Supermassive black holes (SMBHs) are ubiquitous in the centers of galaxies. Their formation and subsequent evolution is inextricably linked to that of their host galaxies, and the study of galaxy formation is incomplete without the inclusion of SMBHs. The present work seeks to understand the growth and evolution of SMBHs through their interaction with the host galaxy and its environment. In the first part of the thesis (Chap. 2 and 3), we combine a simple semi-analytic model of outflows from active galactic nuclei (AGN) with a simulated dark matter density distribution to study the impact of SMBH feedback on cosmological scales. We find that constraints can be placed on the kinetic efficiency of such feedback using observations of the filling fraction of the Ly{alpha} forest. We also find that AGN feedback is energetic enough to redistribute baryons over cosmological distances, having potentially significant effects on the interpretation of cosmological data which are sensitive to the total matter density distribution (e.g. weak lensing). However, truly assessing the impact of AGN feedback in the universe necessitates large-dynamic range simulations with extensive treatment of baryonic physics to first model the fueling of SMBHs. In the second part of the thesis (Chap. 4-6) we …

Measurements of the inclusive diffractive Z {yields} {mu}{sup +}{mu}{sup -} cross section with gap requirement for M{sub {mu}}{sub {mu}} > 40 GeV at {radical} s = 1.96 TeV and fraction of Z bosons produced diffractively with gap requirement from Z inclusive production are presented. The measurements are performed using a data sample corresponding to an integrated luminosity of 820 pb{sup -1}, collected with the D0 detector at the Tevatron, between 2002 to 2005. A total of 39945 di-muons events are selected and final results of: {sigma}{sub Diff}{sup gap} x Br(Z/{gamma}* {yields} {mu}{sup +}{mu}{sup -}) = 4.09 {+-} 0.64(stat.) {+-} 0.88(syst.) {+-} 0.27(lumi.) pb and, R{sub Diff}{sup gap} = 1.92 {+-} 0.30(stat.) {+-} 0.41(syst.) {+-} 0.12(lumi) % are obtained. In addition, d{sigma}/d{zeta} and d{sigma}/dy distributions are presented and they are compared with diffractive montecarlo (POMWIG). A reasonable agreement is obtained in this comparation. Finally, comparison of fraction of Z bosons produced diffractively with gap requirement (gap fraction) as measured with D0 during Run I of the Tevatron is compared. A good agreement is found for gap fraction results.

A search for the muon neutrino magnetic moment was conducted using the Mini-BooNE low energy neutrino data. The analysis was performed by analyzing the elastic scattering interactions of muon neutrinos on electrons. The analysis looked for an excess of elastic scattering events above the Standard Model prediction from which a limit on the neutrino magnetic could be set. In this thesis, we report an excess of 15.3 {+-} 6.6(stat){+-}4.1(syst) {nu}{sub {mu}e} events above the expected background. At 90% C.L., we derived a limit on the muon neutrino magnetic moment of 12.7 x 10{sup -10} {micro}{sub B}. The other analysis reported in this thesis is a measurement of charged current single pion production (CC{pi}{sup +}) to charged current quasi elastic (CCQE) interactions cross sections ratio. This measurement was performed with two different fitting algorithms and the results from both fitters are consistent with each other.

This thesis describes a measurement of the lifetime of the {Lambda}{sub b}{sup 0} baryon, performed using data from proton-antiproton collisions at a centre of mass energy of 1.96 TeV. The decay {Lambda}{sub b}{sup 0} {yields} {Lambda}{sub c}{sup +}{mu}{sup -}{ovr P{nu}}{sub {mu}}X was reconstructed in approximately 1.3 fb{sup -1} of data recorded by the D0 detector in 2002-2006 during Run II of the Fermilab Tevatron collider. A signal of 4437 {+-} 329 {Lambda}{sub c}{sup +}{mu}{sup -} pairs was obtained, and the {Lambda}{sub b}{sup 0} lifetime was measured using a binned {chi}{sup 2} fit, which gives a value {tau}({Lambda}{sub b}{sup 0}) = 1.290{sub -0.110}{sup +0.119}(stat){sub -0.091}{sup +0.085}(syst) ps. This result is consistent with the world average and is one of the most precise measurements of this quantity.

