Over the fifty-five year history of Nuclear Magnetic Resonance (NMR), considerable progress has been made in the development of techniques for studying the structure, function, and dynamics of biological molecules. The majority of this research has involved the development of multi-dimensional NMR experiments for studying molecules in solution, although in recent years a number of groups have begun to explore NMR methods for studying biological systems in the solid-state. Despite this new effort, a need still exists for the development of techniques that improve sensitivity, maximize information, and take advantage of all the NMR interactions available in biological molecules. In this dissertation, a variety of novel NMR techniques for studying biomolecules are discussed. A method for determining backbone ({phi}/{psi}) dihedral angles by comparing experimentally determined {sup 13}C{sub a}, chemical-shift anisotropies with theoretical calculations is presented, along with a brief description of the theory behind chemical-shift computation in proteins and peptides. The utility of the Spin-Polarization Induced Nuclear Overhauser Effect (SPINOE) to selectively enhance NMR signals in solution is examined in a variety of systems, as are methods for extracting structural information from cross-relaxation rates that can be measured in SPINOE experiments. Techniques for the production of supercritical and liquid laser-polarized …

Groundwater irrigation is critical to food production and, in turn, to humankind's relationship with its environment. The development of groundwater in Santa Clara Valley, California during the early twentieth century is instructive because (1) responses to unsustainable resource use were largely successful; (2) the proposals for the physical management of the water, although not entirely novel, incorporated new approaches which reveal an evolving relationship between humans and the hydrologic cycle; and (3) the valley serves as a natural laboratory where natural (groundwater basin, surface watershed) and human (county, water district) boundaries generally coincide. Here, I investigate how water resources development and management in Santa Clara Valley was influenced by, and reflective of, a broad understanding of water as a natural resource, including scientific and technological innovations, new management approaches, and changing perceptions of the hydrologic cycle. Market demands and technological advances engendered reliance on groundwater. This, coupled with a series of dry years and laissez faire government policies, led to overdraft. Faith in centralized management and objective engineering offered a solution to concerns over resource depletion, and a group dominated by orchardists soon organized, fought for a water conservation district, and funded an investigation to halt the decline of well …

The first proposal for plasma based accelerators was suggested by 1979 by Tajima and Dawson. Since then there has been a tremendous progress both theoretically and experimentally. The theoretical progress is particularly due to the growing interest in the subject and to the development of more accurate numerical codes for the plasma simulations (especially particle-in-cell codes). The experimental progress follows from the development of multi-terawatt laser systems based on the chirped-pulse amplification technique. These efforts have produced results in several experiments world-wide, with the detection of accelerated electrons of tens of MeV. The peculiarity of these advanced accelerators is their ability to sustain extremely large acceleration gradients. In the conventional radio frequency linear accelerators (RF linacs) the acceleration gradients are limited roughly to 100 MV/m; this is partially due to breakdown which occurs on the walls of the structure. The electrical breakdown is originated by the emission of the electrons from the walls of the cavity. The electrons cause an avalanche breakdown when they reach other metal parts of the RF linacs structure.

This dissertation develops diverse research on small (diameter {approx} few mm), high current density (J {approx} several tens of mA/cm{sup 2}) heavy ion sources. The research has been developed in the context of a programmatic interest within the Heavy Ion Fusion (HIF) Program to explore alternative architectures in the beam injection systems that use the merging of small, bright beams. An ion gun was designed and built for these experiments. Results of average current density yield (<J>) at different operating conditions are presented for K{sup +} and Cs{sup +} contact ionization sources and potassium aluminum silicate sources. Maximum <J> values for a K{sup +} beam of {approx}90 mA/cm{sup 2} were observed in 2.3 {micro}s pulses. Measurements of beam intensity profiles and emittances are included. Measurements of neutral particle desorption are presented at different operating conditions which lead to a better understanding of the underlying atomic diffusion processes that determine the lifetime of the emitter. Estimates of diffusion times consistent with measurements are presented, as well as estimates of maximum repetition rates achievable. Diverse studies performed on the composition and preparation of alkali aluminosilicate ion sources are also presented. In addition, this work includes preliminary work carried out exploring the viability …

