The contact patterns among individuals can significantly affect the progress of an infectious outbreak within a population. Gathering data about these interaction and mixing patterns is essential to assess computational modeling of infectious diseases. Various self-report approaches have been designed in different studies to collect data about contact rates and patterns. Recent advances in sensing technology provide researchers with a bilateral automated data collection devices to facilitate contact gathering overcoming the disadvantages of previous approaches. In this study, a novel unilateral wearable sensing architecture has been proposed that overcome the limitations of the bi-lateral sensing. Our unilateral wearable sensing system gather contact data using hybrid sensor arrays embedded in wearable shirt. A smartphone application has been used to transfer the collected sensors data to the cloud and apply deep learning model to estimate the number of human contacts and the results are stored in the cloud database. The deep learning model has been developed on the hand labelled data over multiple experiments. This model has been tested and evaluated, and these results were reported in the study. Sensitivity analysis has been performed to choose the most suitable image resolution and format for the model to estimate contacts and to analyze …

This dissertation emphasizes the security aspects of real-time media. The problems of existing real-time media protections are identified in this research, and viable solutions are proposed. First, the security of real-time media depends on the Secure Real-time Transport Protocol (SRTP) mechanism. We identified drawbacks of the existing SRTP Systems, which use symmetric key encryption schemes, which can be exploited by attackers. Elliptic Curve Cryptography (ECC), an asymmetric key cryptography scheme, is proposed to resolve these problems. Second, the ECC encryption scheme is based on elliptic curves. This dissertation explores the weaknesses of a widely used elliptic curve in terms of security and describes a more secure elliptic curve suitable for real-time media protection. Eighteen elliptic curves had been tested in a real-time video transmission system, and fifteen elliptic curves had been tested in a real-time audio transmission system. Based on the performance, X9.62 standard 256-bit prime curve, NIST-recommended 256-bit prime curves, and Brainpool 256-bit prime curves were found to be suitable for real-time audio encryption. Again, X9.62 standard 256-bit prime and 272-bit binary curves, and NIST-recommended 256-bit prime curves were found to be suitable for real-time video encryption.The weaknesses of NIST-recommended elliptic curves are discussed and a more secure new …

The solutions presented in this dissertation describe a new paradigm in which we shepherd these network security protocols through atmosphere transitions, offering new ways to analyze and monitor the state of the protocol. The approach involves identifying a protocols transitional weaknesses through adaption of formal models, measuring the weakness as it exists in the wild by statically analyzing applications, and show how to use network traffic analysis to monitor protocol implementations going into the future. Throughout the effort, we follow the popular Open Authorization protocol in its attempts to apply its web-based roots to a mobile atmosphere. To pinpoint protocol deficiencies, we first adapt a well regarded formal analysis and show it insufficient in the characterization of mobile applications, tying its transitional weaknesses to implementation issues and delivering a reanalysis of the proof. We then measure the prevalence of this weakness by statically analyzing over 11,000 Android applications. While looking through source code, we develop new methods to find sensitive protocol information, overcome hurdles like obfuscation, and provide interfaces for later modeling, all while achieving a false positive rate of below 10 percent. We then use network analysis to detect and verify application implementations. By collecting network traffic from Android …

High-performance computing (HPC) systems continue growing in both scale and complexity. These large-scale, heterogeneous systems generate tens of millions of log messages every day. Effective log analysis for understanding system behaviors and identifying system anomalies and failures is highly challenging. Existing log analysis approaches use line-by-line message processing. They are not effective for discovering subtle behavior patterns and their transitions, and thus may overlook some critical anomalies. In this dissertation research, I propose a system log event block detection (SLEBD) method which can extract the log messages that belong to a component or system event into an event block (EB) accurately and automatically. At the event level, we can discover new event patterns, the evolution of system behavior, and the interaction among different system components. To find critical event sequences, existing sequence mining methods are mostly based on the a priori algorithm which is compute-intensive and runs for a long time. I develop a novel, topology-aware sequence mining (TSM) algorithm which is efficient to generate sequence patterns from the extracted event block lists. I also train a long short-term memory (LSTM) model to cluster sequences before specific events. With the generated sequence pattern and trained LSTM model, we can predict …

