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The Exosporium of B.cereus Contains a Binding Site for gC1qR/p33: Implication in Spore Attachment and/or Entry (open access)

The Exosporium of B.cereus Contains a Binding Site for gC1qR/p33: Implication in Spore Attachment and/or Entry

B. cereus, is a member of a genus of aerobic, gram-positive, spore-forming rod-like bacilli, which includes the deadly, B. anthracis. Preliminary experiments have shown that gC1qR binds to B.cereus spores that have been attached to microtiter plates. The present studies were therefore undertaken, to examine if cell surface gC1qR plays a role in B.cereus spore attachment and/or entry. Monolayers of human colon carcinoma (Caco-2) and lung cells were grown to confluency on 6 mm coverslips in shell vials with gentle swirling in a shaker incubator. Then, 2 {micro}l of a suspension of strain SB460 B.cereus spores (3x10{sup 8}/ml, in sterile water), were added and incubated (1-4 h; 36{sup 0} C) in the presence or absence of anti-gC1qR mAb-carbon nanoloops. Examination of these cells by EM revealed that: (1) When B. cereus endospores contacted the apical Caco-2 cell surface, or lung cells, gClqR was simultaneously detectable, indicating upregulation of the molecule. (2) In areas showing spore contact with the cell surface, gClqR expression was often adjacent to the spores in association with microvilli (Caco-2 cells) or cytoskeletal projections (lung cells). (3) Furthermore, the exosporia of the activated and germinating spores were often decorated with mAb-nanoloops. These observations were further corroborated by …
Date: January 1, 2008
Creator: Ghebrehiwet, Berhane; Tantral, Lee; Titmus, Matthew A.; Panessa-Warren, Barbara J.; Tortora, George T.; Wong, Stanislaus S. et al.
System: The UNT Digital Library
Quantitive DNA Fiber Mapping (open access)

Quantitive DNA Fiber Mapping

Several hybridization-based methods used to delineate single copy or repeated DNA sequences in larger genomic intervals take advantage of the increased resolution and sensitivity of free chromatin, i.e., chromatin released from interphase cell nuclei. Quantitative DNA fiber mapping (QDFM) differs from the majority of these methods in that it applies FISH to purified, clonal DNA molecules which have been bound with at least one end to a solid substrate. The DNA molecules are then stretched by the action of a receding meniscus at the water-air interface resulting in DNA molecules stretched homogeneously to about 2.3 kb/{micro}m. When non-isotopically, multicolor-labeled probes are hybridized to these stretched DNA fibers, their respective binding sites are visualized in the fluorescence microscope, their relative distance can be measured and converted into kilobase pairs (kb). The QDFM technique has found useful applications ranging from the detection and delineation of deletions or overlap between linked clones to the construction of high-resolution physical maps to studies of stalled DNA replication and transcription.
Date: January 28, 2008
Creator: Lu, Chun-Mei; Wang, Mei; Greulich-Bode, Karin M.; Weier, Jingly F. & Weier, Heinz-Ulli G.
System: The UNT Digital Library
EVAPORITE MICROBIAL FILMS, MATS, MICROBIALITES AND STROMATOLITES (open access)

EVAPORITE MICROBIAL FILMS, MATS, MICROBIALITES AND STROMATOLITES

Evaporitic environments are found in a variety of depositional environments as early as the Archean. The depositional settings, microbial community and mineralogical composition vary significantly as no two settings are identical. The common thread linking all of the settings is that evaporation exceeds precipitation resulting in elevated concentrations of cations and anions that are higher than in oceanic systems. The Dead Sea and Storrs Lake are examples of two diverse modern evaporitic settings as the former is below sea level and the latter is a coastal lake on an island in the Caribbean. Each system varies in water chemistry as the Dead Sea dissolved ions originate from surface weathered materials, springs, and aquifers while Storrs Lake dissolved ion concentration is primarily derived from sea water. Consequently some of the ions, i.e., Sr, Ba are found at significantly lower concentrations in Storrs Lake than in the Dead Sea. The origin of the dissolved ions are ultimately responsible for the pH of each system, alkaline versus mildly acidic. Each system exhibits unique biogeochemical properties as the extreme environments select certain microorganisms. Storrs Lake possesses significant biofilms and stromatolitic deposits and the alkalinity varies depending on rainfall and storm activity. The microbial community …
Date: January 28, 2008
Creator: Brigmon, R; Penny Morris, P & Garriet Smith, G
System: The UNT Digital Library
Network Communication as a Service-Oriented Capability (open access)

