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Abscisic acid regulates secondary cell-wall formation and lignin deposition in Arabidopsis thaliana through phosphorylation of NST1
Article using a combination of biochemical and genetic approaches to show how ABA can regulate lignin biosynthesis. This work provides a basis for designing trees and other biomass plants that are better adapted to stress and climate change. This article includes a correction on the first page.
Date:
February 2, 2021
Creator:
Liu, Chang; Yu, Hasi; Rao, Xiaolan; Li, Laigeng & Dixon, R. A.
Object Type:
Article
System:
The UNT Digital Library
N-acylethanolamide metabolizing enzymes are upregulated in human neural progenitor-derived neurons exposed to sub-lethal oxidative stress
Article is a study determining whether ReN cells, a superior cell model system for studying neurodevelopment, differentiation, and neuroprotection, express proteins involved in canonical eCB NAE signaling and whether oxidative stress can induce their expression. This study is a first step toward determining how oxidative stress affects CB1, CB2, FAAH, NAAA, and NAPE-PLD expression and their potential defense against oxidative stress.
Date:
August 8, 2022
Creator:
Duncan, Scott R.; Riordan, Sean M.; Hall, Conner W.; Payne, Andrew J.; Chapman, Kent Dean & Koulen, Peter
Object Type:
Article
System:
The UNT Digital Library
Air pollution and endocrine disruptors induce human microbiome imbalances: A systematic review of recent evidence and possible biological mechanisms
Article presents a systematic review examining the scientific evidence on the effect of environmental toxicants, air pollutants and endocrine disruptors (EDCs), on compositional and diversity of human microbiota.
Date:
February 11, 2022
Creator:
Mousavi, Sayed Esmaeil; Delgado-Saborit, Juana Maria; Adivi, Anna; Pauwels, Sara & Godderis, Lode
Object Type:
Article
System:
The UNT Digital Library
Analysis of Pectin-derived Monosaccharides from Arabidopsis Using GC–MS
Article describes how pectin is a complex polysaccharide present in the plant cell wall, whose composition is constantly remodeled to adapt to environmental or developmental changes. Here, authors describe a quick and efficient gas chromatography–mass spectrometry (GC–MS)-based method that allows the differential analysis of pectin monosaccharide composition in plants under different conditions or between mutant plants and their respective wild types.
Date:
August 20, 2023
Creator:
Scholz, Patricia; Chapman, Kent Dean; Ischebeck, Till & Guzha, Athanas
Object Type:
Article
System:
The UNT Digital Library
Analysis of the potential behavioral impact of methanol when used as a solvent: Dataset from zebrafish (Danio rerio) behavioral research
This article is a dataset that describes behavioral results in zebrafish (Danio rerio) individually exposed to methanol, a solvent which is capable of altering physiology and behavior high concentrations.
Date:
April 1, 2021
Creator:
Hamilton, Trevor J.; Szaszkiewicz, Joshua; Krook, Jeffrey & Burggren, Warren W.
Object Type:
Article
System:
The UNT Digital Library
Analysis of transcribed sequences from young and mature zebrafish thrombocytes
Article studying thrombocyte function and development in adult zebrafish. The authors performed single-cell RNA sequencing of the young and mature zebrafish thrombocytes and compared the two datasets for young and mature thrombocyte transcripts.
Date:
September 19, 2021
Creator:
Fallatah, Weam; De, Ronika; Burks, David J.; Azad, Rajeev K. & Jagadeeswaran, Pudur
Object Type:
Article
System:
The UNT Digital Library
Analyzing Mass Spectrometry Imaging Data of 13C-Labeled Phospholipids in Camelina sativa and Thlaspi arvense (Pennycress) Embryos
This article uses currently available software and techniques to describe a workflow to analyze ¹³C-labeled isotopologues of the membrane lipid and storage oil lipid intermediate—phosphatidylcholine (PC). Results demonstrated greater ¹³C-isotopic labeling in the cotyledons of developing embryos compared with the embryonic axis.
Date:
March 4, 2021
Creator:
Romsdahl, Trevor B.; Kambhampati, Shrikaar; Koley, Somnath; Yadav, Umesh P.; Alonso, Ana Paula; Allen, Doug K. et al.
Object Type:
Article
System:
The UNT Digital Library
Angiogenesis in the Avian Embryo Chorioallantoic Membrane: A Perspective on Research Trends and a Case Study on Toxicant Vascular Effects
This article considers areas of cardiovascular research that have benefited from studies of the chorioallantoic membrane (CAM), including the themes of investigation of the CAM’s hemodynamic influence on heart and central vessel development, use of the CAM as a model vascular bed for studying angiogenesis, and the CAM as an assay tool.