This dissertation presents spatial partitioning algorithms to solve location-allocation problems. Location-allocations problems pertain to both the selection of facilities to serve demand at demand points and the assignment of demand points to the selected or known facilities. In the first part of this dissertation, we focus on the well known and well-researched location-allocation problem, the "p-median problem", which is a distance-based location-allocation problem that involves selection and allocation of p facilities for n demand points. We evaluate the performance of existing p-median heuristic algorithms and investigate the impact of the scale of the problem, and the spatial distribution of demand points on the performance of these algorithms. Based on the results from this comparative study, we present guidelines for location analysts to aid them in selecting the best heuristic and corresponding parameters depending on the problem at hand. Additionally, we found that existing heuristic algorithms are not suitable for solving large-scale p-median problems in a reasonable amount of time. We present a density-based decomposition methodology to solve large-scale p-median problems efficiently. This algorithm identifies dense clusters in the region and uses a MapReduce procedure to select facilities in the clustered regions independently and combine the solutions from the subproblems. Lastly, …

Word embeddings is a useful method that has shown enormous success in various NLP tasks, not only in open domain but also in biomedical domain. The biomedical domain provides various domain specific resources and tools that can be exploited to improve performance of these word embeddings. However, most of the research related to word embeddings in biomedical domain focuses on analysis of model architecture, hyper-parameters and input text. In this paper, we use SemMedDB to design new sentences called `Semantic Sentences'. Then we use these sentences in addition to biomedical text as inputs to the word embedding model. This approach aims at introducing biomedical semantic types defined by UMLS, into the vector space of word embeddings. The semantically rich word embeddings presented here rivals state of the art biomedical word embedding in both semantic similarity and relatedness metrics up to 11%. We also demonstrate how these semantic types in word embeddings can be utilized.

A malicious actor often relies on security vulnerabilities of IT systems to launch a cyber attack. Most cloud services are supported by an orchestration of large and complex systems which are prone to vulnerabilities, making threat assessment very challenging. In this research, I developed formal and practical ontology-based techniques that enable automated evaluation of a cloud system's security threats. I use an architecture for threat assessment of cloud systems that leverages a dynamically generated ontology knowledge base. I created an ontology model and represented the components of a cloud system. These ontologies are designed for a set of domains that covers some cloud's aspects and information technology products' cyber threat data. The inputs to our architecture are the configurations of cloud assets and components specification (which encompass the desired assessment procedures) and the outputs are actionable threat assessment results. The focus of this work is on ways of enumerating, assessing, and mitigating emerging cyber security threats. A research toolkit system has been developed to evaluate our architecture. We expect our techniques to be leveraged by any cloud provider or consumer in closing the gap of identifying and remediating known or impending security threats facing their cloud's assets.

Recent advancements in machine learning have started to put their mark on educational technology. Technology is evolving fast and, as people adopt it, schools and universities must also keep up (nearly 70% of primary and secondary schools in the UK are now using tablets for various purposes). As these numbers are likely going to follow the same increasing trend, it is imperative for schools to adapt and benefit from the advantages offered by technology: real-time processing of data, availability of different resources through connectivity, efficiency, and many others. To this end, this work contributes to the growth of educational technology by developing several algorithms and models that are meant to ease several tasks for the instructors, engage students in deep discussions and ultimately, increase their learning gains. First, a novel, fine-grained knowledge representation is introduced that splits phrases into their constituent propositions that are both meaningful and minimal. An automated extraction algorithm of the propositions is also introduced. Compared with other fine-grained representations, the extraction model does not require any human labor after it is trained, while the results show considerable improvement over two meaningful baselines. Second, a proposition alignment model is created that relies on even finer-grained units of …

Software defects can frequently be traced to poorly-specified requirements. Many software teams manage their requirements using tools such as checklists and databases, which lack a formal semantic mapping to system behavior. Such a mapping can be especially helpful for safety-critical systems. Another limitation of many requirements analysis methods is that much of the analysis must still be done manually. We propose techniques that automate portions of the requirements analysis process, as well as clarify the syntax and semantics of requirements models using a variety of methods, including machine learning tools and our own tool, VeriCCM. The machine learning tools used help us identify potential model elements and verify their correctness. VeriCCM, a formalized extension of the causal component model (CCM), uses formal methods to ensure that requirements are well-formed, as well as providing the beginnings of a full formal semantics. We also explore the use of statecharts to identify potential abnormal behaviors from a given set of requirements. At each stage, we perform empirical studies to evaluate the effectiveness of our proposed approaches.