Trapped radioactive atoms are an appealing source for precise measurements of the beta-neutrino correlation coefficient, a, since the momentum of the neutrino can be inferred from the detection of the unperturbed low-energy recoil daughter nucleus. Sodium-21 is produced on-line at the 88'' cyclotron at Lawrence Berkeley National Laboratory, and 8e5 atoms have been maintained in a magneto-optical trap. A static electric field draws daughter Neon-21 ions to a microchannel plate detector and betas are detected in coincidence with a plastic scintillator beta detector. The Neon-21 time-of-flight distribution determines the beta neutrino correlation coefficient, a. The resulting charge-state distribution is compared to a simple model based on the sudden approximation which suggests a small but important contribution from nuclear recoil-induced ionization. A larger than expected fraction of the daughters are detected in positive charge-states, but no dependence on either the beta or recoil nucleus energy was observed. We find a = 0.5243 plus or minus 0.0092, which is in 3.6 sigma disagreement with the Standard Model prediction of a = 0.559 plus or minus 0.003. Aside from a deviation from the Standard Model, a possible explanation for the discrepancy is that the branching ratio to the first excited state is in …

A novel new approach to retrieve cloud microphysical properties from mixed-phase clouds is presented. This algorithm retrieves cloud optical depth, ice fraction, and the effective size of the water and ice particles from ground-based, high-resolution infrared radiance observations. The theoretical basis is that the absorption coefficient of ice is stronger than that of liquid water from 10-13 mm, whereas liquid water is more absorbing than ice from 16-25 um. However, due to strong absorption in the rotational water vapor absorption band, the 16-25 um spectral region becomes opaque for significant water vapor burdens (i.e., for precipitable water vapor amounts over approximately 1 cm). The Arctic is characterized by its dry and cold atmosphere, as well as a preponderance of mixed-phase clouds, and thus this approach is applicable to Arctic clouds. Since this approach uses infrared observations, cloud properties are retrieved at night and during the long polar wintertime period. The analysis of the cloud properties retrieved during a 7 month period during the Surface Heat Budget of the Arctic (SHEBA) experiment demonstrates many interesting features. These results show a dependence of the optical depth on cloud phase, differences in the mode radius of the water droplets in liquid-only and mid-phase …

A parallel algorithm is developed for contact/impact of multiple three dimensional bodies undergoing large deformation. As time progresses the relative positions of contact between the multiple bodies changes as collision and sliding occurs. The parallel algorithm is capable of tracking these changes and enforcing an impenetrability constraint and momentum transfer across the surfaces in contact. Portions of the various surfaces of the bodies are assigned to the processors of a distributed-memory parallel machine in an arbitrary fashion, known as the primary decomposition. A secondary, dynamic decomposition is utilized to bring opposing sections of the contacting surfaces together on the same processors, so that opposing forces may be balanced and the resultant deformation of the bodies calculated. The secondary decomposition is accomplished and updated using only local communication with a limited subset of neighbor processors. Each processor represents both a domain of the primary decomposition and a domain of the secondary, or contact, decomposition. Thus each processor has four sets of neighbor processors: (a) those processors which represent regions adjacent to it in the primary decomposition, (b) those processors which represent regions adjacent to it in the contact decomposition, (c) those processors which send it the data from which it constructs …

Two main issues regarding the disposal of spent nuclear fuel from nuclear reactors in the United States in the geological repository Yucca Mountain are: (1) Yucca Mountain is not designed to hold the amount of fuel that has been and is proposed to be generated in the next few decades, and (2) the radiotoxicity (i.e., biological hazard) of the waste (particularly the actinides) does not decrease below that of natural uranium ore for hundreds of thousands of years. One solution to these problems may be to use transmutation to convert the nuclides in spent nuclear fuel to ones with shorter half-lives. Both reactor and accelerator-based systems have been examined in the past for transmutation; there are advantages and disadvantages associated with each. By using existing Light Water Reactors (LWRs) to burn a majority of the plutonium in spent nuclear fuel and Accelerator-Driven Systems (ADSs) to transmute the remainder of the actinides, the benefits of each type of system can be realized. The transmutation process then becomes more efficient and less expensive. This research searched for the best combination of LWRs with multiple recycling of plutonium and ADSs to transmute spent nuclear fuel from past and projected nuclear activities (assuming little …