Date:
October 28, 2020
Creator:
Burggren, Warren W. & Antich, Maria Rojas
Object Type:
Article
System:
The UNT Digital Library
Application of Genome Editing in Tomato Breeding: Mechanisms, Advances, and Prospects
This article is a review presenting examples of gene editing responsible for conferring both biotic and abiotic stresses in tomato simultaneously. The literature on using this powerful technology to improve fruit quality, yield, and nutritional aspects in tomato is highlighted.
Date:
January 12, 2021
Creator:
Salava, Hymavathi; Thula, Sravankumar; Mohan, Vijee; Kumar, Rahul & Maghuly, Fatemeh
Object Type:
Article
System:
The UNT Digital Library
ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 1 (ADPG1) releases latent defense signals in stems with reduced lignin content
Article highlights the importance of pectin in cell wall integrity and the value of lignin modification as a tool to interrogate the informational content of plant cell walls.
Date:
January 23, 2020
Creator:
Gallego-Giraldo, Lina; Liu, Chang; Pose-Albacete, Sara; Pattathil, Sivakumar; Peralta, Angelo Gabriel; Young, Jenna et al.
Object Type:
Article
System:
The UNT Digital Library
The Arabidopsis gene co-expression network
Article presents an Arabidopsis gene co-expression network constructed using RNA-Seq datasets, which will serve as a useful resource for the Arabidopsis research community to gain insights into Arabidopsis gene interactions and functions.
Date:
April 26, 2022
Creator:
Burks, David J.; Sengupta, Soham; De, Ronika; Mittler, Ron & Azad, Rajeev K.
Object Type:
Article
System:
The UNT Digital Library
An Arabidopsis Oxalyl-CoA Decarboxylase, AtOXC, Is Important for Oxalate Catabolism in Plants
This article identifies, in Arabidopsis, an oxalyl-CoA decarboxylase (AtOXC) that is capable of catalyzing the second step in the proposed pathway of oxalate catabolism.
Date:
March 23, 2021
Creator:
Foster, Justin; Cheng, Ninghui; Paris, Vincent; Wang, Lingfei; Wang, Jin; Wang, Xiaoqiang et al.
Object Type:
Article
System:
The UNT Digital Library
Arabidopsis thaliana EARLY RESPONSIVE TO DEHYDRATION 7 Localizes to Lipid Droplets via Its Senescence Domain
This article includes a proteomics analysis of Lipid Droplets (LDs) isolated from drought-stressed Arabidopsis leaves and identifying EARLY RESPONSIVE TO DEHYDRATION 7 (ERD7) as a putative LD protein. Observations provide new insight to ERD7 and the SD-containing family of proteins in plants and suggest that ERD7 may be involved in functional aspects of plant stress response that also include localization to the LD surface.
Date:
April 14, 2021
Creator:
Doner, Nathan M.; Seay, Damien C.; Mehling, Marina; Sun, Siqi; Gidda, Satinder K.; Schmitt, Kerstin et al.
Object Type:
Article
System:
The UNT Digital Library
Are Tourists Facilitators of the Movement of Free-Ranging Dogs?
Article discusses how free-ranging dogs are of major conservation concern worldwide as they negatively affect wildlife. Although scientists and governmental agencies are aware of the problem and responsible pet ownership strategies are beginning to be implemented, the tourism sector must be explicitly integrated into wildlife conservation management strategies.
Date:
December 16, 2022
Creator:
Schüttler, Elke & Jiménez, Jaime E.
Object Type:
Article
System:
The UNT Digital Library
Assessing distribution shifts and ecophysiological characteristics of the only Antarctic winged midge under climate change scenarios
Article integrating ecophysiological information with the development of new high-resolution climatic layers for Antarctica, to better understand how the distribution of P. steinenii may respond to change over the next century under different IPCC climate change scenarios. The authors conclude that the species has the potential to expand its distribution to include parts of the west and east coasts of the Antarctic Peninsula and even coastal ice-free areas in parts of continental Antarctica. The authors also propose P. steinenii as an effective native sentinel and indicator species of climate change in the Antarctic.
Date:
June 3, 2020
Creator:
Contador, Tamara; Gañán, Melisa; Bizama, Gustavo; Fuentes-Jaque, Guillermo; Morales, Luis; Rendoll, Javier et al.