Malfunctions on loom machines are the main causes of faulty fabric production. An on-loom fabric inspection system is a real-time monitoring device that enables immediate defect detection for human intervention. This dissertation presented a solution for the on-loom fabric defect inspection, including the new hardware design—the configurable contact image sensor (CIS) module—for on-loom fabric scanning and the defect detection algorithms. The main contributions of this work include (1) creating a configurable CIS module adaptable to a loom width, which brings CIS unique features, such as sub-millimeter resolution, compact size, short working distance and low cost, to the fabric defect inspection system, (2) designing a two-level hardware architecture that can be efficiently deployed in a weaving factory with hundreds of looms, (3) developing a two-level inspecting scheme, with which the initial defect screening is performed on the Raspberry Pi and the intensive defect verification is processed on the cloud server, (4) introducing the novel pairwise-potential activation layer to a convolutional neural network that leads to high accuracies of defect segmentation on fabrics with fine and imbalanced structures, (5) achieving a real-time defect detection that allows a possible defect to be examined multiple times, and (6) implementing a new color segmentation technique …

This research methodology isolates coding properties and identifies the probability of security vulnerabilities using machine learning and historical data. Several approaches characterize the effectiveness of detecting security-related bugs that manifest as vulnerabilities, but none utilize vulnerability patch information. The main contribution of this research is a framework to analyze LLVM Intermediate Representation Code and merging core source code representations using source code properties. This research is beneficial because it allows source programs to be transformed into a graphical form and users can extract specific code properties related to vulnerable functions. The result is an improved approach to detect, identify, and track software system vulnerabilities based on a performance evaluation. The methodology uses historical function level vulnerability information, unique feature extraction techniques, a novel code property graph, and learning algorithms to minimize the amount of end user domain knowledge necessary to detect vulnerabilities in applications. The analysis shows approximately 99% precision and recall to detect known vulnerabilities in the National Institute of Standards and Technology (NIST) Software Assurance Metrics and Tool Evaluation (SAMATE) project. Furthermore, 72% percent of the historical vulnerabilities in the OpenSSL testing environment were detected using a linear support vector classifier (SVC) model.

Resilient networks have the ability to provide the desired level of service, despite challenges such as malicious attacks and misconfigurations. The primary goal of this dissertation is to be able to provide uninterrupted network services in the face of an attack or any failures. This dissertation attempts to apply control system theory techniques with a focus on system identification and closed-loop feedback control. It explores the benefits of system identification technique in designing and validating the model for the complex and dynamic networks. Further, this dissertation focuses on designing robust feedback control mechanisms that are both scalable and effective in real-time. It focuses on employing dynamic and predictive control approaches to reduce the impact of an attack on network services. The closed-loop feedback control mechanisms tackle this issue by degrading the network services gracefully to an acceptable level and then stabilizing the network in real-time (less than 50 seconds). Employing these feedback mechanisms also provide the ability to automatically configure the settings such that the QoS metrics of the network is consistent with those specified in the service level agreements.

An early detection of heart disease can save lives, caution individuals and also help to determine the type of treatment to be given to the patients. The first test of diagnosing a heart disease is through auscultation - listening to the heart sounds. The interpretation of heart sounds is subjective and requires a professional skill to identify the abnormalities in these sounds. A medical practitioner uses a stethoscope to perform an initial screening by listening for irregular sounds from the patient's chest. Later, echocardiography and electrocardiography tests are taken for further diagnosis. However, these tests are expensive and require specialized technicians to operate. A simple and economical way is vital for monitoring in homecare or rural hospitals and urban clinics. This dissertation is focused on developing a patient-centered device for initial screening of the heart sounds that is both low cost and can be used by the users on themselves, and later share the readings with the healthcare providers. An innovative mobile health service platform is created for analyzing and classifying heart sounds. Certain properties of heart sounds have to be evaluated to identify the irregularities such as the number of heart beats and gallops, intensity, frequency, and duration. Since …

A tremendous amount of information is being shared every day on social media sites such as Facebook, Twitter or Google+. However, only a small portion of users provide their location information, which can be helpful in targeted advertising and many other services. Current methods in location estimation using social relationships consider social friendship as a simple binary relationship. However, social closeness between users and structure of friends have strong implications on geographic distances. In the first task, we introduce new measures to evaluate the social closeness between users and structure of friends. Then we propose models that use them for location estimation. Compared with the models which take the friend relation as a binary feature, social closeness can help identify which friend of a user is more important and friend structure can help to determine significance level of locations, thus improving the accuracy of the location estimation models. A confidence iteration method is further introduced to improve estimation accuracy and overcome the problem of scarce location information. We evaluate our methods on two different datasets, Twitter and Gowalla. The results show that our model can improve the estimation accuracy by 5% - 20% compared with state-of-the-art friend-based models. In the …