The Cryogenic Dark Matter Search (CDMS) experiment is designed to search for dark matter in the form of the Weakly Interacting Massive Particles (WIMPs). For this purpose, CDMS uses detectors based on crystals of Ge and Si, operated at the temperature of 20 mK, and providing a two-fold signature of an interaction: the ionization and the athermal phonon signals. The two signals, along with the passive and active shielding of the experimental setup, and with the underground experimental sites, allow very effective suppression and rejection of different types of backgrounds. This dissertation presents the commissioning and the results of the first WIMP-search run performed by the CDMS collaboration at the deep underground site at the Soudan mine in Minnesota. We develop different methods of suppressing the dominant background due to the electron-recoil events taking place at the detector surface and we apply these algorithms to the data set. These results place the world's most sensitive limits on the WIMP-nucleon spin-independent elastic-scattering cross-section. Finally, they examine the compatibility of the supersymmetric WIMP-models with the direct-detection experiments (such as CDMS) and discuss the implications of the new CDMS result on these models.

The Higgs mechanism preserves the gauge symmetries of the Standard Model while giving masses to the W, Z bosons. Supersymmetry, which protects the Higgs boson mass scale from quantum corrections, predicts at least 5 Higgs bosons, none of which has been directly observed. This thesis presents a search for neutral Higgs bosons, produced in association with bottom quarks. The production rate is greatly enhanced at large values of the Supersymmetric parameter tan {beta}. High-energy p{bar p} collision data, collected from Run II of the Fermilab Tevatron using the D0 detector, are analyzed. In the absence of a signal, values of tan {beta} > 80-120 are excluded at 95% Confidence Level (C.L.), depending on the (CP-odd) neutral Higgs boson mass (studied from 100 to 150 GeV/c{sup 2}).

Abstract: The study of superallowed beta decay in nuclei, in conjunction with other experiments, provide a test of the unitarity of the quark mixing matrix or CKM matrix. Nonunitarity of the CKM matrix could imply the existence of a fourth generation of quarks, right handed currents in the weak interaction, and/or new exotic fermions. Advances in radioactive beam techniques allow the creation of nearly pure samples of nuclei for beta decay studies. The subject of this thesis is the development of a radioactive beam of 14O and the study of the 14O halflife and branching ratio. The radioactive beam is produced by ionizing 12C14O radioactive gas and then accelerating with an ECR ion source. The 14O nucleus decays via superallowed beta decay with a branching ratio > 99 percent. The low Z of 14O is important for calculating reliable corrections to the beta decay that generally increase in with Z. The > 99 percent branching ratio can be established with modest precision on the complementary branching ratio.When this work began the experimentally determined CKM matrix was nonunitary by 2.5 standard deviations. Recent studies of Kaon, Hyperon, and B meson decays have been used to determine Vus and Vub matrix elements. …

Measurements of the b quark production cross section at the Tevatron and at Hera in the final decades of the 20th century have consistently yielded higher values than predicted by Next-to-Leading Order (NLO) QCD. This discrepancy has led to a large efforts by theorists to improve theoretical calculations of the cross sections and simulations of b quark production. As a result, the difference between theory and experiment has been much reduced. New measurements are needed to test the developments in the calculations and in event simulation. In this thesis, a measurement of angular correlations between b jets produced in the same event is presented. The angular separation between two b jets is directly sensitive to higher order contributions. In addition, the measurement does not depend strongly on fragmentation models or on the experimental luminosity and efficiency, which lead to a large uncertainty in measurements of the inclusive cross section. At the Tevatron, b{bar b} quark pairs are predominantly produced through the strong interaction. In leading order QCD, the b quarks are produced back to back in phase space. Next-to-leading order contributions involving a third particle in the final state allow production of b pairs that are very close together in …

