I recently spent a summer as an intern at the Lawrence Livermore National Laboratory. I worked on a project involving the real-time, reagentless, single cell detection of aerosolized pathogens using a novel mass spectrometry approach called Bio-Aerosol Mass Spectrometry (BAMS). Based upon preliminary results showing the differentiation capabilities of BAMS, I would like to explore the development and use of this novel detection system in the context of both environmental and clinical sample pathogen detection. I would also like to explore the broader public health applications that a system such as BAMS might have in terms of infectious disease prevention and control. In order to appreciate the potential of this instrument, I will demonstrate the need for better pathogen detection methods, and outline the instrumentation, data analysis and preliminary results that lead me toward a desire to explore this technology further. I will also discuss potential experiments for the future along with possible problems that may be encountered along the way.

Quantitative knowledge of the fundamental structure and substrate binding, as well as the direct measurement of conformational changes, are essential to the development of self-assembled monolayers (SAMs) and surface-attached interlocking molecules, catenanes and rotaxanes. These monolayers are vital to development of nano-mechanical, molecular electronic, and biological/chemical sensor applications. This dissertation investigates properties of functionalized SAMs in sulfur-gold based adsorbed molecular monolayers using quantitative spectroscopic techniques including near-edge x-ray absorption fine structure spectroscopy (NEXAFS) and x-ray photoelectron spectroscopy (XPS). The stability of the gold-thiolate interface is addressed. A simple model SAM consisting of dodecanethiol adsorbed on Au(111) degrades significantly in less than 24 hours under ambient laboratory air. S 2p and O 1s XPS show the gold-bound thiolates oxidize to sulfinates and sulfonates. A reduction of organic material on the surface and a decrease in order are observed as the layer degrades. The effect of the carboxyl vs. carboxylate functionalization on SAM structure is investigated. Carboxyl-terminated layers consisting of long alkyl-chain thiols vs. thioctic acid with short, sterically separated, alkyl groups are compared and contrasted. NEXAFS shows a conformational change, or chemical switchability, with carboxyl groups tilted over and carboxylate endgroups more upright. Surface-attached loops and simple surface-attached rotaxanes are quantitatively …

Highly charged ions are extracted from an electron beam ion trap and guided to Retrap, a cryogenic Penning trap, where they are merged with laser cooled Be{sup +} ions. The Be{sup +} ions act as a coolant for the hot highly charged ions and their temperature is dropped by about 8 orders of magnitude in a few seconds. Such cold highly charged ions form a strongly coupled nonneutral plasma exhibiting, under such conditions, the aggregation of clusters and crystals. Given the right mixture, these plasmas can be studied as analogues of high density plasmas like white dwarf interiors, and potentially can lead to the development of cold highly charged ion beams for applications in nanotechnology. Due to the virtually non existent Doppler broadening, spectroscopy on highly charged ions can be performed to an unprecedented precision. The density and the temperature of the Be{sup +} plasma were measured and highly charged ions were sympathetically cooled to similar temperatures. Molecular dynamics simulations confirmed the shape, temperature and density of the highly charged ions. Ordered structures were observed in the simulations.

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Determination of application times-to-solution for large-scale clustered computers continues to be a difficult problem in high-end computing, which will only become more challenging as multi-core consumer machines become more prevalent in the market. Both researchers and consumers of these multi-core systems desire reasonable estimates of how long their programs will take to run (time-to-solution, or TTS), and how many resources will be consumed in the execution. Currently there are few methods of determining these values, and those that do exist are either overly simplistic in their assumptions or require great amounts of effort to parameterize and understand. One previously untried method is queuing network modeling (QNM), which is easy to parameterize and solve, and produces results that typically fall within 10 to 30% of the actual TTS for our test cases. Using characteristics of the computer network (bandwidth, latency) and communication patterns (number of messages, message length, time spent in communication), the QNM model of the NAS-PB CG application was applied to MCR and ALC, supercomputers at LLNL, and the Keck Cluster at USF, with average errors of 2.41%, 3.61%, and -10.73%, respectively, compared to the actual TTS observed. While additional work is necessary to improve the predictive capabilities of …

In the past decades, there has been increasing interest in pulsed high power RF sources for building high-gradient high-energy particle accelerators. Passive RF pulse compression systems have been used in many applications to match the available RF sources to the loads requiring higher RF power but a shorter pulse. Theoretically, an active RF pulse compression system has the advantage of higher efficiency and compactness over the passive system. However, the key component for such a system an element capable of switching hundreds of megawatts of RF power in a short time compared to the compressed pulse width is still an open problem. In this dissertation, we present a switch module composed of an active window based on the bulk effects in semiconductor, a circular waveguide three-port network and a movable short plane, with the capability to adjust the S-parameters before and after switching. The RF properties of the switch module were analyzed. We give the scaling laws of the multiple-element switch systems, which allow the expansion of the system to a higher power level. We present a novel overmoded design for the circular waveguide three-port network and the associated circular-to-rectangular mode-converter. We also detail the design and synthesis process of …