This thesis studies the high-energy collisions of protons and antiprotons. The data used in the measurement were collected during 2004-2005 with the D0 detector at the Tevatron Collider of the Fermi National Accelerator Laboratory and correspond to 0.7 fb{sup -1} of integrated luminosity. High energy hadron collisions usually produce collimated sprays of particles called jets. The energy of the jets is measured using a liquid Argon-Uranium calorimeter and the production angle is determined with the help of silicon microstrip and scintillating fiber trackers. The inclusive jet cross section in proton-antiproton collisions is measured as a function of jet transverse momentum p{sub T} in six bins of jet rapidity at the center-of-mass energy {radical}s = 1.96 TeV. The measurement covers jet transerve momenta from 50 GeV up to 600 GeV and jet rapidities up to |y| = 2.4. The data are collected using a set of seven single jet triggers. Event and jet cuts are applied to remove non-physical backgrounds and cosmic-ray interactions. The data are corrected for jet energy calibration, cut and trigger efficiencies and finite jet p{sub T} resolution. The corrections are determined from data and the methods are tested with Monte Carlo simulation. The main experimental challenges in …

Interactions of protons (p) with the NuMI (Neutrinos at the Main Injector) target are used to create the neutrino beam for the MINOS (Main Injector Neutrino Oscillation Search) Experiment. Using the MIPP (Main Injector Particle Production) experimental apparatus, the production of charged pions and kaons in p+NuMI interactions is studied. The data come from a sample of 2 x 10{sup 6} events obtained by MIPP using the 120 GeV/c proton beam from the Main Injector at Fermi National Accelerator Laboratory in Illinois, USA. Pions and kaons are identified by measurement in a Ring Imaging Cherenkov detector. Presented are measurements of {pi}{sup -}/{pi}{sup +}, K{sup -}/K{sup +}, {pi}{sup +}/K{sup +} and {pi}{sup -}/K{sup -} production ratios in the momentum range p{sub T} < 2 GeV/c transversely and 20 GeV/c < p{sub z} < 90 GeV/c longitudinally. Also provided are detailed comparisons of the MIPP NuMI data with the MIPP Thin Carbon data, the MIPP Monte Carlo simulation and the current MINOS models in the relevant momentum ranges.

A search for the Technicolor processes p{bar p} {yields} {rho}{sub T}{sup {+-}} {yields} W{sup {+-}}{pi}{sub T}{sup 0} {yields} {mu}{nu}b{bar b} and p{bar p} {yields} {rho}{sub T}{sup 0} {yields} W{sup {+-}}{pi}{sub T}{sup {+-}} {yields} {mu}{nu}b{bar c} is conducted at the D0 detector. Selection requirements are individually optimized for each of twenty mass hypotheses by means of a random grid search. No excess is seen in a 291 pb{sup -1} data set and 95% confidence level upper limits are set on the Technicolor production cross section. The mass combinations M{sub {rho}} = 195 GeV/c{sup 2}, M{sub {pi}} = 100 GeV/c{sup 2} and M{sub {rho}} = 200 GeV/c{sup 2}, M{sub {pi}} = 105 GeV/c{sup 2} are excluded for the choice of the Technicolor scale parameter M{sub V} = 500 GeV.