In the absence of external forces, if the dynamics within an electron beam is dominated by its angular momentum rather than other effects such as random thermal motion or self Coulomb-repulsive force (i.e., space-charge force), the beam is said to be angular-momentum-dominated. Such a beam can be directly applied to the field of electron-cooling of heavy ions; or it can be manipulated into an electron beam with large transverse emittance ratio, i.e., a flat beam. A flat beam is of interest for high-energy electron-positron colliders or accelerator-based light sources. An angular-momentum-dominated beam is generated at the Fermilab/NICADD photoinjector Laboratory (FNPL) and is accelerated to an energy of 16 MeV. The properties of such a beam is investigated systematically in experiment. The experimental results are in very good agreement with analytical expectations and simulation results. This lays a good foundation for the transformation of an angular-momentum-dominated beam into a flat beam. The round-to-flat beam transformer is composed of three skew quadrupoles. Based on a good knowledge of the angular-momentum-dominated beam, the quadrupoles are set to the proper strengths in order to apply a total torque which removes the angular momentum, resulting in a flat beam. For bunch charge around 0.5 nC, …

Dielectric reflectors that are periodic in one or two dimensions, also known as 1D and 2D photonic crystals, have been widely studied for many potential applications due to the presence of wavelength-tunable photonic bandgaps. However, the unique optical behavior of photonic crystals is based on theoretical models of perfect analogues. Little is known about the practical effects of dielectric imperfections on their technologically useful optical properties. In order to address this issue, a finite-difference time-domain (FDTD) code is employed to study the effect of three specific dielectric imperfections in 1D and 2D photonic crystals. The first imperfection investigated is dielectric interfacial roughness in quarter-wave tuned 1D photonic crystals at normal incidence. This study reveals that the reflectivity of some roughened photonic crystal configurations can change up to 50% at the center of the bandgap for RMS roughness values around 20% of the characteristic periodicity of the crystal. However, this reflectivity change can be mitigated by increasing the index contrast and/or the number of bilayers in the crystal. In order to explain these results, the homogenization approximation, which is usually applied to single rough surfaces, is applied to the quarter-wave stacks. The results of the homogenization approximation match the FDTD results …

MINOS is a long-baseline neutrino oscillation experiment. A neutrino beam is created at the Fermi National Accelerator Laboratory in Illinois and fired down through the Earth. Measurements of the energy spectra and composition of the neutrino beam are made both at the source using the Near detector and 735 km away at the Soudan Underground Laboratory in Minnesota using the Far detector. By comparing the spectrum and flavour composition of the neutrino beam between the two detectors neutrino oscillations can be observed. Such a comparison depends on the accuracy of the relative calorimetric energy scale. This thesis details a precise measurement of the calorimetric energy scale of the MINOS Far detector and Calibration detector using stopping muons with a new ''track window'' technique. These measurements are used to perform the relative calibration between the two detectors. This calibration has been accomplished to 1.7% in data and to significantly better than 2% in the Monte Carlo simulation, thus achieving the MINOS relative calibration target of 2%. A number of cross-checks have been performed to ensure the robustness of the calorimetric energy scale measurements. At the Calibration detector the test-beam energy between run periods is found to be consistent with the detector …

