MINOS, the Main Injector Neutrino Oscillation Search, is a long baseline neutrino oscillation experiment based at Fermilab National Accelerator Laboratory. The experiment uses a neutrino beam, which is measured 1 km downstream from its origin in the Near detector at Fermilab and then 735 km later in the Far detector at the Soudan mine. By comparing these two measurements, MINOS can attain a very high precision for parameters in the atmospheric sector of neutrino oscillations. In addition to precisely determining {Delta}m{sub 23}{sup 2} and {theta}{sub 23} through the disappearance of {nu}{sub {mu}}, MINOS is able to measure {nu}{sub {mu}} {yields} {nu}{sub sterile} by looking for a deficit in the number of neutral current interactions seen in the Far detector. In this thesis, we present the results of a search for sterile neutrinos in MINOS.

The authors present precision measurements of the direct CP violation parameter, Re({epsilon}{prime}/{epsilon}), the kaon parameters, {Delta}m and {tau}{sub S}, and the CPT tests, {phi}{sub {+-}} and {Delta}{phi}, in neutral kaon decays. These results are based on the full dataset collected by the KTeV experiment at Fermi National Accelerator Laboratory during 1996, 1997, and 1999. This dataset contains {approx} 15 million K {yields} {pi}{sup 0}{pi}{sup 0} decays and {approx} 69 million K {yields} {pi}{sup +}{pi}{sup -} decays. They describe significant improvements to the precision of these measurements relative to previous KTeV analyses. They find Re({epsilon}{prime}/{epsilon}) = [19.2 {+-} 1.1(stat) {+-} 1.8(syst)] x 10{sup -4}, {Delta}m = (5265 {+-} 10) x 10{sup 6} hs{sup -1}, and {tau}{sub S} = (89.62 {+-} 0.05) x 10{sup -12} s. They measure {phi}{sub {+-}} = (44.09 {+-} 1.00){sup o} and {Delta}{phi} = (0.29 {+-} 0.31){sup o}; these results are consistent with CPT symmetry.

The top quark was discovered in 1995 at the Fermilab National Accelerator Laboratory (Fermilab). One way to confirm if the observed top quark is really the top quark posited in the Standard Model (SM) is to measure its electric charge. In the Standard Model the top quark is the isospin partner of the bottom quark and is expected to have a charge of +2/3. However, an alternative 'exotic' model has been proposed with a fourth generation exotic quark that has the same characteristics, such as mass, as our observed top but with a charge of -4/3. This thesis presents the first CDF measurement of the top quark's charge via its decay products, a W boson and a bottom quark, using {approx} 1 fb{sup -1} of data. The data were collected by the CDF detector from proton anti-proton (p{bar p}) collisions at {radical}s = 1.96 TeV at Fermilab. We classify events depending on the charges of the bottom quark and associated W boson and count the number of events which appear 'SM-like' or 'exotic-like' with a SM-like event decaying as t {yields} W{sup +}b and an exotic event as t {yields} W{sup -}b. We find the p-value under the Standard Model …

Rapid solidification of novel mixed rare earth-iron-boron, MRE{sub 2}Fe{sub 14}B (MRE = Nd, Y, Dy; currently), magnet alloys via high pressure gas atomization (HPGA) have produced similar properties and structures as closely related alloys produced by melt spinning (MS) at low wheel speeds. Recent additions of titanium carbide and zirconium to the permanent magnet (PM) alloy design in HPGA powder (using He atomization gas) have made it possible to achieve highly refined microstructures with magnetic properties approaching melt spun particulate at cooling rates of 10{sup 5}-10{sup 6}K/s. By producing HPGA powders with the desirable qualities of melt spun ribbon, the need for crushing ribbon was eliminated in bonded magnet fabrication. The spherical geometry of HPGA powders is more ideal for processing of bonded permanent magnets since higher loading fractions can be obtained during compression and injection molding. This increased volume loading of spherical PM powder can be predicted to yield a higher maximum energy product (BH){sub max} for bonded magnets in high performance applications. Passivation of RE-containing powder is warranted for the large-scale manufacturing of bonded magnets in applications with increased temperature and exposure to humidity. Irreversible magnetic losses due to oxidation and corrosion of particulates is a known drawback …

