The analysis of protein residues recovered from archaeological artifacts provides a unique opportunity to reveal new information about past societies. However, many scientists are currently unwilling to accept protein-based results due to problems in method development and a basic lack of agreement regarding the ability of proteins to bind to, and preserve within, artifacts such as pottery. In this paper, I address these challenges by conducting a two-phase experiment. First, I quantitatively evaluate the tendency of proteins to sorb to ceramic matrices by using total organic carbon analysis and spectrophotometric assays to analyze samples of experimentally cooked ceramic. I then test a series of solvent and physical parameters in order to develop an optimized method for extracting and preparing protein residues for identification via mass spectrometry. Results demonstrate that protein strongly sorbs to ceramic and is not easily removed, despite repeated washing, unless an appropriate extraction strategy is used. This has implications for the future of paleodietary, conservation ecology and forensic research in that it suggests the potential for recovery of aged or even ancient proteins from ceramic matrices.

Neighborhoods are organic entities that are in a state of constant change and are driven by the specific context of the problem being investigated. The subsequent lack of consensus on a universal geographic definition for what constitutes a neighborhood can lead to biased interpretations of relationships between human activities and place. Further, while existing geographical information system software allows users to combine a range of geographic objects to generate regional units of analyses, their design does not explicitly assess how changing patterns, such as populations, impact the data expressed within them. This research develops an exploratory geographical information system framework that allows users to dynamically delineate neighborhoods based on user-specified characteristics. These include socioeconomic and similar measurements of neighborhood classification from information obtained from secondary data sources, including parcel data, land use/land cover information, and attribute data provided by the United States Postal Service. The proposed methodology creates custom geographies from readily available tract data obtained from various federal and state data repositories to produce indices. By allowing the user to dynamically weigh the combinations of variables used to define their neighborhood, this thesis introduces a solution to a common analytical problem in the discipline.

Comprehensive emergency management and response is crucial for disaster prevention and health emergencies. However, in African countries with an abundance of natural disasters and a rising surge in cardiovascular and obstetric emergencies, little research exists on emergency response. This study examines the fire emergency response in Kumasi Metropolitan Assembly (KMA), Ghana's second largest city. We use Geographic Information Systems (GIS) tools including location -allocation modeling to evaluate the existing system of fire facilities, identify gaps in service, and suggest locations for new fire stations to maximize population coverage. Our results show that fire stations within KMA are poorly distributed and large portions of the metropolis are underserved, a situation that is partly responsible for the huge losses of lives and property during fire outbreaks.

Wildlife tracking is an essential task to gain better understanding of the migration pattern and use of space of the wildlife. Advances in computer technology and global positioning systems (GPS) have lowered costs, reduced processing time, and improved accuracy for tracking wild animals. In this thesis, a wildlife tracking extension is developed for ArcGIS 9.x, which allows biologists and ecologists to effectively track, visualize and analyze the movement patterns of wild animals. The extension has four major components: (1) data import; (2) tracking; (3) spatial and temporal analysis; and (4) data export. Compared with existing software tools for wildlife tracking, the major features of the extension include: (1) wildlife tracking capabilities using a dynamic data layer supported by a file geodatabase with 1 TB storage limit; (2) spatial clustering of wildlife locations; (3) lacunarity analysis of one-dimensional individual animal trajectories and two-dimensional animal locations for better understanding of animal movement patterns; and (4) herds evolvement modeling and graphic representation. The application of the extension is demonstrated using simulated data, test data collected by a GPS collar, and a real dataset collected by ARGOS satellite telemetry for albatrosses in the Pacific Ocean.

The archaeology of the Northern Rio Grande region of New Mexico has recently received an increased amount scholarly attention. In particular, understanding past trends in demographics, agricultural productivity, violence, and social networks have been primary goals of archaeological research. Understanding patterns in animal exploitation has, however, received far less attention due to a small yet growing regional zooarchaeological database. Through the identification of animal remains from a site called Ponsipa (occupied ca. A.D. 1300 to 1600), this thesis adds one large dataset to this growing database. In addition, this thesis expands on the pre-impoundment distribution of an endangered native freshwater fish species in the state of New Mexico called the blue sucker (Cycleptus elongatus). The blue sucker is a unique fish that is currently experiencing range reduction across all of its known North American distribution due to anthropogenic habitat fragmentation and degradation. Skeletal remains that were identified from Ponsipa represent the farthest known northern record of its occurrence in the state of New Mexico and highlight the extent of range restriction of the species in the area. The data concerning the historical biogeography of the blue sucker from Ponsipa have implications for the effective conservation and restoration of blue sucker …