The top quark is the heaviest and most mysterious of the known elementary particles. Therefore, careful study of its production rate and other properties is of utmost importance for modern particle physics. The Tevatron is the only facility currently capable of studying top quark properties by on-shell production. Measurement of the top quark pair production cross section is one of the major goals of the Tevatron Run II physics program. It provides an excellent test of QCD at energies exceeding 100 GeV. We report on a new measurement of p{bar p} {yields} t{bar t} production at {radical} = 1.96 TeV using 350 pb{sup -1} of data collected with the D0 detector between 2002 and 2005. We focus on the final state where a W boson from one of the top quarks decays into a {tau} lepton and its associated neutrino, while the other decays into a quark-antiquark pair. We aim to select those events in which the {tau} lepton subsequently decays to one or three charged hadrons, zero or more neutral hadrons and a tau neutrino (the charge conjugate processes are implied in all of the above). The observable signature thus consists of a narrow calorimeter shower with associated track(s) …

This analysis focuses on a low mass Higgs boson search with 1.7 fb{sup -1} of data. The focus is on Higgs events in which it is produced in association with a W or Z boson. Such events are expected to leave a distinct signature of large missing transverse energy for either a Z {yields} {nu}{nu} decay or a leptonic W decay in which the lepton goes undetected, as well as jets with taggable secondary vertices from the H {yields} b{bar B} decay. Utilizing a new track based technique for removing QCD multi-jet processes as well as a neural network discriminant, an expected limit of 8.3 times the Standard Model prediction at the 95% CL for a Higgs boson mass of 115 GeV/c{sup 2} is calculated, with an observed limit of 8.0*SM.

The experimental study of rare decays of hadrons containing the b quark has been a fertile ground for some time, and keeps being one of the most interesting subjects in high energy physics. It has improved our understanding of hadronic processes, and allows investigating various aspects of the Standard Model and searching for hints of physics beyond the Standard Model. Examples are the comparison of branching fractions of charmless modes with predictions of models, the constraints on CKM angles (B{sup 0} {yields} {pi}{sup +}{pi}{sup -}, B {yields} DK, with D in suppressed modes), the observation of purely leptonic modes (B{sup {+-}} {yields} {tau}{sup {+-}}{nu}), the recently established difference in A{sub CP} between B{sup 0} {yields} K{sup +}{pi}{sup -} and B{sup {+-}} {yields} K{sup {+-}}{pi}{sup 0}, suspected to be a hint new physics. All of them came from a long and successful experimental activity with e{sup +}e{sup -} collisions at the {Upsilon}(4S) resonance. With hadronic colliders now coming into play, the study of rare decays is reaching new heights. Given the high cross section for production of all kinds of B hadrons, the record luminosities now provided by the Tevatron collider, and the LHC program in view for the next years, …

Over the past decades the current theoretical description, the Standard Model of elementary particle physics, was solidified by many measurements as the basic theory describing fundamental particles and their interactions. It is extremely successful in explaining the high-precision data collected by experiments so far. The Standard Model includes several intrinsic parameters which have to be measured in experiments. Independent analyses of different physical processes can constrain those parameters. By combining those measurements physicists might be sensitive to physics beyond the Standard Model. If they are inconsistent it allows to get a hint on the theory that might supersede the Standard Model. The goal of the analysis presented in this thesis is to measure some of these parameters in the B{sub s} meson system. The B{sub s} meson, consisting of an anti-b and s quark, is not a pure mass eigenstate, thus allowing a B{sub s} meson to oscillate into its antiparticle via weak interacting processes. This is a general feature of any neutral meson. The history of meson mixing measurements is more then 50 years old. It was first observed in the kaon system. The oscillation in the B{sub d} system was measured very precisely by the B factories, whereas …