MINOS (Main Injector Neutrino Oscillation Search), is a long baseline neutrino experiment designed to search for neutrino oscillations using two detectors at Fermi National Accelerator Laboratory, IL (Near Detector) and Soudan, MN (Far Detector). It will study {nu}{sub {mu}} {yields} {nu}{sub {tau}} oscillations and make a measurement on the oscillation parameters, {Delta}m{sub 23}{sup 2} and sin{sup 2} 2{theta}{sub 23}, via a {nu}{sub {mu}} beam made at Fermilab. Charge current neutrino interactions in the MINOS detectors are of three types: quasi-elastic scattering (QEL), resonance scattering (RES) and deep inelastic scattering (DIS). Of these, quasi-elastic scattering leaves the cleanest signal with just one {mu} and one proton in the final state, thus rendering the reconstruction of the neutrino energy more accurate. This thesis will outline a method to separate QEL events from the others in the two detectors and perform a calculation of {Delta}m{sub 23}{sup 2} and sin{sup 2} 2{theta}{sub 23} using those events. The period under consideration was May 2005 to February 2006. The number of observed quasi-elastic events with energies below 10 GeV was 29, where the expected number was 60 {+-} 3. A fit to the energy distribution of these events gives {Delta}m{sub 23}{sup 2} = 2.91{sub -0.53}{sup +0.49}(stat){sub …

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Transition metal silicides are being considered for future engine turbine components at temperatures up to 1600 C. Although significant improvement in high temperature strength, room temperature fracture toughness has been realized in the past decade, further improvement in oxidation resistance is needed. Oxidation mechanism of Ti{sub 5}Si{sub 3}-based alloys was investigated. Oxidation behavior of Ti{sub 5}Si{sub 3}-based alloy strongly depends on the atmosphere. Presence of Nitrogen alters the oxidation behavior of Ti{sub 5}Si{sub 3} by nucleation and growth of nitride subscale. Ti{sub 5}Si{sub 3.2} and Ti{sub 5}Si{sub 3}C{sub 0.5} alloys exhibited an excellent oxidation resistance in nitrogen bearing atmosphere due to limited dissolution of nitrogen and increased Si/Ti activity ratio. MoSi{sub 2} coating developed by pack cementation to protect Mo-based Mo-Si-B composites was found to be effective up to 1500 C. Shifting coating composition to T1+T2+Mo{sub 3}Si region showed the possibility to extend the coating lifetime above 1500 C by more than ten times via formation of slow growing Mo{sub 3}Si or T2 interlayer without sacrificing the oxidation resistance of the coating. The phase equilibria in the Nb-rich portion of Nb-B system has been evaluated experimentally using metallographic analysis and differential thermal analyzer (DTA). It was shown that Nb{sub ss} …

This thesis is focused on an inclusive search of the t{bar t} {yields} E{sub T} + jets decay channel by means of neural network tools in proton antiproton collisions at {radical}s = 1.96 TeV recorded by the Collider Detector at Fermilab (CDF). At the Tevatron p{bar p} collider top quarks are mainly produced in pairs through quark-antiquark annihilation and gluon-gluon fusion processes; in the Standard Model description, the top quark then decays to a W boson and a b quark almost 100% of the times, so that its decay signatures are classified according to the W decay modes. When only one W decays leptonically, the t{bar t} event typically contains a charged lepton, missing transverse energy due to the presence of a neutrino escaping from the detector, and four high transverse momentum jets, two of which originate from b quarks. In this thesis we describe a t{bar t} production cross section measurement which uses data collected by a 'multijet' trigger, and selects this kind of top decays by requiring a high-P{sub T} neutrino signature and by using an optimized neural network to discriminate top quark pair production from backgrounds. In Chapter 1, a brief review of the Standard Model of …