In Ghana, spatial patterns of TB vary for different regions and variations may occur within the same region. This study examines TB distribution in the Greater Accra Region of Ghana using Geographic Information Systems (GIS). Behavioral, cultural and economic variables associated with TB morbidity are examined. From January 1998 to June 1999, data obtained from the Ghana Ministry of Health revealed that, men had a higher TB rate than women, TB was common among the age groups 20-29 and 30-39, and the average TB rate of 67.7 per 100, 000 population in the Greater Accra Region was higher than the national average (58.6 per 100,000 population). Using the human ecology model, this study attempts to explain the spatial distribution of the disease.

Throughout its current range, the Cross Timbers forest ecosystem is vulnerable to land-use change. In this study, we examined the surrounding land use matrix on the vegetation structure, composition and regeneration of six Cross Timbers forest fragments in Denton County, Texas (north of the Dallas-Fort Worth metroplex). Two fragments adjacent to agricultural land, two to residential neighborhoods, and two formally protected forest sites were selected. In summer 2015, five 100 m2 plots were randomly established in each fragment at least 200 meters from the edge. In each plot, all live and dead trees ≥ 3 cm diameter were identified and their height and diameter at breast height (DBH at 1.3 m aboveground) measured. Evidence of dumping (presence of trash) was recorded as an index of human frequentation. Differences in vegetation structure among the forest fragments were found. Most notably, fragments adjacent to agriculture contained 25% to 50% fewer trees per hectare than all other sites (Kruskal-Wallis, p < 0.02), especially trees <10 cm DBH. However, residential fragments had fewer trees that were ≥15 cm DBH compared to the other fragments, indicating that these are the youngest of the forest patches surveyed. Trash was observed in 60% of plots surveyed at …

Maternal mortality is the leading cause of death among women in Nigeria, especially women aged between 15 and 19 years. This research examines the geography of maternal mortality in Nigeria and the role of cultural and religious practices, socio-economic inequalities, urbanization, access to pre and postnatal care in explaining the spatial pattern. State-level data on maternal mortality rates and predictor variables are presented. Access to healthcare, place of residence and religion explains over 74 percent of the spatial pattern of maternal mortality in Nigeria, especially in the predominantly Muslim region of northern Nigeria where poverty, early marriage and childbirth are at its highest, making them a more vulnerable population. Targeting vulnerable populations in policy-making procedures may be an important strategy for reducing maternal mortality, which would also be more successful if other socio-economic issues such as poverty, religious and health care issues are promptly addressed as well.

Rainfall interception is one mechanism by which tree canopies can reduce surface runoff in urban areas. The objectives of this research were to: 1) quantify rainfall interception by urban tree canopies, and 2) determine the influence of vegetation and microenvironmental factors on rainfall interception rates. In the city of Denton, Texas, 30 mature post oak (Quercus stellata) and blackjack oak (Quercus marilandica) trees were selected for study. Trees were assigned to one of three categories: clusters of trees on greenspace (CG), isolated trees on greenspace (IG), and isolated trees surrounded by pavement (IP). Throughfall (the volume of water that travels through the canopy and reaches the soil surface) collectors were placed beneath these trees and rainfall collectors were placed in nearby open areas. Throughfall and rainfall were collected daily from 19 March to 4 July. Interception was calculated as the difference between throughfall and gross rainfall. Over the study period, there were 27 days with measurable rainfall; daily rainfall ranged from 1-51 mm. Over the sampling period, rainfall interception for individual trees ranged from -10% to 49%, indicating high spatial variability in interception. Percent interception was highest for the CG treatment (22.7 ± 3.8 SE), intermediate for IG (27.4 ± …