The D0 detector underwent a major upgrade to maximize its ability to fully exploit Run II at the Fermilab Tevatron, the world's highest energy collider. The upgrade included a completely new central tracking system with an outer scintillating fiber tracker and an inner silicon vertex detector all within a 2T superconducting solenoid. This thesis describes the development of high level trigger algorithms including vertexing, impact parameter significance and invariant mass, that utilize tracks from these detectors. One of the main physics goals of Run II is the observation of B{sub s} oscillations. This measurement, which cannot be performed at the B factories, will significantly constrain the ''unitarity triangle'' associated with Cp violation and so probe the Standard Model of particle physics. Furthermore this is an interesting measurement as the study of mixing in meson systems has a long history for revealing new physics. The second part of this thesis presents a study of the hadronic decay B{sub s} {yields} D{sub s}{pi}. This important mode provides the best proper time resolution for B{sub s} mixing and is reconstructed for the first time at D0. Projections on the sensitivity to B{sub s} oscillations are then presented.

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Presented is a measurement of the simultaneous production of a W{sup {+-}} boson in association with a second weak boson (W{sup {+-}} or Z{sup 0}) in p{bar p} collisions at {radical}s = 1.96 TeV. Events are consider with one electron or one muon, missing transverse energy, and at least two hadronic jets. The data were collected by the D0 detector in Run IIa of the Tevatron accelerator and correspond to 1.07 fb{sup -1} of integrated luminosity for each of the two channels (WW/WZ {yields} e{nu}q{bar q} and WW/WZ {yields} {mu}{nu}q{bar q}). The cross section for WW + WZ production is measured to be 20.2 {+-} 2.5(stat) {+-} 3.6(sys) {+-} 1.2(lum) pb with a Gaussian significance of 4.4 standard deviations above the background-only scenario. This measurement is consistent with the Standard Model prediction and represents the first direct evidence for WW and WZ production with semi-leptonic decays at a hadron collider.

Quantum Chromodynamics (QCD) is the gauge theory that governs the strong interactions between quarks and gluons inside hadrons like, for example, protons and neutrons. It shows two well established characteristics, related to the non-Abelian nature of the theory, that dominate its phenomenology: asymptotic freedom and color confinement. The dependence of the strong coupling, {alpha}{sub s}(Q{sup 2}), with the hard scale is such that it decreases with decreasing the distance between partons. This allows to perform precise theoretical calculations at large energy transfer (short distances) using perturbative QCD (pQCD). On the other hand, the strength of the interaction increases with the distance between partons and thus colored quarks and gluons are forced to be confined inside colorless hadrons.

This first issue of the ''ICF Semiannual Report'' contains articles whose diverse subjects attest to the broad technical and scientific challenges that are at the forefront of the ICF program at LLNL. The first article describes the progress being made at solving the surface roughness problem on capsule mandrels. All NIF capsule options, except machined beryllium, require a mandrel upon which the ablator is deposited. This mandrel sets the baseline sphericity of the final capsule. Problems involving defects in the mandrel have been overcome using various techniques so that 2-mm-size mandrels can now be made that meet the NIF design specification. The second article validates and provides a detailed numerical investigation of the shadowgraph technique currently used to diagnose the surface roughness of a fuel ice layer inside of a transparent capsule. It is crucial for the success of the indirect-drive ignition targets that the techniques used to characterize ice-surface roughness be well understood. This study identifies methods for analyzing the bright band that give an accurate measure of the ice-surface roughness. The third article describes a series of realistic laser and target modifications that can lead to 3-4 times more energy coupling and 10 times greater yield from a …

The development and demonstration of inertial fusion is incredibly challenging because it requires simultaneously controlling and precisely measuring parameters at extreme values in energy, space, and time. The challenges range from building megajoule (10{sup 6} J) drivers that perform with percent-level precision to fabricating targets with submicron specifications to measuring target performance at micron scale (10{sup -6} m) with picosecond (10{sup -12} s) time resolution. Over the past 30 years in attempting to meet this challenge, the inertial fusion community around the world has invented new technologies in lasers, particle beams, pulse power drivers, diagnostics, target fabrication, and other areas. These technologies have found applications in diverse fields of industry and science. Moreover, simply assembling the teams with the background, experience, and personal drive to meet the challenging requirements of inertial fusion has led to spin-offs in unexpected directions, for example, in laser isotope separation, extreme ultraviolet (EUV) lithography for microelectronics, compact and inexpensive radars, advanced laser materials processing, and medical technology. It is noteworthy that more than 40 R&D 100 awards, the ''Oscars of applied research'' have been received by members of the inertial fusion community over this period. Not surprisingly, the inertial fusion community has created many new …

Metal/ceramic interfaces can be found in many engineering applications including microelectronic packaging, multi-layered films, coatings, joints, and composite materials. In order to design reliable engineering systems that contain metal/ceramic interfaces, a comprehensive understanding of interfacial and near interfacial failure mechanisms is necessary.