A measurement of the top quark mass in t{bar t} {yields} l + jets candidate events, obtained from p{bar p} collisions at {radical}s = 1.96 TeV at the Fermilab Tevatron using the CDF II detector, is presented. The measurement approach is that of a matrix element method. For each candidate event, a two dimensional likelihood is calculated in the top pole mass and a constant scale factor, 'JES', where JES multiplies the input particle jet momenta and is designed to account for the systematic uncertainty of the jet momentum reconstruction. As with all matrix elements techniques, the method involves an integration using the Standard Model matrix element for tt production and decay. however, the technique presented is unique in that the matrix element is modified to compensate for kinematic assumptions which are made to reduce computation time. Background events are dealt with through use of an event observable which distinguishes signal from background, as well as through a cut on the value of an event's maximum likelihood. Results are based on a 955 pb{sup -1} data sample, using events with a high-p{sub T} lepton and exactly four high-energy jets, at least one of which is tagged as coming from a …

A search for the Standard Model Higgs boson was carried out in WH {yields} {ell}{nu}b{bar b} process in p{bar p} collisions at a center of mass energy of 1.96 TeV, where W, H, {ell}, {nu}, b and p denote either a W{sup +} or W{sup -} boson, Higgs boson, lepton (electron or muon), neutrino, bottom quark and proton, respectively. The data were collected with the Collider Detector at Fermilab from February 2002 to August 2004. The corresponding integrated luminosity is 319 pb{sup -1}. We select events containing a single high-p{sub T} electron or muon, a large imbalance of the total transverse energy from a neutrino and two b quark jets. The main backgrounds are the W + light flavor/gluon jets and W + heavy flavor jets processes. Requiring the secondary vertex b-tagging enables us to reject the W + light flavor/gluon jets events effectively. After all event selections, they observe 187 events which is in agreement with the Standard Model background expectation of 175.2 {+-} 26.3 events, and there is no significant excess originating from the Higgs boson in the reconstructed dijet invariant mass distribution. They thus set a 95% confidence level upper limit on the production cross section times …

The Main Injector Neutrino Oscillation Search (MINOS) is a two detector long-baseline neutrino experiment designed to study the disappearance of muon neutrinos. MINOS will test the {nu}{sub {mu}} {yields} {nu}{sub {tau}} oscillation hypothesis and measure precisely {Delta}m{sub 23}{sup 2} and sin{sup 2} 2{theta}{sub 23} oscillation parameters. The source of neutrinos for MINOS experiment is Fermilab's Neutrinos at the Main Injector (NuMI) beamline. The energy spectrum and the composition of the beam is measured at two locations, one close to the source and the other 735 km down-stream in the Soudan Mine Underground Laboratory in northern Minnesota. The precision measurement of the oscillation parameters requires an accurate prediction of the neutrino flux at the Far Detector. This thesis discusses the calculation of the neutrino flux at the Far Detector and its uncertainties. A technique that uses the Near Detector data to constrain the uncertainties in the calculation of the flux is described. The data corresponding to an exposure of 2.5 x 10{sup 20} protons on the NuMI target is presented and an energy dependent disappearance pattern predicted by neutrino oscillation hypotheses is observed in the Far Detector data. The fit to MINOS data, for given exposure, yields the best fit values …

A Monte Carlo study of a generic search for new resonances beyond the Standard Model (SM) in the CMS experiment is presented. The resonances are axigluon, coloron, E{sub 6} diquark, excited quark, W{prime}, Z{prime}, and the Randall-Sundrum graviton which decay to dijets. The dijet resonance cross section that the CMS can expect to discover at a 5{sigma} significance or to exclude at 95% confidence level for integrated luminosities of 100 pb{sup -1}, 1 fb{sup -1}, and 10 fb{sup -1} is evaluated. It is shown that a 5{sigma} discovery of a multi-TeV dijet resonance is possible for an axigluon, excited quark, and E{sub 6} diquark. However, a 5{sigma} discovery can not be projected with confidence for a W{prime}, Z{prime} and the Randall-Sundrum graviton. On the other hand, 95% CL exclusion mass regions can be measured for all resonances at high luminosities. In the second part of this dissertation, the analyses of the 2006 test beam data from the combined electromagnetic and hadronic barrel calorimeters are presented. The CMS barrel calorimeters response to a variety of beam particles in a wide momenta range (1 to 350 GeV/c) is measured. Furthermore, using these beam data, the expected performance of the barrel calorimeters to …

