Several proteins involved in the response to DNA doublestrand breaks (DSB) f orm microscopically visible nuclear domains, orfoci, after exposure to ionizing radiation. Radiation-induced foci (RIF)are believed to be located where DNA damage occurs. To test thisassumption, we analyzed the spatial distribution of 53BP1, phosphorylatedATM, and gammaH2AX RIF in cells irradiated with high linear energytransfer (LET) radiation and low LET. Since energy is randomly depositedalong high-LET particle paths, RIF along these paths should also berandomly distributed. The probability to induce DSB can be derived fromDNA fragment data measured experimentally by pulsed-field gelelectrophoresis. We used this probability in Monte Carlo simulations topredict DSB locations in synthetic nuclei geometrically described by acomplete set of human chromosomes, taking into account microscope opticsfrom real experiments. As expected, simulations produced DNA-weightedrandom (Poisson) distributions. In contrast, the distributions of RIFobtained as early as 5 min after exposure to high LET (1 GeV/amu Fe) werenon-random. This deviation from the expected DNA-weighted random patterncan be further characterized by "relative DNA image measurements." Thisnovel imaging approach shows that RIF were located preferentially at theinterface between high and low DNA density regions, and were morefrequent than predicted in regions with lower DNA density. The samepreferential nuclear location was also measured …

The National Ignition Facility (NIF) and Laser Mega Joule (LMJ) facilities are currently under construction in the United States and France. Ignited targets at these facilities are anticipated to produce up to 1019 deuterium-tritium fusion neutrons. This will provide unprecedented opportunities and challenges for the use of nuclear diagnostics in inertial confinement fusion experiments. The NIF and LMJ nuclear diagnostics will work in a harsh radiation environment that includes neutron, hard x-ray, and gamma backgrounds, neutron induced signals in coaxial cables, and electromagnetic pulse (EMP) generated signals. Recent results of different background measurements on OMEGA laser facility will be reported. Based on these results, specific design concepts have been identified to mitigate much of the radiation and EMP-induced backgrounds. An overview of the background mitigation techniques in the NIF nuclear diagnostics conceptual designs will be presented.

Background: Most bacterial genes were acquired by horizontalgene transfer from other bacteria instead of being inherited bycontinuous vertical descent from an ancient ancestor}. To understand howthe regulation of these {acquired} genes evolved, we examined theevolutionary histories of transcription factors and of regulatoryinteractions from the model bacterium Escherichia coli K12. Results:Although most transcription factors have paralogs, these usually arose byhorizontal gene transfer rather than by duplication within the E. colilineage, as previously believed. In general, most neighbor regulators --regulators that are adjacent to genes that they regulate -- were acquiredby horizontal gene transfer, while most global regulators evolvedvertically within the gamma-Proteobacteria. Neighbor regulators wereoften acquired together with the adjacent operon that they regulate, sothe proximity might be maintained by repeated transfers (like "selfishoperons"). Many of the as-yet-uncharacterized (putative) regulators havealso been acquired together with adjacent genes, so we predict that theseare neighbor regulators as well. When we analyzed the histories ofregulatory interactions, we found that the evolution of regulation byduplication was rare, and surprisingly, many of the regulatoryinteractions that are shared between paralogs result from convergentevolution. Another surprise was that horizontally transferred genes aremore likely than other genes to be regulated by multiple regulators, andmost of this complex regulation probably evolved …

The relationship between charge transport and mechanical properties of alkanethiol self-assembled monolayers (SAM) on Au(111) films has been investigated using an atomic force microscope with a conductive tip. Molecular tilts induced by the pressure applied by the tip cause stepwise increases in film conductivity. A decay constant {beta} = 0.57 {+-} 0.03 {angstrom}{sup -1} was found for the current passing through the film as a function of tip-substrate separation due to this molecular tilt. This is significantly smaller than the value of {approx} 1 {angstrom}{sup -1} found when the separation is changed by changing the length of the alkanethiol molecules. Calculations indicate that for isolated dithiol molecules S-bonded to hollow sites, the junction conductance does not vary significantly as a function of molecular tilt. The impact of S-Au bonding on SAM conductance is discussed.

Bruce Merrifield, trained as a biochemist, had to address three major challenges related to the development and acceptance of solid-phase peptide synthesis (SPPS). The challenges were (1) to reduce the concept of peptide synthesis on a insoluble support to practice, (2) overcome the resistance of synthetic chemists to this novel approach, and (3) establish that a biochemist had the scientific credentials to effect the proposed revolutionary change in chemical synthesis. How these challenges were met is discussed in this article.