The author presents a search for excited or exotic electrons decaying to an electron and a photon with high transverse momentum. An oppositely charged electron is produced in association with the excited electron, yielding a final state dielectron + photon signature. The discovery of excited electrons would be a first indication of lepton compositeness. They use {approx} 202 pb{sup -1} of data collected in p{bar p} collisions at {radical}s = 1.96 TeV with the Collider Detector at Fermilab during March 2001 through September 2003. The data are consistent with standard model expectations. Upper limits are set on the experimental cross-section {sigma}({bar p}p {yields} ee* {yields} ee{gamma}) at the 95% confidence level in a contact-interaction model and a gauge-mediated interaction model. Limits are also presented as exclusion regions in the parameter space of the excited electron mass (M{sub e*}) and the compositeness energy scale ({Lambda}). In the contact-interaction model, for which there are no previously published limits, they find M{sub e*} < 906 GeV is excluded for M{sub e*} = {Lambda}. In the gauge-mediated model, the exclusion region in the M{sub e*} versus the phenomenological coupling f/{Lambda} parameter space is extended to M{sub e*} < 430 GeV for f/{Lambda} {approx} 10{sup …

The WARP code is a robust electrostatic particle-in-cell simulation package used to model charged particle beams with strong space-charge forces. A fundamental operation associated with seeding detailed simulations of a beam transport channel is to generate initial conditions where the beam distribution is matched to the structure of a periodic focusing lattice. This is done by solving for periodic, matched solutions to a coupled set of ODEs called the Kapchinskij-Vladimirskij (KV) envelope equations, which describe the evolution of low-order beam moments subject to applied lattice focusing, space-charge defocusing, and thermal defocusing forces. Recently, an iterative numerical method was developed (Lund, Chilton, and Lee, Efficient computation of matched solutions to the KV envelope equations for periodic focusing lattices, Physical Review Special Topics-Accelerators and Beams 9, 064201 2006) to generate matching conditions in a highly flexible, convergent, and fail-safe manner. This method is extended and implemented in the WARP code as a Python package to vastly ease the setup of detailed simulations. In particular, the Python package accommodates any linear applied lattice focusing functions without skew coupling, and a more general set of beam parameter specifications than its predecessor. Lattice strength iteration tools were added to facilitate the implementation of problems with …

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This work presents measurements of two diffractive production ratio for heavy flavour physics with the use of a reconstructed J/{psi} {yields} {mu}{sup +}{mu}{sup -} sample in p{bar p} collisions at {radical}s = 1.96 TeV using the D0 detector at Fermilab Tevatron. These events were selected using the Luminosity Monitor detectors, the calorimeter system and the muon system in a pseudo-rapidity region with range 2.7 {le} |{eta}| {le} 4.4. The measured ratio were estimated to be N{sub diff}{sup J/{psi}}/N{sub total}{sup J/{psi}} = (1.74 {+-} 0.16(stat) {+-} 0.13(syst))% e N{sub diff}{sup b}/N{sub total}{sup b} = (0.79 {+-} 0.11(stat) {+-} 0.23(syst))%.

A measurement of the t{bar t} production cross section in the lepton+jets channels with the D0 detector at {radical}s = 1.96 TeV using the lifetime-tagging techniques is presented. The t{bar t} cross section is estimated from the combination of the e+jets and {mu}+jets channels. The obtained result {sigma}{sub t{bar t}} = 7.47{sub -1.14}{sup +1.22}(stat){sub -1.03}{sup +1.65}(syst) {+-} 0.49(lumi) pb is consistent with the Standard Model expectation.

The standard model of elementary particle physics (SM) predicts, besides the top-quark pair production via the strong interaction, also the electroweak production of single top-quarks [19]. Up to now, the Fermilab Tevatron proton-antiproton-collider is the only place to produce and study top quarks emerging from hadron-hadron-collisions. Top quarks were directly observed in 1995 during the Tevatron Run I at a center-of-mass energy of {radical}s = 1.8 TeV simultaneously by the CDF and D0 Collaborations via the strong production of top-quark pairs. Run II of the Tevatron data taking period started 2001 at {radical}s = 1.96 TeV after a five year upgrade of the Tevatron accelerator complex and of both experiments. One main component of its physics program is the determination of the properties of the top quark including its electroweak production. Even though Run II is still ongoing, the study of the top quark is already a successful endeavor, confirmed by dozens of publications from both Tevatron experiments. A comprehensive review of top-quark physics can be found in reference. The reasons for searching for single top-quark production are compelling. As the electroweak top-quark production proceeds via a Wtb vertex, it provides the unique opportunity of the direct measurement of the …

