Bacterial Cyanide Assimilation: Pterin Cofactor and Enzymatic Requirements for Substrate Oxidation (open access)

Bacterial Cyanide Assimilation: Pterin Cofactor and Enzymatic Requirements for Substrate Oxidation

Utilization of cyanide as the sole nitrogen source by Pseudomonas fluorescens NCIMB 11764 (Pf11764) occurs via oxidative conversion to carbon dioxide and ammonia, the latter satisfying the nitrogen requirement. Substrate attack is initiated oxygenolytically by an enzyme referred to as cyanide oxygenase (CNO), which exhibits properties of a pterin-dependent hydroxylase. The pterin requirement for Pf11764 CNO was satisfied by supplying either the fully (tetrahydro) or partially (dihydro) reduced forms of various pterin compounds at catalytic concentrations (0.5 µM). These compounds included, for example, biopterin, monapterin and neopterin, all of which were also identified in cell extracts. A related CNO-mediated mechanism of cyanide utilization was identified in cyanide-degrading P. putida BCN3. This conclusion was based on (i) the recovery of CO2 and NH3 as enzymatic reaction products, (ii) the dependency of substrate conversion on both O2 and NADH, and (iiii) utilization of cyanide, O2 and NADH in a 1:1:1 reaction stoichiometry. In contrast to findings reported for Pf11764, it was not possible to demonstrate a need for exogenously added pterin as a cofactor for the PpBCN3 enzyme system. However, results which showed that cells of PpBCN3 contained approximately seven times the amount of pterin as Pf11764 (of which a significant portion …
Date: May 2004
Creator: Dolghih, Elena
System: The UNT Digital Library
Effects of Methanol, Atrazine, and Copper on the Ultrastructure of Pseudokirchneriella Subcapitata (Selenastrum Capricornutum). (open access)

Effects of Methanol, Atrazine, and Copper on the Ultrastructure of Pseudokirchneriella Subcapitata (Selenastrum Capricornutum).

The toxicity of methanol, atrazine, and copper to Pseudokirchneriella subcapitata (Korshikov) Hindák historically referred to as Selenastrum capricornutum Printz were determined following 96 hrs growth in a modified Goram's growth media. Methanol and atrazine inhibited fluorescence readings in the cultures by 50% (IC50) at concentrations of 2% and 82 µg/l respectively. These toxicity values compared favorably to other published reports. The IC50 for copper was 160 µg/l which is substantially higher than reported values. This is understandable because of the high chelating capacity of Goram's media. The use of stereologically derived relative volume in the chloroplasts, mitochondria, lipid bodies, phosphate bodies, and nucleus was investigated to determine if it could be used as a sensitive endpoint in toxicity tests. The volume fractions for the chloroplasts and mitochondria were normally distributed in control cells while the nuclei, phosphate bodies, and lipid bodies were not. The chloroplasts were the most dominate organelle occupying a mean relative volume of 46% and mitochondria occupied a mean relative volume of 3%. The nucleus and phosphate bodies occupied a median relative volume of 7% and 2% respectively. The lipid bodies were rare in section profile and no meaningful median relative volume could be calculated. Up to …
Date: May 2004
Creator: Garrett, David C.
System: The UNT Digital Library
Studies on actomyosin crossbridge flexibility using a new single molecule assay. (open access)

Studies on actomyosin crossbridge flexibility using a new single molecule assay.

Several key flexure sites exist in the muscle crossbridge including the actomyosin binding site which play important roles in the actomyosin crossbridge cycle. To distinguish between these sources of flexibility, a new single molecule assay was developed to observe the swiveling of rod about a single myosin. Myosins attached through a single crossbridge displayed mostly similar torsional characteristics compared to myosins attached through two crossbridges, which indicates that most of the torsional flexibility resides in the myosin subfragment-2, and thus the hinge between subfragment-2 and light meromyosin should contribute the most to this flexibility. The comparison of torsional characteristics in the absence and presence of ADP demonstrated a small but significant increase in twist rates for the double-headed myosins but no increase for single-headed myosins, which indicates that the ADP-induced increase in flexibility arises due to changes in the myosin head and verifies that most flexibility resides in myosin subfragment-2.
Date: May 2004
Creator: Gundapaneni, Deepika
System: The UNT Digital Library
Dissolved Organic Carbon Assessment on Selected Creeks and Rivers within the Elmfork Subwatersheds of Denton, Texas (open access)