We report results on the performance of a free-electron laser operating at a wavelength of 13.7 nm where unprecedented peak and average powers for a coherent extreme-ultraviolet radiation source have been measured. In the saturation regime, the peak energy approached 170 {micro}J for individual pulses, and the average energy per pulse reached 70 {micro}J. The pulse duration was in the region of 10 fs, and peak powers of 10 GW were achieved. At a pulse repetition frequency of 700 pulses per second, the average extreme-ultraviolet power reached 20mW. The output beam also contained a significant contribution from odd harmonics of approximately 0.6% and 0.03% for the 3rd (4.6 nm) and the 5th (2.75 nm) harmonics, respectively. At 2.75 nm the 5th harmonic of the radiation reaches deep into the water window, a wavelength range that is crucially important for the investigation of biological samples.

The charge state and local ordering of Mn doped into a pulsed laser deposited single-phase thin film of ZnO are investigated by using X-ray absorption spectroscopy at the O K-, Mn K- and L-edges, and X-ray emission spectroscopy at the O K- and Mn L-edge. This film is found to be ferromagnetic at room temperature. EXAFS measurement shows that Mn{sup 2+} replaces Zn site in tetrahedral symmetry, and there is no evidence for either metallic Mn or MnO in the film. Upon Mn doping, the top of O 2p valence band extends into the bandgap indicating additional charge carries being created.

Groundwater is sampled from 39 monitoring wells on the Nevada Test Site (NTS) as part of the Routine Radiological Environmental Monitoring Program. Many of these wells were not designed or constructed for long-term groundwater monitoring. Some have extensive completion zones and others have obstructions such as pumps and tubing. The high-volume submersible pumps in some wells are unsuitable for long-term monitoring and result in large volumes of water that may have to be contained and characterized before subsequent disposition. The configuration of most wells requires sampling stagnant well water with a wireline bailer. Although bailer sampling allows for the collection of depth-discrete samples, the collected samples may not be representative of local groundwater because no well purging is done. Low-maintenance, solar-powered jack pumps will be deployed in nine of these onsite monitoring wells to improve sample quality. These pumps provide the lift capacity to produce groundwater from the deep aquifers encountered in the arid environment of the NTS. The water depths in these wells range from 700 to 2,340 ft below ground surface. The considerable labor and electrical power requirements of electric submersible pumps are eliminated once these pumps are installed. Access tubing will be installed concurrent with the installation …

Compositional data are represented as vector variables with individual vector components ranging between zero and a positive maximum value representing a constant sum constraint, usually unity (or 100 percent). The earth sciences are flooded with spatial distributions of compositional data, such as concentrations of major ion constituents in natural waters (e.g. mole, mass, or volume fractions), mineral percentages, ore grades, or proportions of mutually exclusive categories (e.g. a water-oil-rock system). While geostatistical techniques have become popular in earth science applications since the 1970s, very little attention has been paid to the unique mathematical properties of geostatistical formulations involving compositional variables. The book 'Geostatistical Analysis of Compositional Data' by Vera Pawlowsky-Glahn and Ricardo Olea (Oxford University Press, 2004), unlike any previous book on geostatistics, directly confronts the mathematical difficulties inherent to applying geostatistics to compositional variables. The book righteously justifies itself with prodigious referencing to previous work addressing nonsensical ranges of estimated values and error, spurious correlation, and singular cross-covariance matrices.

A 0.1 A, 4.3 MeV DC electron beam is routinely used to cool 8 GeV antiprotons in Fermilab's Recycler storage ring [1]. The primary function of the electron cooler is to increase the longitudinal phase-space density of the antiprotons for storing and preparing high-density bunches for injection into the Tevatron. The longitudinal cooling rate is found to significantly depend on the transverse emittance of the antiproton beam. The paper presents the measured rates and compares them with calculations based on drag force data.

Currently there are three platforms that offer quasi-isentropic compression or ramp-wave compression (RWC): light-gas gun, magnetic flux (Z-pinch), and laser. We focus here on the light-gas gun technique and on some current theoretical insights from experimental data. A gradient impedance through the length of the impactor provides the pressure pulse upon impactor to the subject material. Applications and results are given concerning high-pressure strength and liquid to solid, phase transition of water plus its associated phase fraction history. We also introduce the Korteweg-deVries-Burgers equation as a means to understand the evolution these RWC waves that propagate through the thickness of the subject material. This equation has the necessary competition between non-linear, dispersion, and dissipation processes, which is shown through observed structures that are manifested in the experimental particle velocity histories. Such methodology points towards a possible quantifiable dissipation, through which RWC experiments may be analyzed.