This dissertation describes a search for Z/{gamma}* boson pair production decaying into {mu}{mu}{mu}{mu}, {mu}{mu}ee, and eeee final states with approximately 1 fb{sup -1} of data at the Fermilab Tevatron Collider at {radical}s = 1.96 TeV. The small cross section times branching ratio for each channel mandated a thorough study of the acceptance and efficiencies. After optimization, 1.7 {+-} 0.1 events are expected for Standard Model production with a background of 0.13 {+-} 0.03 events. One event was found in the {mu}{mu}ee channel. A cross section limit of 4.4 pb is determined at a 95% confidence level for Standard Model production. Additionally, one parameter and two parameter 95% C.L. limits are found for the anomalous neutral trilinear gauge couplings ZZZ* and ZZ{gamma}*. The one parameter 95% C.L. coupling limits with a form factor scale of 1.2 TeV are: -0.28 < f{sub 40}{sup Z} < 0.28, -0.31 < f{sub 50}{sup Z} < 0.29, -0.26 < f{sub 40}{gamma} < 0.26, and -0.30 < f{sub 50}{sup {gamma}} < 0.28.

The study of the top quark pair production mechanism in proton-antiproton collisions at a center-of-mass energy of 1.96 TeV is described. The main subjects are the measurements of the top quark pair production cross section, the top quark mass and a search for a new particle decaying to the top quark pair. The analyses are based on 1.9 fb{sup -1} of data collected by the Collider Detector at Fermilab (CDF) Run II experiment between March 2002 and May 2007, using the lepton+jets events. The measured top quark pair production cross section is 8.2 {+-} 0.5 (stat.) {+-} 0.8 (syst.) {+-} 0.5 (lum.) pb, which is slightly higher than the standard model prediction at the top mass of 175 GeV/c{sup 2}. The top quark mass is an important parameter in the standard model, and also in the experimental studies. The measured top quark mass if 171.6 {+-} 2.0 (stat.) {+-} 1.3(syst.) GeV/c{sup 2}. Finally, they report on a search for a new gauge boson decaying to t{bar t}, which interferes with the standard model gluon in the q{bar q} {yields} t{bar t} production process. They call such a hypothetical particle a 'Massive Gluon'. The observed t{bar t} invariant mass distribution is …

In 2001, the D0 experiment entered a new era. Run II of the Tevatron at the Fermi National Accelerator Laboratory began, and the collider became the highest energy particle accelerator in the world. Accordingly, the D0 detector had already undergone a series of upgrades in order to fully exploit the physics now within reach. These included improvements to the tracking, calorimetry, muon detection and triggering capabilities. In the Standard Model, the Higgs boson is the last piece of the puzzle that remains to be discovered. The Higgs mechanism and consequently the Higgs boson is thought to be the fundamental ingredient by which particles acquire mass, and its existence (or lack of existence) is one of the most pressing issues in particle physics today. As such, one of the main goals of the Run II physics programme at D0 is to search for it. Armed with new accelerator capabilities, D0 will be able to impose tighter constraints on the mass of the Higgs, and perhaps even detect this elusive particle. If the Higgs does exist, it will be extremely difficult to find. One of the main challenges at a hadron-hadron collider is to reduce the large QCD background that masks the …