Dissolved Organic Carbon Assessment on Selected Creeks and Rivers within the Elmfork Subwatersheds of Denton, Texas

The primary focus of the study was to compare dissolved organic carbon (DOC) at baseline stream flow to DOC at a higher post-rain stream flow, with a secondary focus on comparison of DOC between sites. Comparisons were also done on suspended solids at baseline flow to those of the higher post-rain flow, as well as suspended solids between sites. Significant differences did exist between DOC sampled at baseline flow and DOC in samples taken at peak flow. The study found no difference in suspended solids among sites neither on either baseflow sampling nor on the post rain event sampling.
Date: May 2004
Creator: Jackson, Pamela J.
System: The UNT Digital Library
Simulation of local watershed nutrient and sediment delivery to Lake Texoma. (open access)

Simulation of local watershed nutrient and sediment delivery to Lake Texoma.

A hydrologic model and watershed export model was used to estimate the loading of nutrients and total suspended solids from un-gaged local watersheds associated with Lake Texoma. Discharge to the reservoir from local watersheds was predicted using a modification of the curve number method in HEC Hydrologic Modeling System (HEC-HMS). Event mean concentrations were applied to land use to estimate loadings of nutrients and TSS. Total discharge from the local watersheds was estimated to be 3.02 x 107 cubic meters for a study window of March 1 to May 31, 1997, less than 10 percent of the input to the lake from the Red River and Washita River systems. Loadings were estimated to be 33,553 kg nitrogen, 4,401 kg phosphorus, and 3,423,140 kg TSS. The models and results obtained from their application appear to have potential utility for use in a water quality management decision support system for the reservoir.
Date: May 2004
Creator: Upton, Alexandra C.
System: The UNT Digital Library
Identification and quantification of lipid metabolites in cotton fibers: Reconciliation with metabolic pathway predictions from DNA databases. (open access)

Identification and quantification of lipid metabolites in cotton fibers: Reconciliation with metabolic pathway predictions from DNA databases.

The lipid composition of cotton (Gossypium hirsutum, L) fibers was determined. Fatty acid profiles revealed that linolenate and palmitate were the most abundant fatty acids present in fiber cells. Phosphatidylcholine was the predominant lipid class in fiber cells, while phosphatidylethanolamine, phosphatidylinositol and digalactosyldiacylglycerol were also prevalent. An unusually high amount of phosphatidic acid was observed in frozen cotton fibers. Phospholipase D activity assays revealed that this enzyme readily hydrolyzed radioactive phosphatidylcholine into phosphatidic acid. A profile of expressed sequence tags (ESTs) for genes involved in lipid metabolism in cotton fibers was also obtained. This EST profile along with our lipid metabolite data was used to predict lipid metabolic pathways in cotton fiber cells.
Date: May 2004
Creator: Wanjie, Sylvia W.
System: The UNT Digital Library
Density, Distribution and Habitat Requirements for the Ozark Pocket Gopher (Geomys Bursarius Ozarkensis) (open access)

Density, Distribution and Habitat Requirements for the Ozark Pocket Gopher (Geomys Bursarius Ozarkensis)

A new subspecies of the plains pocket gopher (Geomys bursarius ozarkensis), located in the Ozark Mountains of north central Arkansas, was recently described by Elrod et al. (2000). Current range for G. b. ozarkensis was established, habitat preference was assessed by analyzing soil samples, vegetation and distance to stream and potential pocket gopher habitat within the current range was identified. A census technique was used to estimate a total density of 3, 564 pocket gophers. Through automobile and aerial survey 51 known fields of inhabitance were located extending the range slightly. Soil analyses indicated loamy sand as the most common texture with a slightly acidic pH and a broad range of values for other measured soil parameters and 21 families of vegetation were identified. All inhabited fields were located within an average of 107.2m from waterways and over 1,600 hectares of possible suitable habitat was identified.
Date: May 2004
Creator: Kershen, Audrey Allbach
System: The UNT Digital Library