This study uses the predictive modeling program Sea-Levels Affecting Marshes Model (SLAMM) to evaluate sea-level rise hazards, such as erosion and inundation, on coastal archaeological sites with a vertical rise of sea level of .98 meters from 2006 to 2100. In total 177 archaeological site locations were collected and georeferenced over GIS outputs maps of wetlands, erosion presence, surface elevation, and accretion. Wetlands data can provide useful information about characteristics of the wetland classes, which make a difference in the ability for coastal archaeological sites to combat sea level rise. Additionally, the study evaluated predicted erosion of archaeological sites by presence or absence of active erosion on a cell-by-cell basis. Elevation map outputs relative to mean tide level allowed for a calculation of individual archaeological site datums to use NOAA tidal databases to identify the potential for their inundation. Accretion maps acquired from the SLAMM run determined the potential for the archaeological site locations to combat rising sea levels and potentially provide protection from wave effects. Results show that the most significant hazard predicted to affect coastal archaeological sites is inundation. Approximately 54% of the total archaeological sites are predicted to be inundated at least half the time by 2100. …

The objective of this study was to deploy a conceptual framework developed by M. Forbes using a geographic information system (GIS) approach to assess the functionality of wetlands in the Galveston Bay Area of Texas. This study utilized geospatial datasets which included National Wetland Inventory maps (NWI), LiDAR data, National Agriculture Imagery Program (NAIP) imagery and USGS National Land Cover data to assess the capacity of wetlands to store surface water and remove pollutants, including nitrogen, phosphorus, heavy metals, and organic compounds. The use of LiDAR to characterize the hydrogeomorphic characteristics of wetlands is a key contribution of this study to the science of wetland functional assessment. LiDAR data was used to estimate volumes for the 7,370 wetlands and delineate catchments for over 4,000 wetlands, located outside the 100-yr floodplain, within a 2,075 square mile area around Galveston Bay. Results from this study suggest that coastal prairie freshwater wetlands typically have a moderate capacity to store surface water from precipitation events, remove ammonium, and retain phosphorus and heavy metals and tend to have a high capacity for removing nitrate and retainremove organic compounds. The results serve as a valuable survey instrument for increasing the understanding of coastal prairie freshwater wetlands …

Buruli ulcer (BU), an infectious disease caused by Mycobacterium ulcerans, is the third most common mycobacterial disease after leprosy and tuberculosis and a WHO-defined neglected tropical disease. Despite years of research, the mode of transmission of BU remains unknown. This master’s thesis provides an integrated spatial analysis of disease dynamics in Ghana, West Africa, an area of comparatively high BU incidence. Within a case/matched control study design, environmental factors associated with BU infection and spatial behaviors are investigated to uncover possible links between individual daily activity spaces and terrains of risk across disturbed landscapes. This research relies upon archival and field-collected data and analyses conducted with geographical information systems (GIS).

Tree diameter data from 29 years of observations in six permanent plots was used to calculate the growth rate parameter of the FACET gap model for 39 species in the Imataca forests in Venezuela. The compound topographic index was used as a measure of differential soil water conditions and was calculated using geographic information systems. Growth rate values and topographic conditions typical of hill and valley were input to FACET to simulate dynamics at the species level and by ecological and functional groups. Species shade-tolerance led to expected successional patterns. Drought-tolerant/saturation-intolerant species grew in the hills whereas drought-intolerant/saturation-tolerant species occurred in the valleys. The results help to understand forest composition in the future and provide guidance to forest management practices.

Phytophthora ramorum, an exotic forest pathogen known as ‘sudden oak death’ (SOD), has received considerable attention in recent years because of its effects on vegetation structure, composition, and fire disturbance regimes in western U.S. coastal forests. This research examines differences in the importance (e.g., density, dominance, and frequency) and distribution of five host species of P. ramorum–– Umbellularia californica (California bay laurel), Quercus agrifolia (coast live oak), Pseudotsuga menziesii (Douglas fir), Sequoia sempervirens (Coast redwood), and Arbutus menziesii (Madrone)––in Soquel, California. A stratified random sampling design was used to select 66 plots surrounding a managed forest edge in Soquel Demonstration State Forest. Vegetation measurements were conducted in summer 2013. In each plot, all trees ≥3 cm diameter at breast height (DBH) were identified to species, counted, and DBH, height, and canopy position measured. Leaf area index (LAI) of bay laurel was measured to quantify the amount of leaves available for pathogen dispersal with a LiCOR 2200 Plant Canopy Analyzer. In addition, morning (9:00 am) and afternoon (1:00 pm) photosynthetically active radiation (PAR) were quantified using a quantum light sensor. This paper examines the influence of environmental variables, including distance to edge, aspect, slope, and light availability on host species spatial …