Network Communication as a Service-Oriented Capability

In widely distributed systems generally, and in science-oriented Grids in particular, software, CPU time, storage, etc., are treated as"services" -- they can be allocated and used with service guarantees that allows them to be integrated into systems that perform complex tasks. Network communication is currently not a service -- it is provided, in general, as a"best effort" capability with no guarantees and only statistical predictability. In order for Grids (and most types of systems with widely distributed components) to be successful in performing the sustained, complex tasks of large-scale science -- e.g., the multi-disciplinary simulation of next generation climate modeling and management and analysis of the petabytes of data that will come from the next generation of scientific instrument (which is very soon for the LHC at CERN) -- networks must provide communication capability that is service-oriented: That is it must be configurable, schedulable, predictable, and reliable. In order to accomplish this, the research and education network community is undertaking a strategy that involves changes in network architecture to support multiple classes of service; development and deployment of service-oriented communication services, and; monitoring and reporting in a form that is directly useful to the application-oriented system so that it may …
Date: January 8, 2008
Creator: Johnston, William; Johnston, William; Metzger, Joe; Collins, Michael; Burrescia, Joseph; Dart, Eli et al.
System: The UNT Digital Library
POPULATION DISTRIBUTION DURING THE DAY (open access)

POPULATION DISTRIBUTION DURING THE DAY

Population distribution during the day can be defined as distribution of population in an area during the daytime hours. However, a precise definition of daytime hours is challenging given the geographic variability in the length of a day or daylight hours. The US Census Bureau used "normal business hours" as the span of time to describe daytime population. Given that Censuses typically estimates residential population, it represents a nighttime population distribution. In that respect, daytime population in an area may be broadly defined as distribution of population at times other than when they are expected to be at their residences at night which extends the duration from business hours to include the evening hours as well.
Date: January 1, 2008
Creator: Bhaduri, Budhendra L.
System: The UNT Digital Library
Population Evacuations (open access)

Population Evacuations

Emergency evacuation is one of the most important protective action alternatives when facing a natural or a man-made disaster. The planning and implementation of a large-scale emergency evacuation is a difficult and complex problem that requires the interactions of many agencies and involves a large amount of information. This article focuses on the latter and discusses the models that are normally used in the planning phase to evaluate this type of protective action alternatives and the information requirements for their implementation. Although many advances have been achieved in this area, especially during the last few years, a considerable amount of work still remains incomplete. Some of the important areas that need attention, such as improvements in the demographic models, integration of traffic simulation and threat evolution models, and real-time information for the deployment phase, are also discussed in this paper.
Date: January 1, 2008
Creator: Franzese, Oscar
System: The UNT Digital Library
Proceedings of the 4th Annual Workshop on Cyber Security and Information Intelligence Research: Developing Strategies To Meet The Cyber Security And Information Intelligence Challenges Ahead (open access)

Proceedings of the 4th Annual Workshop on Cyber Security and Information Intelligence Research: Developing Strategies To Meet The Cyber Security And Information Intelligence Challenges Ahead

As our dependence on the cyber infrastructure grows ever larger, more complex and more distributed, the systems that compose it become more prone to failures and/or exploitation. Intelligence is information valued for its currency and relevance rather than its detail or accuracy. Information explosion describes the pervasive abundance of (public/private) information and the effects of such. Gathering, analyzing, and making use of information constitutes a business- / sociopolitical- / military-intelligence gathering activity and ultimately poses significant advantages and liabilities to the survivability of "our" society. The combination of increased vulnerability, increased stakes and increased threats make cyber security and information intelligence (CSII) one of the most important emerging challenges in the evolution of modern cyberspace "mechanization." The goal of the workshop was to challenge, establish and debate a far-reaching agenda that broadly and comprehensively outlined a strategy for cyber security and information intelligence that is founded on sound principles and technologies. We aimed to discuss novel theoretical and applied research focused on different aspects of software security/dependability, as software is at the heart of the cyber infrastructure.
Date: January 1, 2008
Creator: Sheldon, Frederick T; Krings, Axel; Abercrombie, Robert K & Mili, Ali
System: The UNT Digital Library
Bacteria in Permafrost (open access)

