In this paper the authors describe the approach to research, develop, and evaluate prototype middleware tools and architectures. The developed tools can be used by scientists to compose astronomical data analysis pipelines easily. They use the SuperMacho data pipelines as example applications to test the framework. they describe their experience from scheduling and running these analysis pipelines on massive parallel processing machines. they use MCR a Linux cluster machine with 1152 nodes and Luster parallel file system as the hardware test-bed to test and enhance the scalability of the tools.

This study examined waste feed and solvent limits for the Modular Caustic-Side Solvent Extraction Unit (MCU) currently being designed and built at the Savannah River Site (SRS) to remove cesium from highly alkaline radioactive waste. The study involved proposing ranges for 12 waste feed components (i.e., Na{sup +}, K{sup +}, Cs{sup +}, OH{sup -}, NO{sub 3}{sup -}, NO{sub 2}{sup -}, Cl{sup -}, F{sup -}, SO{sub 4}{sup 2-}, PO{sub 4}{sup 3-}, and CO{sub 3}{sup 2-}, and AlO{sub 2}{sup -}) through a compilation of SRS waste data. Statistical design methods were used to generate numerous wastes with varying compositions from the proposed ranges. An Oak Ridge National Laboratory (ORNL) model called SXFIT was used to predict the cesium extraction distribution coefficients (D-values) between the organic (solvent) phase and the aqueous waste phase using the waste component concentrations as inputs. The D-values from the SXFIT model were used as input along with MCU base case process parameters to a SASSE (Spreadsheet Algorithm for Stagewise Solvent Extraction) model to calculate final cesium concentrations for the MCU. The SASSE model was developed at Argonne National Laboratory (ANL). The SXFIT D-value and the waste component concentration data were used to develop a handier alternative model (neural …

The interaction and mixing of high-temperature melt and water is the important technical issue in the safety assessment of water-cooled reactors to achieve ultimate core coolability. For specific advanced light water reactor (ALWR) designs, deliberate mixing of the core-melt and water is being considered as a mitigative measure, to assure ex-vessel core coolability. The goal of this work is to provide the fundamental understanding needed for melt-water interfacial transport phenomena, thus enabling the development of innovative safety technologies for advanced LWRs that will assure ex-vessel core coolability. The work considers the ex-vessel coolability phenomena in two stages. The first stage is the melt quenching process and is being addressed by Argonne National Lab and University of Wisconsin in modified test facilities. Given a quenched melt in the form of solidified debris, the second stage is to characterize the long-term debris cooling process and is being addressed by Korean Maritime University in via test and analyses. We then address the appropriate scaling and design methodologies for reactor applications.

The authors analyze the decay B{sup 0} {yields} K{sub S}{sup 0}{pi}{sup +}{pi}{sup -} using a sample of 232 million {Upsilon}(4S) {yields} B{bar B} decays collected with the BABAR detector at the SLAC PEP-II asymmetric-energy B factory. A maximum likelihood fit finds the following branching fractions: {Beta}(B{sup 0} {yields} K{sup 0}{pi}{sup +}{pi}{sup -}) = (43.0 {+-} 2.3 {+-} 2.3) x 10{sup -6}, {Beta}(B{sup 0} {yields} f{sub 0}({yields} {pi}{sup +}{pi}{sup -})K{sup 0}) = (5.5 {+-} 0.7 {+-} 0.5 {+-} 0.3) x 10{sup -6} and {Beta}(B{sup 0} {yields} K*{sup +}{pi}{sup -}) = (11.0 {+-} 1.5 {+-} 0.5 {+-} 0.5) x 10{sup -6}. For these results, the first uncertainty is statistical, the second is systematic, and the third (if present) is due to the effect of interference from other resonances. They also measure the CP-violating charge asymmetry in the decay B{sup 0} {yields} K*{sup +}{pi}{sup -}, {Alpha}{sub K*{pi}} = -0.11 {+-} 0.14 {+-} 0.05.