Short story written by a student in the UNT Honors College about a group of people observing a friend as he delves into films and the occult.

The discovery that ultra-intense laser pulses (I > 10{sup 18} W/cm{sup 2}) can produce short pulse, high energy proton beams has renewed interest in the fundamental mechanisms that govern particle acceleration from laser-solid interactions. Experiments have shown that protons present as hydrocarbon contaminants on laser targets can be accelerated up to energies > 50 MeV. Different theoretical models that explain the observed results have been proposed. One model describes a front-surface acceleration mechanism based on the ponderomotive potential of the laser pulse. At high intensities (I > 10{sup 18} W/cm{sup 2}), the quiver energy of an electron oscillating in the electric field of the laser pulse exceeds the electron rest mass, requiring the consideration of relativistic effects. The relativistically correct ponderomotive potential is given by U{sub p} = ([1 + I{lambda}{sup 2}/1.3 x 10{sup 18}]{sup 1/2} - 1) m{sub o}c{sup 2}, where I{lambda}{sup 2} is the irradiance in W{micro}m{sup 2}/cm{sup 2} and m{sub o}c{sup 2} is the electron rest mass.At laser irradiance of I{lambda}{sup 2} {approx} 10{sup 20} W{micro}m{sup 2}/cm{sup 2}, the ponderomotive potential can be of order several MeV. A few recent experiments--discussed in Chapter 3 of this thesis--consider this ponderomotive potential sufficiently strong to accelerate protons from the …

Lasershot peening is an emerging modern process that impresses a compressive stress into the surfaces of metals, improving their operational lifetime. Almost everyone is familiar with taking a strip of metal or a wire and bending it multiple times until it breaks. In this situation, when the metal is bent, the surface of outer radius is stretched into a tensile state. Under tension, any flaw or micro-crack will grow in size with each bending of the metal until the crack grows through the entire strip, breaking it into two pieces. Flexure of metal components occurs in most applications. The teeth of a transmission gear flex as they deliver torque in a vehicle. Springs and valves flex every time they transfer loads. If fatigue failure from flexing occurs in the tooth of a transmission gear of light or heavy vehicles, in a fan blade of a diesel engine, in shock-absorbers or safety-related supporting structures, significant loss of assets and potentially loss of human life occurs. Lasershot peening, better than any other technique, has the potential to extend the fatigue lifetime of metal components. In the process, the laser generates a high intensity shock wave at the surface of the metal, straining …

Thesis written by a student in the UNT Honors College discussing the origins of life on Earth and how layered double hydroxides were involved.

As the dimensions of semiconductor devices are scaled down, in order to achieve higher levels of integration, optical lithography will no longer be sufficient for the needs of the semiconductor industry. Alternative next-generation lithography (NGL) approaches, such as extreme ultra-violet (EUV), X-ray, electron-beam, and ion projection lithography face some challenging issues with complicated mask technology and low throughput. Among the four major alternative NGL approaches, ion beam lithography is the only one that can provide both maskless and resistless patterning. As such, it can potentially make nano-fabrication much simpler. This thesis investigates a focused ion beam system for maskless, resistless patterning that can be made practical for high-volume production. In order to achieve maskless, resistless patterning, the ion source must be able to produce a variety of ion species. The compact FIB system being developed uses a multicusp plasma ion source, which can generate ion beams of various elements, such as O{sub 2}{sup +}, BF{sub 2}{sup +}, P{sup +} etc., for surface modification and doping applications. With optimized source condition, around 85% of BF{sub 2}{sup +}, over 90% of O{sub 2}{sup +} and P{sup +} have been achieved. The brightness of the multicusp-plasma ion source is a key issue for …

The Higgs mechanism preserves the gauge symmetries of the Standard Model while giving masses to the W, Z bosons. Supersymmetry, which protects the Higgs boson mass scale from quantum corrections, predicts at least 5 Higgs bosons, none of which has been directly observed. This thesis presents a search for neutral Higgs bosons, produced in association with bottom quarks. The production rate is greatly enhanced at large values of the Supersymmetric parameter tan {beta}. High-energy p{bar p} collision data, collected from Run II of the Fermilab Tevatron using the D0 detector, are analyzed. In the absence of a signal, values of tan {beta} > 80-120 are excluded at 95% Confidence Level (C.L.), depending on the (CP-odd) neutral Higgs boson mass (studied from 100 to 150 GeV/c{sup 2}).