The demand for higher data rates for indoor and cell-edge users led to evolution of small cells. LTE femtocells, one of the small cell categories, are low-power low-cost mobile base stations, which are deployed within the coverage area of the traditional macro base station. The cross-tier and co-tier interferences occur only when the macrocell and femtocell share the same frequency channels. Open access (OSG), closed access (CSG), and hybrid access are the three existing access-control methods that decide users' connectivity to the femtocell access point (FAP). We define a network performance function, network productivity, to measure the traffic that is carried successfully. In this dissertation, we evaluate call mobility in LTE integrated network and determine optimized network productivity with variable call arrival rate in given LTE deployment with femtocell access modes (OSG, CSG, HYBRID) for a given call blocking vector. The solution to the optimization is maximum network productivity and call arrival rates for all cells. In the second scenario, we evaluate call mobility in LTE integrated network with increasing femtocells and maximize network productivity with variable femtocells distribution per macrocell with constant call arrival rate in uniform LTE deployment with femtocell access modes (OSG, CSG, HYBRID) for a given …

Mobile applications play an important role in the dissemination of computing and information resources. They are often used in domains such as mobile banking, e-commerce, and health monitoring. Cost-effective testing techniques in these domains are critical. This dissertation contributes novel techniques for automatic construction of mobile application test suites. In particular, this work provides solutions that focus on the prohibitively large number of possible event sequences that must be sampled in GUI-based mobile applications. This work makes three major contributions: (1) an automated GUI testing tool, Autodroid, that implements a novel online approach to automatic construction of Android application test suites (2) probabilistic and combinatorial-based algorithms that systematically sample the input space of Android applications to generate test suites with GUI/context events and (3) empirical studies to evaluate the cost-effectiveness of our techniques on real-world Android applications. Our experiments show that our techniques achieve better code coverage and event coverage compared to random test generation. We demonstrate that our techniques are useful for automatic construction of Android application test suites in the absence of source code and preexisting abstract models of an Application Under Test (AUT). The insights derived from our empirical studies provide guidance to researchers and practitioners involved …

This dissertation provides an innovative mechanism to collaborate two geographically separated people on a physical task and a novel method to measure Complexity Index (CI) and calculate Minimal Complexity Index (MCI) of a collaboration protocol. The protocol is represented as a structure, and the information content of it is measured in bits to understand the complex nature of the protocol. Using the complexity metrics, one can analyze the performance of a collaborative system and a collaboration protocol. Security and privacy of the consumers are vital while seeking remote help; this dissertation also provides a novel authorization framework for dynamic access control of resources on an input-constrained appliance used for completing the physical task. Using the innovative Collaborative Appliance for REmote-help (CARE) and with the support of a remotely located expert, fifty-nine subjects with minimal or no prior mechanical knowledge are able to elevate a car for replacing a tire in an average time of six minutes and 53 seconds and with an average protocol complexity of 171.6 bits. Moreover, thirty subjects with minimal or no prior plumbing knowledge are able to change the cartridge of a faucet in an average time of ten minutes and with an average protocol complexity …

Epidemiologists rely on human interaction networks for determining states and dynamics of disease propagations in populations. However, such networks are empirical snapshots of the past. It will greatly benefit if human interaction networks are statistically predicted and dynamically created while an epidemic is in progress. We develop an application framework for the generation of human interaction networks and running epidemiological processes utilizing research on human mobility patterns and agent-based modeling. The interaction networks are dynamically constructed by incorporating different types of Random Walks and human rules of engagements. We explore the characteristics of the created network and compare them with the known theoretical and empirical graphs. The dependencies of epidemic dynamics and their outcomes on patterns and parameters of human motion and motives are encountered and presented through this research. This work specifically describes how the types and parameters of random walks define properties of generated graphs. We show that some configurations of the system of agents in random walk can produce network topologies with properties similar to small-world networks. Our goal is to find sets of mobility patterns that lead to empirical-like networks. The possibility of phase transitions in the graphs due to changes in the parameterization of agent …

The focus of this research is on the development of a real time application that uses a low cost EEG headset to measure a player's state of mind while they play a video game. Using data collected using the Emotiv EPOC headset, various EEG processing techniques are tested to find ways of measuring a person's engagement and arousal levels. The ability to measure a person's engagement and arousal levels provide an opportunity to develop a model that monitor a person's flow while playing video games. Identifying when certain events occur, like when the player dies, will make it easier to identify when a player has left a state of flow. The real time application Brainwave captures data from the wireless Emotiv EPOC headset. Brainwave converts the raw EEG data into more meaningful brainwave band frequencies. Utilizing the brainwave frequencies the program trains multiple machine learning algorithms with data designed to identify when the player dies. Brainwave runs while the player plays through a video gaming monitoring their engagement and arousal levels for changes that cause the player to leave a state of flow. Brainwave reports to researchers and developers when the player dies along with the identification of the players …