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The direct assay of filter media by gamma spectrometry following DEOX testing has distinct advantages over analytical chemistry. Prior to using gamma spectrometry for the quantification of cesium (Cs-137), a calibration must be established with known sources since gamma spectrometry yields relative results. Quantitative analytical chemistry, in particular ICP-MS, has been performed on the filter media for comparison to the gamma spectrometry data. The correlation of gamma spectrometry to ICP-MS data is presented to justify the continued use of gamma spectrometry for filter media.

Theoretical and computational investigations are presented of boundary plasma microturbulence that take into account important effects of the geometry of diverted tokamaks--in particular, the effect of x-point magnetic shear and the termination of field lines on divertor plates. We first generalize our previous 'heuristic boundary condition' which describes, in a lumped model, the closure of currents in the vicinity of the x-point region to encompass three current-closure mechanisms. We then use this boundary condition to derive the dispersion relation for low-beta flute-like modes in the divertor-leg region under the combined drives of curvature, sheath impedance, and divertor tilt effects. The results indicate the possibility of strongly growing instabilities, driven by sheath boundary conditions, and localized in either the private or common flux region of the divertor leg depending on the radial tilt of divertor plates. We re-visit the issue of x-point effects on blobs, examining the transition from blobs terminated by x-point shear to blobs that extend over both the main SOL and divertor legs. We find that, for a main-SOL blob, this transition occurs without a free-acceleration period as previously thought, with x-point termination conditions applying until the blob has expanded to reach the divertor plate. We also derive …

In this paper we describe the capabilities of the MINERvA experiment for the measurement of neutrino-nucleus coherent scattering.

Hydrologic analyses are commonly based on a single conceptual-mathematical model. Yet hydrologic environments are open and complex, rendering them prone to multiple interpretations and mathematical descriptions. Considering conceptual model uncertainty is a critical process in hydrologic uncertainty assessment. This study assesses recharge and geologic model uncertainty for the Climax mine area of the Nevada Test Site, Nevada. Five alternative recharge models have been independently developed for Nevada and the Death Valley area of California. These models are (1) the Maxey-Eakin model, (2 and 3) a distributed parameter watershed model with and without a runon-runoff component, and (4 and 5) a chloride mass-balance model with two zero-recharge masks, one for alluvium and one for both alluvium and elevation. Similarly, five geological models have been developed based on different interpretations of available geologic information. One of them was developed by the U.S. Geological Survey for the Death Valley Regional Flow System (DVRFS) model; the other four were developed by Bechtel Nevada for the Yucca Flat Corrective Action Unit (CAU). The Climax mine area is in the northern part of the Yucca Flat CAU, which is within the DVRFS. A total of 25 conceptual models are thus formulated based on the five recharge …

In the continuous effort to improve antiproton stacking rate, a new type of equalizers has been developed and installed in antiproton accumulator. The R&D of these new equalizers is described in this paper. Equalizers are used in Fermilab antiproton stochastic cooling to compensate frequency response of the cooling system. Usually both amplitude and phase compensations are needed. However in most cases it is difficult to achieve a satisfactory compensation for both because of their interdependence. To make it more difficult is that in some cases large compensations (10 to 20 db of amplitude compensation or more than 100 degree of phase compensation) are needed near the low or high ends of a frequency band. Recently a new compensation scheme of equalizers is proposed for Fermilab antiproton accumulator. This scheme originated from the requirement to maximize the system performance resulting in a request for the phase of the cooling system transfer function to be extremely flat. For this kind of phase correction, a new type of equalizers has been developed.

Diseases and conditions affecting the lower urinary tract are a leading cause of dysfunctional sexual health, incontinence, infection, and kidney failure. The growth, differentiation, and repair of the bladder's epithelial lining are regulated, in part, by fibroblast growth factor (FGF)-7 and -10 via a paracrine cascade originating in the mesenchyme (lamina propria) and targeting the receptor for FGF-7 and -10 within the transitional epithelium (urothelium). The FGF-7 gene is located at the 15q15-q21.1 locus on chromosome 15 and four exons generate a 3.852-kb mRNA. Five duplicated FGF-7 gene sequences that localized to chromosome 9 were predicted not to generate functional protein products, thus validating the use of FGF-7-null mice as an experimental model. Recombinant FGF-7 and -10 induced proliferation of human urothelial cells in vitro and transitional epithelium of wild-type and FGF-7-null mice in vivo.To determine the extent that induction of urothelial cell proliferation during the bladder response to injury is dependent on FGF-7, an animal model of partial bladder outlet obstruction was developed. Unbiased stereology was used to measure the percentage of proliferating urothelial cells between obstructed groups of wild-type and FGF-7-null mice. The stereological analysis indicated that a statistical significant difference did not exist between the two groups, …