The author presents a measurement of the dipion mass spectrum in the decay X(3872) {yields} J/{psi}{pi}{sup +}{pi}{sup -} using a 360 pb{sup -1} sample of p{bar p} collisions at {radical}s = 1.96 TeV collected with the CDF II detector at the Fermilab Tevatron Collider. As a benchmark, they also extract the dipion mass distribution for {psi}(2S) {yields} J/{psi}{pi}{sup +}{pi}{sup -} decay. The X(3872) dipion mass spectrum is compared to QCD multipole expansion predictions for various charmonium states, as well as to the hypothesis X(3872) {yields} J/{psi}{rho}{sup 0}. They find that the measured spectrum is compatible with {sup 3}S{sub 1} charmonium decaying to J/{psi}{pi}{sup +}{pi}{sup -} and with the X(3872) {yields} J/{psi}{rho}{sup 0} hypothesis. There is, however, no {sup 3}S{sub 1} charmonium state available for assignment to the X(3872). The multipole expansion calculations for {sup 1}P{sub 1} and {sup 3}D{sub J} states are in clear disagreement with the X(3872) data. For the {psi}(2S) the data agrees well with previously published results and to multipole expansion calculations for {sup 3}S{sub 1} charmonium. Other, non-charmonium, models for the X(3872) are described too. They conclude that since the dipion mass spectrum for X(3872) is compatible with J/{psi}{rho}{sup 0} hypothesis, the X(3872) should be C-positive. …

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An RDD attack against the U.S. is something America needs to prepare against. If such an event occurs the ability to quickly identify the source of the radiological material used in an RDD would aid investigators in identifying the perpetrators. Spent fuel is one of the most dangerous possible radiological sources for an RDD. In this work, a forensics methodology was developed and implemented to attribute spent fuel to a source reactor. The specific attributes determined are the spent fuel burnup, age from discharge, reactor type, and initial fuel enrichment. It is shown that by analyzing the post-event material, these attributes can be determined with enough accuracy to be useful for investigators. The burnup can be found within a 5% accuracy, enrichment with a 2% accuracy, and age with a 10% accuracy. Reactor type can be determined if specific nuclides are measured. The methodology developed was implemented into a code call NEMASYS. NEMASYS is easy to use and it takes a minimum amount of time to learn its basic functions. It will process data within a few minutes and provide detailed information about the results and conclusions.

This research examined the relationship between sediment sample data taken at Potential Release Sites (PRSs) and storm water samples taken at selected sites in and around Los Alamos National Laboratory (LANL). The PRSs had been evaluated for erosion potential and a matrix scoring system implemented. It was assumed that there would be a stronger relationship between the high erosion PRSs and the storm water samples. To establish the relationship, the research was broken into two areas. The first area was raster-based modeling, and the second area was data analysis utilizing the raster based modeling results and the sediment and storm water sample results. Two geodatabases were created utilizing raster modeling functions and the Arc Hydro program. The geodatabase created using only Arc Hydro functions contains very fine catchment drainage areas in association with the geometric network and can be used for future contaminant tracking. The second geodatabase contains sub-watersheds for all storm water stations used in the study along with a geometric network. The second area of the study focused on data analysis. The analytical sediment data table was joined to the PRSs spatial data in ArcMap. All PRSs and PRSs with high erosion potential were joined separately to create …

We present results on a search for a heavy charged vector boson, W', decaying to an electron-neutrino pair in p{bar p} collisions at {radical}s = 1.96 TeV using a data sample corresponding to an integrated luminosity of 205 pb{sup -1}. We found no evidence of this decay channel, and set 95% confidence level limits on the production cross section times branching fraction assuming the light neutrino. We also set the limit on the W' boson mass at M{sub W'} > 788 GeV/c{sup 2}, assuming the standard model strength couplings.

In this thesis two searches for electroweak single top quark production with the CDF experiment have been presented, a cutbased search and an iterated discriminant analysis. Both searches find no significant evidence for electroweak single top production using a data set corresponding to an integrated luminosity of 162 pb{sup -1} collected with CDF. Therefore limits on s- and t-channel single top production are determined using a likelihood technique. For the cutbased search a likelihood function based on lepton charge times pseudorapidity of the non-bottom jet was used if exactly one bottom jet was identified in the event. In case of two identified bottom jets a likelihood function based on the total number of observed events was used. The systematic uncertainties have been treated in a Bayesian approach, all sources of systematic uncertainties have been integrated out. An improved signal modeling using the MadEvent Monte Carlo program matched to NLO calculations has been used. The obtained limits for the s- and t-channel single top production cross sections are 13.6 pb and 10.1 pb, respectively. To date, these are most stringent limits published for the s- and the t-channel single top quark production modes.

