal is to understand the way brainwave signals are handled by BCI applications and what threats to the privacy of users exist. Our findings show that most applications have unrestricted access to users' brainwave signals and can easily extract private information about their users without them even noticing. We discuss potential privacy threats posed by …

Virtual teams in industry are increasingly being used to develop software, create products, and accomplish tasks. However, analyzing those collaborations under same-time/different-place conditions is well-known to be difficult. In order to overcome some of these challenges, this research was concerned with the study of collaboration-based, content-based and temporal measures and their ability to predict cohesion within global software development projects. Messages were collected from three software development projects that involved students from two different countries. The similarities and quantities of these interactions were computed and analyzed at individual and group levels. Results of interaction-based metrics showed that the collaboration variables most related to Task Cohesion were Linguistic Style Matching and Information Exchange. The study also found that Information Exchange rate and Reply rate have a significant and positive correlation to Task Cohesion, a factor used to describe participants' engagement in the global software development process. This relation was also found at the Group level. All these results suggest that metrics based on rate can be very useful for predicting cohesion in virtual groups. Similarly, content features based on communication categories were used to improve the identification of Task Cohesion levels. This model showed mixed results, since only Work similarity and …

This work describes an approach to determine whether people participate in the events they tweet about. Specifically, we determine whether people are participants in events with respect to the tweet timestamp. We target all events expressed by verbs in tweets, including past, present and events that may occur in future. We define event participant as people directly involved in an event regardless of whether they are the agent, recipient or play another role. We present an annotation effort, guidelines and quality analysis with 1,096 event mentions. We discuss the label distributions and event behavior in the annotated corpus. We also explain several features used and a standard supervised machine learning approach to automatically determine if and when the author is a participant of the event in the tweet. We discuss trends in the results obtained and devise important conclusions.

This work presents an investigation of a piezoelectric sensor based energy harvesting system, which collects energy from the surrounding environment. Increasing costs and scarcity of fossil fuels is a great concern today for supplying power to electronic devices. Furthermore, generating electricity by ordinary methods is a complicated process. Disposal of chemical batteries and cables is polluting the nature every day. Due to these reasons, research on energy harvesting from renewable resources has become mandatory in order to achieve improved methods and strategies of generating and storing electricity. Many low power devices being used in everyday life can be powered by harvesting energy from natural energy resources. Power overhead and power energy efficiency is of prime concern in electronic circuits. In this work, an energy harvester is modeled and simulated in Simscape™ for the functional analysis and comparison of achieved outcomes with previous work. Results demonstrate that the harvester produces power in the 0 μW to 100 μW range, which is an adequate amount to provide supply to low power devices. Power efficiency calculations also demonstrate that the implemented harvester is capable of generating and storing power for low power pervasive applications.

In recent years, social media platforms such as Twitter and Facebook have emerged as effective tools for broadcasting messages worldwide during disaster events. With millions of messages posted through these services during such events, it has become imperative to identify valuable information that can help the emergency responders to develop effective relief efforts and aid victims. Many studies implied that the role of social media during disasters is invaluable and can be incorporated into emergency decision-making process. However, due to the "big data" nature of social media, it is very labor-intensive to employ human resources to sift through social media posts and categorize/classify them as useful information. Hence, there is a growing need for machine intelligence to automate the process of extracting useful information from the social media data during disaster events. This dissertation addresses the following questions: In a social media stream of messages, what is the useful information to be extracted that can help emergency response organizations to become more situationally aware during and following a disaster? What are the features (or patterns) that can contribute to automatically identifying messages that are useful during disasters? We explored a wide variety of features in conjunction with supervised learning algorithms …

This thesis describes an approach for object recognition using the chordiogram shape-based descriptor. Global shape representations are highly susceptible to clutter generated due to the background or other irrelevant objects in real-world images. To overcome the problem, we aim to extract precise object shape using superpixel segmentation, perceptual grouping, and connected components. The employed shape descriptor chordiogram is based on geometric relationships of chords generated from the pairs of boundary points of an object. The chordiogram descriptor applies holistic properties of the shape and also proven suitable for object detection and digit recognition mechanisms. Additionally, it is translation invariant and robust to shape deformations. In spite of such excellent properties, chordiogram is not scale-invariant. To this end, we propose scale invariant chordiogram descriptors and intend to achieve a similar performance before and after applying scale invariance. Our experiments show that we achieve similar performance with and without scale invariance for silhouettes and real world object images. We also show experiments at different scales to confirm that we obtain scale invariance for chordiogram.

The outbreak of the Ebola virus was declared a Public Health Emergency of International Concern by the World Health Organisation (WHO). Due to the complex nature of the outbreak, the Centers for Disease Control and Prevention (CDC) had created interim guidance for monitoring people potentially exposed to Ebola and for evaluating their intended travel and restricting the movements of carriers when needed. Tools to evaluate the risk of individuals and groups of individuals contracting the disease could mitigate the growing anxiety and fear. The goal is to understand and analyze the nature of risk an individual would face when he/she comes in contact with a carrier. This thesis presents a tool that makes use of contextual data intelligence to predict the risk factor of individuals who come in contact with the carrier.