Magnetic resonance is the most powerful analytical tool used by chemists today. Its applications range from determining structures of large biomolecules to imaging of human brains. Nevertheless, magnetic resonance remains a relatively young field, in which many techniques are currently being developed that have broad applications. In this dissertation, two new techniques are presented, one that enables the determination of torsion angles in solid-state peptides and proteins, and another that involves imaging of heterogenous materials at ultra-low magnetic fields. In addition, structural studies of the prion protein via solid-state NMR are described. More specifically, work is presented in which the dependence of chemical shifts on local molecular structure is used to predict chemical shift tensors in solid-state peptides with theoretical ab initio surfaces. These predictions are then used to determine the backbone dihedral angles in peptides. This method utilizes the theoretical chemicalshift tensors and experimentally determined chemical-shift anisotropies (CSAs) to predict the backbone and side chain torsion angles in alanine, leucine, and valine residues. Additionally, structural studies of prion protein fragments are described in which conformationally-dependent chemical-shift measurements were made to gain insight into the structural differences between the various conformational states of the prion protein. These studies are of …

The production of jets in association with a Z/{gamma}* boson is an example of an important class of processes at hadron colliders, namely vector boson + jet (V + jet) production. Comparisons of measurements of this class of processes with theory predictions constitute an important, fundamental test of the Standard Model of particle physics, and of the theory of QCD in particular. While having a smaller cross section than other V +jet processes, Z/{gamma}*({yields} e{sup +}e{sup -}) + jets production, with Z/{gamma}* {yields} e{sup +}e{sup -}/{mu}{sup +}{mu}{sup -}, has a distinct experimental signature allowing for measurements characterized by low backgrounds and a direct, precise measurement of the properties of the decay products of the Z/{gamma}* boson. In this thesis, several new measurements of the properties of jets produced in association with a Z/{gamma}* boson in p{bar p} collisions at {radical}s = 1.96 TeV are presented. The cross section for Z/{gamma}*({yields} e{sup +}e{sup -}) + N jet production (N {le} 3) is measured, differential in the transverse momentum of the Nth jet in the event, normalized to the inclusive Z/{gamma}* cross section. Also, the cross section for Z/{gamma}*({yields} e{sup +}e{sup -}) + N jets (N {ge} 1) is measured, differential in …

This thesis presents the analysis of the double differential dijet mass cross section, measured at the D0 detector in Batavia, IL, using p{bar p} collisions at a center of mass energy of {radical}s = 1.96 TeV. The dijet mass was calculated using the two highest p{sub T} jets in the event, with approximately 0.7 fb{sup -1} of data collected between 2004 and 2005. The analysis was presented in bins of dijet mass (M{sub JJ}) and rapidity (y), and extends the measurement farther in M{sub JJ} and y than any previous measurement. Corrections due to detector effects were calculated using a Monte Carlo simulation and applied to data. The errors on the measurement consist of statistical and systematic errors, of which the Jet Energy Scale was the largest. The final result was compared to next-to-leading order theory and good agreement was found. These results may be used in the determination of the proton parton distribution functions and to set limits on new physics.