Macromolecular interactions are essential for virtually all cellular functions including signal transduction processes, metabolic processes, regulation of gene expression and immune responses. This dissertation focuses on the characterization of two important macromolecular interactions involved in the relationship between Equine Infectious Anemia Virus (EIAV) and its host cell in horse: (1) the interaction between the EIAV Rev protein and its binding site, the Rev-responsive element (RRE) and (2) interactions between equine MHC class I molecules and epitope peptides derived from EIAV proteins. EIAV, one of the most divergent members of the lentivirus family, has a single-stranded RNA genome and carries several regulatory and structural proteins within its viral particle. Rev is an essential EIAV regulatory encoded protein that interacts with the viral RRE, a specific binding site in the viral mRNA. Using a combination of experimental and computational methods, the interactions between EIAV Rev and RRE were characterized in detail. EIAV Rev was shown to have a bipartite RNA binding domain contain two arginine rich motifs (ARMs). The RRE secondary structure was determined and specific structural motifs that act as cis-regulatory elements for EIAV Rev-RRE interaction were identified. Interestingly, a structural motif located in the high affinity Rev binding site is …

The resonant production of tau-lepton pairs is as interesting for the study of Standard Model (SM) physics as the production of lighter leptons pairs. For new phenomena, such as Higgs boson production or in case new particles beyond the SM would arise, the detection of (resonant) pairs of tau leptons becomes much more interesting. This is due to the fact that tau leptons are much heavier than the other leptons, which increases the chance that these new phenomena would be observed first in this channel. Unfortunately their clean detection is far more difficult than that of muons or electrons. The cross section times branching ratio {sigma}{center_dot} Br for the process p{bar p} {yields} Z {yields} {tau}{sup +}{tau}{sup -} was measured at {radical}s = 1.96 GeV using 1.0 fb{sup -1} of data collected by the D0 experiment. This measurement was performed in the channel in which one of the tau leptons decays to a muon and neutrinos, while the other decays either hadronically or to an electron and neutrinos. A set of 1511 events, of which about 20% estimated background, passed all selection criteria. The trigger and muon reconstruction efficiencies, as well as the efficiency for track reconstruction were obtained from …

The author presents new measurements of the type Ia SN rate from the SDSS-II Supernova Survey. The SDSS-II Supernova Survey was carried out during the Fall months (Sept.-Nov.) of 2005-2007 and discovered {approx} 500 spectroscopically confirmed SNe Ia with densely sampled (once every {approx} 4 days), multi-color light curves. Additionally, the SDSS-II Supernova Survey has discovered several hundred SNe Ia candidates with well-measured light curves, but without spectroscopic confirmation of type. This total, achieved in 9 months of observing, represents {approx} 15-20% of the total SNe Ia discovered worldwide since 1885. The author describes some technical details of the SN Survey observations and SN search algorithms that contributed to the extremely high-yield of discovered SNe and that are important as context for the SDSS-II Supernova Survey SN Ia rate measurements.

We study the behavior of charged particles produced in association with Drell-Yan lepton-pairs in the region of the Z-boson in proton-antiproton collisions at 1.96 TeV. We use the direction of the Z-boson in each event to define 'toward', 'away', and 'transverse' regions. For Drell-Yan production (excluding the leptons) both the 'toward' and 'transverse' regions are very sensitive to the 'underlying event', which is defined as everything except the two hard scattered components. The data are corrected to the particle level and are then compared with several PYTHIA models (with multiple parton interactions) and HERWIG (without multiple parton interactions) at the particle level (i.e. generator level). The data are also compared with a previous analysis on the behavior of the 'underlying event' in high transverse momentum jet production. The goal is to produce data that can be used by the theorists to tune and improve the QCD Monte-Carlo models of the 'underlying event' that are used to simulate hadron-hadron collisions.

Images of the Bullet Cluster of galaxies in visible light, X-rays, and through gravitational lensing confirm that most of the matter in the universe is not composed of any known form of matter. The combined evidence from the dynamics of galaxies and clusters of galaxies, the cosmic microwave background, big bang nucleosynthesis, and other observations indicates that 80% of the universe's matter is dark, nearly collisionless, and cold. The identify of the dar, matter remains unknown, but weakly interacting massive particles (WIMPs) are a very good candidate. They are a natural part of many supersymmetric extensions to the standard model, and could be produced as a nonrelativistic, thermal relic in the early universe with about the right density to account for the missing mass. The dark matter of a galaxy should exist as a spherical or ellipsoidal cloud, called a 'halo' because it extends well past the edge of the visible galaxy. The Cryogenic Dark Matter Search (CDMS) seeks to directly detect interactions between WIMPs in the Milky Way's galactic dark matter halo using crystals of germanium and silicon. Our Z-sensitive ionization and phonon ('ZIP') detectors simultaneously measure both phonons and ionization produced by particle interactions. In order to find …