Bacteria in Permafrost

Significant numbers of viable ancient microorganisms are known to be present within the permafrost. They have been isolated in both polar regions from the cores up to 400 m deep and ground temperatures of -27 C. The age of the cells corresponds to the longevity of the permanently frozen state of the soils, with the oldest cells dating back to {approx}3 million years in the Arctic, and {approx}5 million years in the Antarctic. They are the only life forms known to have retained viability over geological time. Thawing of the permafrost renews their physiological activity and exposes ancient life to modern ecosystems. Thus, the permafrost represents a stable and unique physicochemical complex, which maintains life incomparably longer than any other known habitats. If we take into account the depth of the permafrost layers, it is easy to conclude that they contain a total microbial biomass many times higher than that of the soil cover. This great mass of viable matter is peculiar to permafrost only.
Date: January 1, 2008
Creator: Gilichinsky, David A.; Vishnivetskaya, Tatiana A.; Petrova, Maya A.; Spirina, Elena V.; Mamikin, Vladimir & Rivkina, Elizaveta
System: The UNT Digital Library
Virtual Human Problem Solving Environments (open access)

Virtual Human Problem Solving Environments

Abstract. Interest in complex integrated digital or virtual human modeling has seen a significant increase over the last decade. Coincident with that increased interest, Oak Ridge National Laboratory (ORNL) initiated the development of a human simulation tool, the Virtual Human. The Virtual Human includes a problem-solving environment (PSE) for implementing the integration of physiological models in different programming languages and connecting physiological function to anatomy. The Virtual Human PSE (VHPSE) provides the computational framework with which to develop the concept of a "Virtual Human." Supporting the framework is a data definition for modeling parameters, PhysioML, a Virtual Human Database (VHDB), and a Web-based graphical user interface (GUI) developed using Java. Following description of the VHPSE, we discuss four example implementations of models within the framework. Further expansion of a human modeling environment was carried out in the Defense Advanced Research Projects Agency Virtual Soldier Project. SCIRun served as the Virtual Soldier problem solving environment (VSPSE). We review and compare specific developments in these projects that have significant potential for the future of Virtual Human modeling and simulation. We conclude with an evaluation of areas of future work that will provide important extensions to the VHPSE and VSPSE and make possible …
Date: January 1, 2008
Creator: Ward, Richard C.; Pouchard, Line Catherine; Munro, Nancy B. & Fischer, Sarah Kathleen
System: The UNT Digital Library
[Abilene City Council Minutes: 2008] (open access)

[Abilene City Council Minutes: 2008]

Ledger containing minutes of the City Council in Abilene, Texas documenting the group's discussions and activities from January 10, 2008 to December 18, 2008.
Date: 2008-01-10/2008-12-18
Creator: Abilene (Tex.)
System: The Portal to Texas History
[News Story Log: January 1 to June 30, 2008] (open access)

[News Story Log: January 1 to June 30, 2008]

Logbook from the KXAS-TV/NBC station in Fort Worth, Texas, documenting the names, locations, and run-times of video-taped news segments that aired each day from January through June in 2008.
Date: 2008-01/2008-06
Creator: KXAS-TV (Television station : Fort Worth, Tex.)
System: The UNT Digital Library
FCC Record, Volume 23, No. 1, Pages 1 to 666, January 2 - January 18, 2008 (open access)

FCC Record, Volume 23, No. 1, Pages 1 to 666, January 2 - January 18, 2008

Biweekly, comprehensive compilation of decisions, reports, public notices, and other documents of the U.S. Federal Communications Commission.
Date: January 2008
Creator: United States. Federal Communications Commission.
System: The UNT Digital Library
The Property Value Study and How to Protest: 2008 (open access)

The Property Value Study and How to Protest: 2008

Book providing background on the annual study conducted by the Texas Comptroller's Office to "determine the total taxable value of all property in each school district" (Government Code Section 403.302), as well as explanations for when and how the preliminary results may be disputed.
Date: January 2008
Creator: Texas. Comptroller's Office.
System: The Portal to Texas History