MiniBooNE seeks to corroborate or refute the unconfirmed oscillation result from the LSND experiment. If correct, the result implies that a new kind of massive neutrino, with no weak interactions, participates in neutrino oscillations. MiniBooNE searches for {nu}{sub {mu}} {yields} {nu}{sub e} oscillations with the Fermi National Accelerator Laboratory 8 GeV beam line, which produces a {nu}{sub {mu}} beam with an average energy of {approx} 0.8 GeV and an intrinsic {nu}{sub e} content of 0.4%. The neutrino detector is a 6.1 m radius sphere filled with CH{sub 2}, viewed by 1540 photo-multiplier tubes, and located 541 m downstream from the source. This work focuses on the estimation of systematic errors associated with the neutrino flux and neutrino interaction cross section predictions, and in particular, on constraining these uncertainties using in-situ MiniBooNE {nu}{sub {mu}} charged current quasielastic (CCQE) scattering data. A data set with {approx} 100,000 events is identified, with 91% CCQE purity. This data set is used to measure several parameters of the CCQE cross section: the axial mass, the Fermi momentum, the binding energy, and the functional dependence of the axial form factor on four-momentum transfer squared. Constraints on the {nu}{sub {mu}} and {nu}{sub e} fluxes are derived using …

Slant-path buildup factors for photons between 1 keV and 10 MeV for nine radiation shielding materials (air, aluminum, concrete, iron, lead, leaded glass, polyethylene, stainless steel, and water) are calculated with the most recent cross-section data available using Monte Carlo and discrete ordinates methods. Discrete ordinates calculations use a 244-group energy structure that is based on previous research at Los Alamos National Laboratory (LANL), but extended with the results of this thesis, and its focused studies on low-energy photon transport and the effects of group widths in multigroup calculations. Buildup factor calculations in discrete ordinates benefit from coupled photon/electron cross sections to account for secondary photon effects. Also, ambient dose equivalent (herein referred to as dose) buildup factors were analyzed at lower energies where corresponding response functions do not exist in literature. The results of these studies are directly applicable to radiation safety at LANL, where the dose modeling tool Pandemonium is used to estimate worker dose in plutonium handling facilities. Buildup factors determined in this thesis will be used to enhance the code's modeling capabilities, but should be of interest to the radiation shielding community.

The authors present a measurement of the cross section of b hadron (H{sub b}) production in p{bar p} collisions at {radical}s = 1.96 TeV using the CDF II detector at the Fermilab Tevatron. They use 83 pb{sup -1} of data taken between october 2002 and May 2003 that was collected with a trigger sensitive to high momentum muons and displaced tracks. They use partially reconstructed decays in the following modes: H{sub b} {yields} {mu}{sup -} {bar {nu}}{sub {mu}}D{sup 0}X, D{sup 0} {yields} K{sup -}{pi}{sup +}, and H{sub b} {yields} {mu}{sup -}{bar {nu}}{sub {mu}}D*{sup +} X, D*{sup +} {yields} D{sup 0}{pi}{sup +}, D{sup 0} {yields} K{sup -} {pi}{sup +}, and their charge conjugates. They correct for the backgrounds from c{bar c} and b{bar b} decays, for trigger and reconstruction efficiencies, and for detector acceptance. They report the total cross section above a minimum transverse momentum (p{sub T}) of 9 GeV/c for the rapidity range |y| {le} 0.6.

A Jet Charge Tagger algorithm for b-flavour tagging for the measurement of {Delta}m{sub s} at CDF has been presented. The tagger is based on a b-track probability variable and a b-jet probability variable, both obtained by combining the information available in b{bar b} events with a Neural Network. The tagging power measured on data is 0.917 {+-} 0.031% e+SVT sample; 0.938 {+-} 0.029% {mu}+SVT sample which is {approx}30% larger than the cut based Jet Charge Tagger employed for the B{sub s}{sup 0} mixing analysis presented by CDF at the Winter Conferences 2005. The improved power of the tagger is due to the selection of the b-jet with a Neural Network variable, which uses correlated jet variables in an optimal way. The development of the track and jet probability has profited from studies performed on simulated events, which allowed to understand better the features of b{bar b} events. For the first time in the CDF B group a Monte Carlo sample comprising flavour creation and additional b{bar b} production processes has been examined and compared to Run II data. It has been demonstrated that a Monte Carlo sample with only flavour creation b{bar b} production processes is not sufficient to describe …