Supermassive black holes (SMBHs) are ubiquitous in the centers of galaxies. Their formation and subsequent evolution is inextricably linked to that of their host galaxies, and the study of galaxy formation is incomplete without the inclusion of SMBHs. The present work seeks to understand the growth and evolution of SMBHs through their interaction with the host galaxy and its environment. In the first part of the thesis (Chap. 2 and 3), we combine a simple semi-analytic model of outflows from active galactic nuclei (AGN) with a simulated dark matter density distribution to study the impact of SMBH feedback on cosmological scales. We find that constraints can be placed on the kinetic efficiency of such feedback using observations of the filling fraction of the Ly{alpha} forest. We also find that AGN feedback is energetic enough to redistribute baryons over cosmological distances, having potentially significant effects on the interpretation of cosmological data which are sensitive to the total matter density distribution (e.g. weak lensing). However, truly assessing the impact of AGN feedback in the universe necessitates large-dynamic range simulations with extensive treatment of baryonic physics to first model the fueling of SMBHs. In the second part of the thesis (Chap. 4-6) we …

A measurement of hadron production cross-sections for the simulation of accelerator neutrino beams and a search for muon neutrino to electron neutrino oscillations in the {Delta}m{sup 2} {approx} 1 eV{sup 2} region. This dissertation presents measurements from two different high energy physics experiments with a very strong connection: the Hadron Production (HARP) experiment located at CERN in Geneva, Switzerland, and the Mini Booster Neutrino Experiment (Mini-BooNE) located at Fermilab in Batavia, Illinois.

This thesis presents the results of an analysis of {nu}{sub {mu}} disappearance with the MINOS experiment, which studies the neutrino beam produced by the NuMI facility at Fermi National Accelerator Laboratory. The rates and energy spectra of charged current {nu}{sub {mu}} interactions are measured in two similar detectors, located at distances of 1 km and 735 km along the NuMI beamline. The Near Detector provides accurate measurements of the initial beam composition and energy, while the Far Detector is sensitive to the effects of neutrino oscillations. The analysis uses data collected between May 2005 and March 2007, corresponding to an exposure of 2.5 x 10{sup 20} protons on target. As part of the analysis, sophisticated software was developed to identify muon tracks in the detectors and to reconstruct muon kinematics. Events with reconstructed tracks were then analyzed using a multivariate technique to efficiently isolate a pure sample of charged current {nu}{sub {mu}} events. An extrapolation method was also developed, which produces accurate predictions of the Far Detector neutrino energy spectrum, based on data collected at the Near Detector. Finally, several techniques to improve the sensitivity of an oscillation measurement were implemented, and a full study of the systematic uncertainties was …

Run IIa of the D0 experiment at the Tevatron took place between Spring 2002 and Spring 2006, collecting approximately 1.2 fb{sup -1} of data. A fundamental principal of the D0 computing model is the utilization of globally distributed computing resources as part of a grid. In particular use is made of the 'SAMGrid'. The first part of this thesis describes the work undertaken at Imperial College on several D0 distributed computing projects. These included the deployment and development of parts of the SAMGrid software suite, and participation in the Winter 2003/2004 data reprocessing effort. One of the major goals of the D0 experiment is the observation of mixing in the B{sub s}{sup 0}-meson system. The measurement of the mixing frequency is important as it can be used to constrain the CKM matrix, which describes CP violation in the Standard Model. The second part of this thesis describes the development of an opposite side flavour tagging algorithm and its calibration using B{sup +} and B{sub d}{sup 0} meson decays. The application of this algorithm to an analysis of the B{sub s}{sup 0} meson system is then described, which lead to the world's first two-sided limit on the B{sub s}{sup 0} meson …