The authors report preliminary measurements of the charmless exclusive semileptonic branching fractions of the B{sup 0} {yields} {pi}{sup -}{ell}{sup +}{nu} and B{sup +} {yields} {pi}{sup 0}{ell}{sup +}{nu} decays, based on 211 fb{sup -1} of data collected at the {Upsilon}(4S) resonance by the BABAR detector. In events in which the decay of one B meson to a hadronic final state is fully reconstructed, the semileptonic decay of the second B meson is identified by the detection of a charged lepton and a pion. They measure the partial branching fractions for B{sup 0} {yields} {pi}{sup -}{ell}{sup +}{nu} and B{sup +} {yields} {pi}{sup 0}{ell}{sup +}{nu} in three regions of the invariant mass squared of the lepton pair, and they obtain the total branching fractions {Beta}(B{sup 0} {yields} {pi}{sup -}{ell}{sup +}{nu}) = (1.14 {+-} 0.27{sub stat} {+-} 0.17{sub syst}) x 10{sup -4} and {Beta}(B{sup +} {yields} {pi}{sup 0}{ell}{sup +}{nu}) = (0.86 {+-} 0.22{sub stat} {+-} 0.11{sub syst}) x 10{sup -4}. Using isospin symmetry, they measure the combined total branching fraction {Beta}(B{sup 0} {yields} {pi}{sup -}{ell}{sup +}{nu}) = (1.28 {+-} 0.23{sub stat} {+-} 0.16{sub syst}) x 10{sup -4}. Theoretical predictions of the form-factor are used to determine the magnitude of the Cabibbo-Kobayashi-Maskawa matrix element |V{sub …

Using 88.9 million B{bar B} events collected by the BABAR detector at the {Upsilon}(4S), they measure the branching fraction for the radiative penguin process B {yields} X{sub s}{gamma} from the sum of 38 exclusive final states. The inclusive branching fraction above a minimum photon energy E{sub {gamma}} > 1.9 GeV is {Beta}(b {yields} s{gamma}) = (3.27 {+-} 0.18(stat.){sub -0.40}{sup +0.55}(syst.){sub -0.09}{sup +0.04}(theory)) x 10{sup -4}. They also measure the isospin asymmetry between B{sup -} {yields} X{sub s{bar u}}{gamma} and {bar B}{sup 0} {yields} X{sub sd}{gamma} to be {Delta}{sub 0-} = -0.006 {+-} 0.058(stat.) {+-} 0.009(syst.) {+-} 0.024({bar B}{sup 0}/B{sup -}). The photon energy spectrum is measured in the B rest frame, from which moments are derived for different values of the minimum photon energy. They present fits to the photon spectrum and moments which give the heavy-quark parameters m{sub b} and {mu}{sub {pi}}{sup 2}. The fitted parameters are consistent with those obtained from semileptonic B {yields} X{sub c}{ell}{nu} decays, and are useful inputs for the extraction of |V{sub ub}| from measurements of semileptonic B {yields} X{sub u}{ell}{nu} decays.

A search for the non-conservation of lepton flavor in the decay {tau}{sup {+-}} {yields} e{sup {+-}}{gamma} has been performed with 2.07 x 10{sup 8} e{sup +}e{sup -} {yields} {tau}{sup +}{tau}{sup -} events collected by the BABAR detector at the PEP-II storage ring at a center-of-mass energy near 10.58 GeV. They find no evidence for a signal and set an upper limit on the branching ratio of {Beta}({tau}{sup {+-}} {yields} e{sup {+-}}{gamma}) < 1.1 x 10{sup -7} at 90% confidence level.

The authors report a search for the decays B{sup 0} {yields} D{sub s}{sup -}D{sub s}{sup +}, B{sup 0} {yields} D*{sub s}{sup -}D{sub s}{sup +} and B{sup 0} {yields} D*{sub s}{sup -}D*{sub s}{sup +} in a sample of 232 million {Upsilon}(4S) decays to B{bar B} pairs collected with the BABAR detector at the PEP-II asymmetric-energy e{sup +}e{sup -} storage ring. They find no significant signal and set upper bounds for the branching fractions: {Beta}(B{sup 0} {yields} D{sub s}{sup -}D{sub s}{sup +}) < 1.0 x 10{sup -4}, {Beta}(B{sup 0} {yields} D*{sub s}{sup -} D{sub s}{sup +}) < 1.3 x 10{sup -4} and {Beta}(B{sup 0} {yields} D*{sub s}{sup -} D*{sub s}{sup +}) < 2.4 x 10{sup -4} at 90% confidence level.