Object Type:
Article
System:
The UNT Digital Library
Benchmarking Metagenomic Classifiers on Simulated Ancient and Modern Metagenomic Data
Article describes how taxonomic profiling of ancient metagenomic samples is challenging due to the accumulation of specific damage patterns on DNA over time. The authors performed a comprehensive evaluation on simulated metagenomes representing human dental calculus microbiome, with the level of DNA damage successively raised to mimic modern to ancient metagenomes.
Date:
October 2, 2023
Creator:
Pusadkar, Vaidehi & Azad, Rajeev K.
Object Type:
Article
System:
The UNT Digital Library
Better together: Protein partnerships for lineage-specific oil accumulation
Article reviews recent evidence that protein–protein interactions in each of the three major phases of oil formation appear to have profound effects on specialized oil accumulation. This article is part of the special issue: Physiology and metabolism (2022).
Date:
February 24, 2022
Creator:
Busta, Lucas; Chapman, Kent Dean & Cahoon, Edgar B.
Object Type:
Article
System:
The UNT Digital Library
Beyond the Chicken: Alternative Avian Models for Developmental Physiological Research
This article is a review examining the characteristics that make an animal model attractive for developmental research and explores opportunities presented by the embryo to adult continuum of alternative bird models including quail, ratites, songbirds, birds of prey, and corvids.
Date:
October 21, 2021
Creator:
Flores-Santin, Josele & Burggren, Warren W.
Object Type:
Article
System:
The UNT Digital Library
Bibliometric Analysis of Integrated Pest Management Practices
Article discusses how integrated pest management (IPM) is a wide-ranging strategy that involves tactics for the structural control of pests and diseases, also known as integrated pest control (IPC). The authors' prime aim of this study is to explore global scientific publications regarding integrated pest management and map the recent global trends in this innovative research domain, thereby providing future research directions based on dynamic observations.
Date:
July 26, 2023
Creator:
Zhou, Xi; Yang, Chongxi; Yesmin, Sabina; Islam, Md Ashraful & Sarkar, Apurbo
Object Type:
Article
System:
The UNT Digital Library
Biocultural Calendars Across Four Ethnolinguistic Communities in Southwestern South America
Article describes how, since the mid-20th century, the so-called Great Acceleration has amplified processes of ecosystem degradation, extinction of biological species, displacement of local peoples, losses of languages, and cultural diversity. The authors examine cultural practices and socio-environmental changes across four contrasting ethnolinguistic communities in southwestern South America, from southern to northern Chile along a marked climatic gradient to show the broad application of the concept of biocultural calendars.
Date:
April 20, 2023
Creator:
Rozzi, Ricardo, 1960-; Álvarez, Ricardo; Castro, Victoria; Núñez, David; Ojeda, Jaime & Tauro, Alejandra
Object Type:
Article
System:
The UNT Digital Library
Brassinosteroids Inhibit Autotropic Root Straightening by Modifying Filamentous-Actin Organization and Dynamics
Article describes study testing the hypothesis that epi-brassinolide (eBL) might enhance root gravitropism through its effects on filamentous-actin (F-actin) in plants.
Date:
February 4, 2020
Creator:
Bang, Louise de; Paez-Garcia, Ana; Cannon, Ashley E.; Chin, Sabrina; Kolape, Jaydeep; Liao, Fuqi et al.
Object Type:
Article
System:
The UNT Digital Library
CaMV35S promoter – A plant biology and biotechnology workhorse in the era of synthetic biology
This review article calls for establishing the CaMV 35S promoter as a quantitative reference standard for transcription activity in plants.
Date:
November 18, 2020
Creator:
Amack, Stephanie C. & Antunes, Mauricio S.
Object Type:
Article
System:
The UNT Digital Library
CancerNet: a unified deep learning network for pan‑cancer diagnostics
Article states that despite remarkable advances in cancer research, cancer remains one of the leading causes of death worldwide. The author's proposed framework for cancer diagnostics detects cancers and their tissues of origin using a unified model of cancers encompassing 33 cancers represented in The Cancer Genome Atlas. Their model exploits the learned features of different cancers reflected in the respective dysregulated epigenomes, holding a great promise in early cancer detection.
Date:
June 13, 2022
Creator:
Gore, Steven & Azad, Rajeev K.
Object Type:
Article
System:
The UNT Digital Library
Cascading effects of COVID-19 on population mobility and air quality: An exploration including place characteristics using geovisualization
Article examining the population mobility and air quality before and after the lockdown (mandated restriction of activity) during the public health response to COVID-19. This article is part of the Special Issue on COVID-19.
Date:
January 22, 2022
Creator:
Atkinson, Samuel F.; Kala, Abhishek K. & Tiwari, Chetan
Object Type:
Article
System:
The UNT Digital Library