Automatically generating questions from text for educational purposes is an active research area in natural language processing. The automatic question generation system accompanying this dissertation is MARGE, which is a recursive acronym for: MARGE automatically reads generates and evaluates. MARGE generates questions from both individual sentences and the passage as a whole, and is the first question generation system to successfully generate meaningful questions from textual units larger than a sentence. Prior work in automatic question generation from text treats a sentence as a string of constituents to be rearranged into as many questions as allowed by English grammar rules. Consequently, such systems overgenerate and create mainly trivial questions. Further, none of these systems to date has been able to automatically determine which questions are meaningful and which are trivial. This is because the research focus has been placed on NLG at the expense of NLU. In contrast, the work presented here infuses the questions generation process with natural language understanding. From the input text, MARGE creates a meaning analysis representation for each sentence in a passage via the DeconStructure algorithm presented in this work. Questions are generated from sentence meaning analysis representations using templates. The generated questions are automatically …

The objective of this thesis is to design a model for a multi global navigation satellite system using Simulink. It explains a design procedure which includes the models for transmitter and receiver for two different navigation systems. To overcome the problem, where less number of satellites are visible to determine location degrades the performance of any positioning system significantly, this research has done to make use of multi GNSS satellite signals in one navigation receiver.

The use of electroencephalogram (EEG), an electrophysiological monitoring method for recording the brain activity, for authentication has attracted the interest of researchers for over a decade. In addition to exhibiting qualities of biometric-based authentication, they are revocable, impossible to mimic, and resistant to coercion attacks. However, EEG signals carry a wealth of information about an individual and can reveal private information about the user. This brings significant privacy issues to EEG-based authentication systems as they have access to raw EEG signals. This thesis proposes a privacy-preserving EEG-based authentication system that preserves the privacy of the user by not revealing the raw EEG signals while allowing the system to authenticate the user accurately. In that, perceptual hashing is utilized and instead of raw EEG signals, their perceptually hashed values are used in the authentication process. In addition to describing the authentication process, algorithms to compute the perceptual hash are developed based on two feature extraction techniques. Experimental results show that an authentication system using perceptual hashing can achieve performance comparable to a system that has access to raw EEG signals if enough EEG channels are used in the process. This thesis also presents a security analysis to show that perceptual hashing …

In modern society, computers are primarily interacted with via keyboards, touch screens, voice recognition, video analysis, and many others. For certain applications, these methods may be the most efficient interface. However, there are applications that we can conceive where a more natural interface could be convenient and connect humans and computers in a more intuitive and natural way. These applications are gesture recognition systems and range from the interpretation of sign language by a computer to virtual reality control. This Thesis proposes a gesture recognition system that primarily uses accelerometers to capture gestures from a tactical communications application. A segmentation algorithm is developed based on the accelerometer energy to segment these gestures from an input sequence. Using signal processing and machine learning techniques, the segments are reduced to mathematical features and classified with support vector machines. Experimental results show that the system achieves an overall gesture recognition accuracy of 98.9%. Additional methods, such as non-gesture recognition/suppression, are also proposed and tested.

There are several types of disorders that affect our colon’s ability to function properly such as colorectal cancer, ulcerative colitis, diverticulitis, irritable bowel syndrome and colonic polyps. Automatic detection of these diseases would inform the endoscopist of possible sub-optimal inspection during the colonoscopy procedure as well as save time during post-procedure evaluation. But existing systems only detects few of those disorders like colonic polyps. In this dissertation, we address the automatic detection of another important disorder called ulcerative colitis. We propose a novel texture feature extraction technique to detect the severity of ulcerative colitis in block, image, and video levels. We also enhance the current informative frame filtering methods by detecting water and bubble frames using our proposed technique. Our feature extraction algorithm based on accumulation of pixel value difference provides better accuracy at faster speed than the existing methods making it highly suitable for real-time systems. We also propose a hybrid approach in which our feature method is combined with existing feature method(s) to provide even better accuracy. We extend the block and image level detection method to video level severity score calculation and shot segmentation. Also, the proposed novel feature extraction method can detect water and bubble frames …