In laser beam alignment in addition to detecting position, one must also determine the rotation of the beam. This is essential when a commissioning new laser beam for National Ignition Facility located at the Lawrence Livermore National Laboratory. When the beam is square, the positions of the corners with respect to one another provides an estimate of the rotation of the beam. This work demonstrates corner detection in the presence or absence of a second order non-uniform illumination caused by a spatial mask. The Hough transform coupled with illumination dependent pre-processing is used to determine the corner points. We show examples from simulated and real NIF images.

The recent rise of ''computer-assisted'' and ''experimental'' mathematics raises intriguing questions as to the future role of computation in mathematics. These results also draw into question the traditional distinctions that have been drawn between formal proof and computationally-assisted proof. This article explores these questions in the context of the growing consensus among computer technologists that Moore's Law is likely to continue unabated for quite some time into the future, producing hardware and software much more powerful than what is available today.

We review recent research that assesses evidence for the detection of anthropogenic and natural external influences on the climate. Externally driven climate change has been detected by a number of investigators in independent data covering many parts of the climate system, including surface temperature on global and large regional scales, ocean-heat content, atmospheric circulation, and variables of the free atmosphere, such as atmospheric temperature and tropopause height. The influence of external forcing is also clearly discernible in reconstructions of hemispheric scale temperature of the last millennium. These observed climate changes are very unlikely to be due only to natural internal climate variability, and they are consistent with the responses to anthropogenic and natural external forcing of the climate system that are simulated with climate models. The evidence indicates that natural drivers such as solar variability and volcanic activity are at most partially responsible for the large-scale temperature changes observed over the past century, and that a large fraction of the warming over the last 50 years can be attributed to greenhouse gas increases. Thus the recent research supports and strengthens the IPCC Third Assessment Report conclusion that ''most of the global warming over the past 50 years is likely due …

Many particle accelerator applications can benefit from online pulse-by-pulse nonintercepting emittance measurement system. Recently, there has been much interest in performing such a measurement with a set of resonant quadrupole-mode cavities. This article explores a geometry to achieve an enhanced shunt impedance in such a cavity by adding a set of posts forming capacitive gaps near the beam pipe outer radius. For typical diagnostic cavity applications, a five-fold increase in shunt impedance can be obtained with this method. The effect of errors in cavity fabrication on the required mode structure are explored.

Many carcinogens have been shown to cause tissue specific tumors in animal models. The mechanism for this specificity has not been fully elucidated and is usually attributed to differences in organ metabolism. For heterocyclic amines, potent carcinogens that are formed in well-done meat, the ability to either bind to the estrogen receptor and activate or inhibit an estrogenic response will have a major impact on carcinogenicity. Here we describe our work with the human estrogen receptor alpha (hERa) and the mutagenic/carcinogenic heterocyclic amines PhIP, MeIQx, IFP, and the hydroxylated metabolite of PhIP, N2-hydroxy-PhIP. We found that PhIP, in contrast to the other heterocyclic amines, increased cell-proliferation in MCF-7 human breast cancer cells and activated the hERa receptor. We show mechanistic data supporting this activation both computationally by homology modeling and docking, and by NMR confirmation that PhIP binds with the ligand binding domain (LBD). This binding competes with estradiol (E2) in the native E2 binding cavity of the receptor. We also find that other heterocyclic amines and N2-hydroxy-PhIP inhibit ER activation presumably by binding into another cavity on the LBD. Moreover, molecular dynamics simulations of inhibitory heterocyclic amines reveal a disruption of the surface of the receptor protein involved with …