The Red River Cache is an assemblage of 33 bifaces, found in Cooke County, along Cache Creek, a tributary to the Red River. Also found with the cache was a hearth which yielded charcoal for AMS dating which returned an age of 2770- 2710 Cal YBP placing the cache in the Late Archaic. The geologic investigation of Cache Creek established 3 Holocene allostratigraphic units that provide information depositional environments adjacent to the Red River. Lithic analysis explored the production of bifaces during the Late Archaic and compared the cache to regional records. Using both geologic and lithic analysis this thesis investigates the temporal and cultural context of the cache using a geoarchaeological approach.

Ethnic and religious conflict, and the deepening of capitalism have led to global diaspora at unprecedented levels. The United Nations High Commissioner for Refugees reported that as of 2015, 1 in every 122 persons worldwide were either a refugee, internally displaced, or seeking asylum. The U.S. currently admits the largest number of refugees worldwide. However, policies fail to reflect the multitude of elements that constitute successful resettlement. Moreover, many refugees come from farming backgrounds and are forced to migrate to a landless urban environment, where their skill sets may not be utilized and farm land is not available. I argue that existing resettlement processes are embedded in logics and practices that alienate humans from nature and from each other through competition, isolation, and placeless environments. Through an exploration in concepts of urban agriculture, place-making, identity, and otherness, and illuminating the experiences of resettled refugees involved in a community gardening project in Fort Worth, Texas, show how the urban refugee garden provides the individual a space to narrate an identity, and to resist industrial agriculture and labor outside their industry. Exploring best practices in resettlement should be a priority to governments, politicians, and communities involved in the process and highlight the …

Data on rates of atmospheric deposition is limited in many montane ecosystems, where high spatial variability in meteorological, topographic, and vegetation factors contributes to elevated atmospheric inputs and to the creation of deposition hotspots. Addressing the ecological consequences of increasing deposition in these areas will require a better understanding of surface controls influencing atmospheric deposition rates at both large and small-scales. The overarching objective of this thesis research was to understand the influence of vegetation structure and canopy exposure on small-scale patterns of atmospheric sulfate, nitrate, and chloride deposition inputs to a conifer forest in the Santa Cruz Mountains, California. Throughfall ion fluxes (i.e., ions delivered in water that pass from the forest canopy to the forest floor), bulk deposition (i.e., primarily wet deposition), and rainfall data were collected during the rainy period from October 2012 to May 2013. Throughfall SO42-, Cl-, and NO3- fluxes were measured beneath eight clusters of Douglas fir (Pseudotsuga menziesii) trees (three trees per cluster) differing in tree size (i.e., diameter at breast height; DBH) and canopy exposure. In each cluster, a throughfall collector was placed 1-meter from the bole of an individual tree, for a total of 24 individual collectors. The position of each …

Storm water sediment runoff from disturbed landscapes has the potential to impair aquatic environments. Small construction sites of 1-5 acres in the United States are currently regulated by the United States Environmental Protection Agency to minimize storm water runoff damages to the environment. Gas well construction sites are similar to other construction sites in how the landscape is altered, but are not similarly regulated. This study identified sediment runoff from gas well development sites by collecting it in traps and weirs, and by measuring sediment debris lobes. Sediment primarily consisted of silt and clay sized particles. Sediments from two gas well sites formed five debris lobes that ranged in size from 325 to 3,290 square feet. Sediment loadings estimated from the debris lobes averaged 57.1 tons per year/acre. Future studies should focus on further quantification of sediment movement off of gas well sites and identify effective erosion control methods.

More Texans are living with HIV infection than ever before. in fact, there has been a 6% increase annually, since 2002. This trend is not a result of increased HIV/AIDS incidence, but rather improving life expectancy of those living with HIV. Due to significant advances in HIV/AIDS testing, prevention, and treatment, individuals with HIV are living longer than ever before. However, throughout the state, the life expectancy of a person infected with HIV/AIDS varies spatially. This study investigates and attempts to explain the spatial distribution of HIV/AIDS survival rates by examining neighborhood socioeconomic characteristics. the results suggest that, contrary to expectation, the lowest survival rates occur, not in extreme poverty areas, but rather in moderate SES areas. Too rich to qualify for free treatments, but not rich enough to afford purchasing such treatments, the middle income living with HIV infection are caught between the cracks. the results provide important input for targeting public health interventions to improve HIV/AIDS survival.