The influence of epitaxial strain, in the form of tetragonal distortions, on the magnetic and magnetotransport properties of La{sub 0.67}Sr{sub 0.33}MnO{sub 3} thin films was studied. The tetragonal distortion (c/a ratio) was modulated through the choice of the substrate, ranging from c/a=1.007 on (001)-oriented (LaAlO{sub 3}){sub 0.3}(Sr{sub 2}AlTaO{sub 6}){sub 0.7} substrates to 0.952 on (110)-oriented GdScO{sub 3} substrates. In agreement with previous theoretical predictions, these large values of tensile strain cause the Curie temperature and the saturation magnetization to decrease, alter the temperature dependence of the resistivity and magnetoresistance, and increase the resistivity several orders of magnitude.

A summary of the latest results of Standard Model Higgs boson searches from CDF and D0 presented at the DIS 2007 conference is reported in this paper. All analyses presented use 1 fb{sup -1} of Tevatron data. The strategy of the different analyses is determined by the Higgs production mechanism and decay channel.

More than fifteen years after the launch of programs in theU.K. and U.S., industry still offers one of the largest opportunities forenergy savings worldwide. The International Energy Agency (IEA) estimatesthe savings potential from cost-optimization of industrial motor-drivensystems alone at 7 percent of global electricity use. The U.S. Departmentof Energy (USDOE) Industrial Technologies Program estimates 7 percentsavings potential in total US industrial energy use through theapplication of proven best practice. Simple paybacks for these types ofprojects are frequently two years or less. The technology required toachieve these savings is widely available; the technical skills requiredto identify energy saving opportunities are known and transferable.Although programs like USDOE's Best Practices have been highlysuccessful, most plants, as supported by 2002 MECS data, remain eitherunaware or unmotivated to improve their energy efficiency--as evidencedby the 98 percent of US industrial facilities reporting to MECS say thatthey lack a full-time energy manager. With the renewed interest in energyefficiency worldwide and the emergence of carbon trading and newfinancial instruments such as white certificates1, there is a need tointroduce greater transparency into the way that industrial facilitiesidentify, develop, and document energy efficiency projects. Historically,industrial energy efficiency projects have been developed by plantengineers, frequently with assistance from consultants and/or supplierswith …

Extraction of dilute metal ions from water was performed near room temperature with a variety of ionic liquids. Distribution coefficients are reported for fourteen metal ions extracted with ionic liquids containing cations 1-octyl-4-methylpyridinium [4MOPYR]{sup +}, 1-methyl-1-octylpyrrolidinium [MOPYRRO]{sup +} or 1-methyl-1-octylpiperidinium [MOPIP]{sup +}, and anions tetrafluoroborate [BF{sub 4}]{sup +}, trifluoromethyl sulfonate [TfO]{sup +} or nonafluorobutyl sulfonate [NfO]{sup +}. Ionic liquids containing octylpyridinium cations are very good for extracting mercury ions. However, other metal ions were not significantly extracted by any of these ionic liquids. Extractions were also performed with four new task-specific ionic liquids. Such liquids containing a disulfide functional group are efficient and selective for mercury and copper, whereas those containing a nitrile functional group are efficient and selective for silver and palladium.

A series of 1-m long Nb{sub 3}Sn dipole models has been built at Fermilab in an attempt to refine the wind-and-react technology for Nb3Sn accelerator magnets. Three models made with Powder-in-Tube Nb{sub 3}Sn strand reached their design field of 10 T demonstrating a good reproducibility of magnet quench performance and field quality. Recently a new dipole 'mirror' model based on Nb{sub 3}Sn coil made of improved Restack Rod Process strand was constructed and tested reaching the maximum field above 11 T. This paper describes the parameters of the RRP strand and cable used as well as the design, fabrication and test results of this magnet.

We used the Near Infrared Camera (NIRC) on Keck I to obtain K{sub s}-band images of four candidate high-redshift radio galaxies selected using optical and radio data in the NOAO Deep Wide-Field Survey in Bootes. Our targets have 1.4 GHz radio flux densities greater than 1 mJy, but are undetected in the optical. Spectral energy distribution fitting suggests that three of these objects are at z > 3, with radio luminosities near the FR-I/FR-II break. The other has photometric redshift z{sub phot} = 1.2, but may in fact be at higher redshift. Two of the four objects exhibit diffuse morphologies in K{sub s}-band, suggesting that they are still in the process of forming.