UmuD{sub 2} cleaves and removes its N-terminal 24 amino acids to form UmuD'{sub 2}, which activates UmuC for its role in UV-induced mutagenesis in E. coli. Cells with a non-cleavable UmuD exhibit essentially no UV-induced mutagenesis and are hypersensitive to killing by UV light. UmuD has been shown to bind to the beta processivity clamp (''beta'') of the replicative DNA polymerase, pol III. A possible beta-binding motif has been predicted in the same region of UmuD shown to be important for its interaction with beta. We performed alanine-scanning mutagenesis of this motif (14-TFPLF-18) in UmuD and showed that it has a moderate influence on UV-induced mutagenesis but is required for the cold sensitive phenotype caused by elevated levels of wild-type UmuD and UmuC. Surprisingly, the wild-type and the beta-binding motif variant bind to beta with similar K{sub d} values as determined by changes in tryptophan fluorescence. However, this data also implies that the single tryptophan in beta is in strikingly different environments in the presence of the wild-type versus the variant UmuD proteins, suggesting a distinct change in some aspect of the interaction with little change in its strength. Despite the fact that this novel UmuD variant is noncleavable, we …

The systems approach to genomics seeks quantitative and predictive descriptions of cells and organisms. However, both the theoretical and experimental methods necessary for such studies still need to be developed. We are far from understanding even the simplest collective behavior of biomolecules, cells or organisms. A key aspect to all biological problems, including environmental microbiology, evolution of infectious diseases, and the adaptation of cancer cells is the evolvability of genomes. This is particularly important for Genomes to Life missions, which tend to focus on the prospect of engineering microorganisms to achieve desired goals in environmental remediation and climate change mitigation, and energy production. All of these will require quantitative tools for understanding the evolvability of organisms. Laboratory biodefense goals will need quantitative tools for predicting complicated host-pathogen interactions and finding counter-measures. In this project, we seek to develop methods to simulate how external and internal signals cause the genetic apparatus to adapt and organize to produce complex biochemical systems to achieve survival. This project is specifically directed toward building a computational methodology for simulating the adaptability of genomes. This project investigated the feasibility of using a novel quantitative approach to studying the adaptability of genomes and biochemical pathways. This effort …

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Microbial degradation of chlorinated ethenes (CE) in rhizosphere soils was investigated at seepline areas impacted by CE plumes. Successful bioremediation of CE in rhizosphere soils is dependent on microbial activity, soil types, plant species, and groundwater CE concentrations. Seepline soils were exposed to trichloroethylene (TCE) and perchloroethylene (PCE) in the 10-50 ppb range. Greenhouse soils were exposed to 2-10 ppm TCE. Plants at the seepline were poplar and pine while the greenhouse contained sweet gum, willow, pine, and poplar. Phospholipid fatty acid (PLFA) analyses were performed to assess the microbial activity in rhizosphere soils. Biomass content was lowest in the nonvegetated control soil and highest in the Sweet Gum soil. Bacterial rhizhosphere densities, as measured by PLFA, were similar in different vegetated soils while fungi biomass was highly variable. The PLFA soil profiles showed diverse microbial communities primarily composed of Gram-negative bacteria. Adaptation of the microbial community to CE was determined by the ratio of {omega}7t/{omega}7c fatty acids. Ratios (16:1{omega}7v16:1{omega}7c and 18:l{omega}7t/18:1{omega}7c) greater than 0.1 were demonstrated in soils exposed to higher CE concentrations (10-50 ppm), indicating an adaptation to CE resulting in decreased membrane permeability. Ratios of cyclopropyl fatty acids showed that the vegetated control soil sample contained the …