This study utilized GIS and statistical methods to map the spatial variability of nitrate and related groundwater constituents in 30 counties above the Seymour Aquifer, analyze temporal patterns of nitrate pollution, identify probable sources of pollution, and recommend water development strategies to minimize exposure to nitrate and reduce future aquifer contamination. Nitrate concentrations in excess of 44 mg/L (US EPA limit) were commonly observed in the Seymour Aquifer region, especially in the central agricultural belt. Data indicated that this is an ongoing problem in the Seymour Aquifer and that agricultural activity and rural septic systems are the likely sources of the nitrate. Inconclusive results emphasized the need for a more comprehensive spatial and temporal water quality monitoring.

This study uses the storm surge sediment beds deposited by Hurricanes Audrey (1957), Carla (1961), Rita (2005) and Ike (2008) to investigate spatial and temporal changes in sedimentation rates on the McFaddin National Wildlife Refuge in Southeast Texas. Fourteen sediment cores were collected along a transect extending from 90 to 1230 meters inland from the Gulf Coast. Storm-surge-deposited sediment beds were identified by texture, organic content, carbonate content, the presence of marine microfossils, and Cesium-137 dating. The hurricane-derived sediment beds are marker horizons that facilitate assessment of marsh sedimentation rates from nearshore to inland locations as well as over decadal to annual timescales. Near the shore, on a Hurricane Ike washover fan, where hurricane-derived sedimentation has increased elevation by up to 0.68 m since 2005, there was no measurable marsh sedimentation in the period 2008-2014. Farther inland, at lower elevations, sedimentation for the period 2008-2014 averaged 0.36 cm per year. The reduction in sedimentation in the period 2008-2014 on the nearshore part of the marsh is likely due to reduced flooding in response to increased elevation from hurricane storm surge sediment deposition. These results provide valuable knowledge about the sedimentary response of coastal marshes subject to storm surge deposition and …

In 1991, India adopted neoliberalism, a system of political economic practices that promotes private property and free trade, as its political and economic system to promote development in their country. India's neoliberal reform has created issues surrounding human development, resource accumulation, and power struggles. Eleven years later, in 2002, Bt cotton was introduced to the Indian agricultural sector. This research examines how the genetically modified organism Bt cotton is being used to commodify nature in the context of agriculture under neoliberalism. The research focuses on the dispossession of the rural farmers through the commodification of agriculture using Bt cotton. Dispossession of the rural farmers happen through the implications that arise from the commodification of nature. Through Marxist theory of primitive accumulation, this research analyzes accumulation by dispossession and how it neglects the working class and its struggle in rural India. Through this examination, the research will argue alternatives to the dispossession of the working class and the commodification of nature through Bt cotton. Dispossession, in this research, is examined both through working class, but also through the dispossession of biodiversity. Through the loss of biodiversity, the rural farmers are becoming dispossessed from a more sustainable environment. Along with these goals, …

This thesis introduces a new lacunarity analysis add-in for ArcGIS.

Ghana is identified among the developing countries with high maternal mortality ratio in Africa. This study unpacked the Demographic and Health Survey data by examining the maternal health indicators at the district level using GIS methods. Understanding the geographic patterns of antenatal care, place of delivery, and skilled birth attendants at the small scale will help to formulate and plan for location-specific health interventions that can improve maternal health care behavior among Ghanaian women. Districts with high rates and low rates were identified. Place of residence, Gini-Coefficient, wealth status, internet access, and religious affiliation were used to explore the underlying factors associated with the observed patterns. Economic inequality was positively associated with increased use of maternal health care services. The ongoing free maternal health policy serves as a cushion effect for the economic inequality among the districts in the Northern areas. Home delivery is common among the rural districts and is more prominent mostly in the western part of Northern Region and southwest of Upper West. Educating women about the free maternal health policy remains the most viable strategy for positive maternal health outcomes and in reducing MMR in Ghana.