A search for associated chargino neutralino pair production is performed in the trilepton decay channel q{bar q} {yields} {tilde {chi}}{sub 1}{sup {+-}} {tilde {chi}}{sub 2}{sup 0} {yields} {ell}{sup {+-}} {nu} {tilde {chi}}{sub 1}{sup 0} {mu}{sup {+-}} {mu}{sup {-+}} {tilde {chi}}{sub 1}{sup 0}, using data collected with the D0 detector at a center-of-mass energy of 1.96 TeV at the Fermilab Tevatron Collider. The data sample corresponds to an integrated luminosity of {approx}300 pb{sup -1}. A dedicated event selection is applied to all samples including the data sample and the Monte Carlo simulated samples for the Standard Model background and the Supersymmetry signal. Events with two muons plus an additional isolated track, replacing the requirement of a third charged lepton in the event, are analyzed. Additionally, selected events must have a large amount of missing transverse energy due to the neutrino and the two {tilde {chi}}{sub 1}{sup 0}. After all selection cuts are applied, 2 data events are found, with an expected number of background events of 1.75 {+-} 0.34 (stat.) {+-} 0.46 (syst.). No evidence for Supersymmetry is found and limits on the production cross section times leptonic branching fraction are set. When the presented analysis is considered in combination with …

Modern sky surveys, such as the Sloan Digital Sky Survey (SDSS) and the Two-Micron All Sky Survey, have revolutionized how Astronomy is done. With millions of photometric and spectroscopic observations, global observational properties can be studied with unprecedented statistical significance. Low-mass stars dominate the local Milky Way, with tens of millions observed by SDSS within a few kpc. Thus, they make ideal tracers of the Galactic potential, and the thin and thick disks. In this thesis dissertation, I present my efforts to characterize the local low-mass stellar population, using a collection of observations from the Sloan Digital Sky Survey (SDSS). First, low-mass stellar template spectra were constructed from the co-addition of thousands of SDSS spectroscopic observations. These template spectra were used to quantify the observable changes introduced by chromospheric activity and metallicity. Furthermore, the average ugriz colors were measured as a function of spectral type. Next, the local kinematic structure of the Milky Way was quantified, using a special set of SDSS spectroscopic observations. Combining proper motions and radial velocities (measured using the spectral templates), along with distances, the full UVW space motions of over 7000 low-mass stars along one line of sight were computed. These stars were also separated …

This thesis describes the first Run II measurement of b quark fragmentation into {bar B}{sup 0}, B{sup -}, and {bar B}{sub s}{sup 0} mesons and {Lambda}{sub b}{sup 0} baryons using semileptonic B decays. The result is based on 360 pb{sup -1} of data collected with the CDF detector in p{bar p} collisions at {radical}s = 1,960 GeV at the Tevatron Collider at Fermilab. The fragmentation fractions are measured for an effective {bar B} hadron p{sub T} threshold of 7 GeV/c to be f{sub u}/f{sub d} = 1.054 {+-} 0.018(stat){sub -0.045}{sup +0.025}(syst) {+-} 0.058(BR), f{sub s}/(f{sub u} + f{sub d}) = 0.160 {+-} 0.005(stat){sub -0.010}{sup +0.011}(syst){sub -0.034}{sup +0.057}(BR), and f{sub {Lambda}{sub b}}/(f{sub u} + f{sub d}) = 0.281 {+-} 0.012(stat){sub -0.056}{sup +0.058}(syst){sub -0.086}{sup +0.128}(BR). f{sub s}/(f{sub u} + f{sub d}) agrees both with previous CDF measurements and the world averages, dominated by the LEP measurements, with {approx} 1{sigma}. However, f{sub {Lambda}{sub b}}/(f{sub u} + f{sub d}) is approximately twice the value which has been measured at LEP and in CDF Run I and disagrees with the LEP results by approximately 2 {sigma}.