We analyze the scaling properties of inclusive hadron production in proton-proton and in heavy ion collisions from fixed target to collider energies. At large transverse momentum p{sub T}, the invariant cross section exhibits a power-like behavior Ed{sup 3}{sigma}/d{sup 3}p {proportional_to} p{sub T}{sup -n} at fixed transverse x, x{sub T} = 2|{bar p}{sub T}|/{radical}s, and fixed center-of-mass scattering angle {theta}{sub cm}. Knowledge of the exponent n allows one to draw conclusions about the production mechanisms of hadrons, which are poorly known, even at high p{sub T}. We find that high-p{sub T} hadrons are produced by different mechanisms at fixed-target and collider energies. For pions, higher-twist subprocesses where the pion is produced directly dominate at fixed target energy, while leading-twist partonic scattering plus fragmentation is the most important mechanism at collider energies. High-p{sub T} baryons on the other hand appear to be produced by higher-twist mechanisms at all available energies. The higher-twist mechanism of direct proton production can be verified experimentally by testing whether high p{sub T} protons are produced as single hadrons without accompanying secondaries. In addition, we find that medium-induced gluon radiation in heavy ion collisions can violate scaling.

The light-front quantization of gauge theories in light-cone gauge provides a frame-independent wavefunction representation of relativistic bound states, simple forms for current matrix elements, explicit unitarity, and a Fock space built on a trivial vacuum. The AdS/CFT correspondence has led to important insights into the properties of quantum chromodynamics even though QCD is a broken conformal theory. We have recently shown how a model based on a truncated AdS space can be used to obtain the hadronic spectrum of q{bar q}, qqq and gg bound states, as well as their respective light-front wavefunctions. Specific hadrons are identified by the correspondence of string modes with the dimension of the interpolating operator of the hadron's valence Fock state, including orbital angular momentum excitations. The predicted mass spectrum is linear M {proportional_to} L at high orbital angular momentum, in contrast to the quadratic dependence M{sup 2}/L found in the description of spinning strings. Since only one parameter, the QCD scale {Lambda}{sub QCD}, is introduced, the agreement with the pattern of physical states is remarkable. In particular, the ratio of {Delta} to nucleon trajectories is determined by the ratio of zeros of Bessel functions. As a specific application of QCD dynamics from AdS/CFT duality, …

The purpose of this report is to evaluate the potential for penetration of the Alloy 22 (UNS N06022) waste package outer barrier by localized corrosion due to the deliquescence of soluble constituents in dust present on waste package surfaces. The results support a recommendation to exclude deliquescence-induced localized corrosion (pitting or crevice corrosion) of the outer barrier from the total system performance assessment for the license application (TSPA-LA). Preparation of this report, and supporting laboratory studies and calculations, were performed as part of the planned effort in Work Package AEBM21, as implemented in ''Technical Work Plan for: Screening Evaluation for Dust Deliquescence and Localized Corrosion'' (BSC 2004 [DIRS 172804]), by Bechtel SAIC Company, LLC, and staff from three national laboratories: Sandia National Laboratories, Lawrence Livermore National Laboratory (LLNL), and Lawrence Berkeley National Laboratory (LBNL). The analysis and conclusions presented in this report are quality affecting, as determined in the controlling technical work plan. A summary of background information, based on work that was not performed under a quality assurance program, is provided as Appendix E. In this instance, the use of unqualified information is provided for transparency and corroboration only, and is clearly separated from uses of qualified information. Thus, …

Recent BABAR results on electroweak penguin and leptonic decays are reviewed. In particular, the measurements of B {yields} K{sup (*)}l{sup +}l{sup -} and the preliminary results on B {yields} X{sub s}l{sup +}l{sup -} are presented. Also summarized are the preliminary limits on B{sup +} {yields} l{sup +}{nu} (l = e,{mu}) and B{sup +} {yields} K{sup +}{nu}{bar {nu}}.

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This project was initially targeted to the making of coke for blast furnaces by using proprietary technology of Calderon in a phased approach, and Phase I was successfully completed. The project was then re-directed to the making of iron units. In 2000, U.S. Steel teamed up with Calderon for a joint effort which will last 42 months to produce directly reduced iron with the potential of converting it into molten iron or steel consistent with the Roadmap recommendations of 1998 prepared by the Steel Industry in cooperation with the Department of Energy by using iron ore concentrate and coal as raw materials, both materials being appreciably lower in cost than using iron pellets and coke.

This cleanup verification package documents completion of remedial action for the 300-18 waste site. This site was identified as containing radiologically contaminated soil, metal shavings, nuts, bolts, and concrete.