The author presents the measurement of p{bar p} {yields} Z/{gamma}* {yields} e{sup +}e{sup -} + X inclusive differential cross section as a function of boson rapidity. The data, which correspond to an integrated luminosity of 0.4 fb{sup -1}, were collected with D0 detector at Tevatron p{bar p} collider. At the Run II energy of {radical}s = 1.96 TeV, Z bosons are produced with rapidity out to {+-} 3. The cross section is measured in a mass range between 71 to 111 GeV for the allowed kinematic range.

The main topic of this thesis is the measurement of b-quark jet shapes at CDF. CDF is an experiment located at Fermilab, in the United States, which studies proton-antiproton collisions at a center of mass energy of 1.96TeV. To reach this energy, the particles are accelerated using the Tevatron accelerator which is currently the highest energy collider in operation. The data used for this analysis were taken between February 2002 and September 2004 and represent an integrated luminosity of about 300 pb{sup -1}. This is the first time that b-quark jet shapes have been measured at hadron colliders. The basis of this measurement lies in the possibility of enhancing the b-quark jet content of jet samples by requiring the jets to be identified as having a displaced vertex inside the jet cone. Such jets are called tagged. This enhances the b-quark jet fraction from about 5% before tagging to 20-40% after tagging, depending on the transverse momentum of the jets. I verified that it is possible to apply this secondary vertex tagging algorithm to different cone jet algorithms (MidPoint and JetClu) and different cone sizes (0.4 and 0.7). I found that the performance of the algorithm does not change significantly, …

The authors measure the time-dependent CP asymmetry parameters in B{sup 0} {yields} K{sup +}K{sup -}K{sup 0} based on a data sample of approximately 277 million B-meson pairs recorded at the {Upsilon}(4S) resonance with the BABAR detector at the PEP-II B-meson Factory at SLAC. They reconstruct two-body B{sup 0} decays to {phi}(1020)K{sub s}{sup 0} and {phi}(1020)K{sub L}{sup 0}. Using a time-dependent maximum-likelihood fit, they measure sin2{beta}{sub eff}({phi}K{sup 0}) = 0.48 {+-} 0.28 {+-} 0.10, and C({phi}K{sup 0}) = 0.16 {+-} 0.25 {+-} 0.09, where the first error is statistical, and the second is systematic. They also present measurements of the CP-violating asymmetries in the decay B{sup 0} {yields} f{sub 0}({yields} {pi}{sup +}{pi}{sup -})K{sub s}{sup 0}. The results are obtained from a data sample of 209 x 10{sup 6} {Upsilon}(4S) {yields} B{bar B} decays, also collected with the BABAR detector at the PEP-II asymmetric-energy B Factory at SLAC. From a time-dependent maximum-likelihood fit they measure the mixing-induced CP violation parameter S(f{sub 0}(980)K{sub S}{sup 0}) = - sin 2{beta}{sub eff}f{sub 0}(980)K{sub S}{sup 0} = -0.95{sub -0.23}{sup +0.32} {+-} 0.10 and the direct CP violation parameter C(f{sub 0}(980)K{sub S}{sup 0}) = - 0.24 {+-} 0.31 {+-} 0.15, where the first errors are statistical and …

A new measurement of the inclusive and differential production cross sections of J/{psi} mesons and b-hadrons in proton-antiproton collisions at {radical}s = 1960 GeV is presented. The data correspond to an integrated luminosity of 39.7 pb{sup -1} collected by the CDF Run II detector. The integrated cross section for inclusive J/{psi} production for all transverse momenta from 0 to 20 GeV/c in the rapidity range |y| < 0.6 is found to be 4.08 {+-} 0.02(stat){sub -0.33}{sup +0.36}(syst) {mu}b. The fraction of J/{psi} events from the decay of the long-lived b-hadrons is separated by using the lifetime distribution in all events with p{sub T}(J/{psi}) > 1.25 GeV/c. The total cross section for b-hadrons, including both hadrons and anti-hadrons, decaying to J/{psi} with transverse momenta greater than 1.25 GeV/c in the rapidity range |y(J/{psi})| < 0.6, is found to be 0.330 {+-} 0.005(stat){sub -0.033}{sup +0.036}(syst) {mu}b. Using a Monte Carlo simulation of the decay kinematics of b-hadrons to all final states containing a J/{psi}, the first measurement of the total single b-hadron cross section down to zero transverse momentum is extracted at sqrts = 1960 GeV. The total single b-hadron cross section integrated over all transverse momenta for b-hadrons in the rapidity …