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Deep learning for peptide identification from metaproteomics datasets (open access)

Deep learning for peptide identification from metaproteomics datasets

This article explores a proposed deep-learning-based algorithm called DeepFilter for improving peptide identifications from a collection of tandem mass spectra. The authors find that DeepFilter is believed to generalize properly to new, previously unseen peptide-spectrum-matches and can be readily applied in peptide identification from metaproteomics data.
Date: July 8, 2021
Creator: Feng, Shichao; Sterzenbach, Ryan & Guo, Xuan
Object Type: Article
System: The UNT Digital Library
A New Citation Recommendation Strategy Based on Term Functions in Related Studies Section (open access)

A New Citation Recommendation Strategy Based on Term Functions in Related Studies Section

This article focuses on citation recommendation in the related studies section by applying the term function of a citation context, potentially improving the efficiency of writing a literature review. The citation recommendation strategy can be helpful for valuable citation discovery, semantic scientific retrieval, and automatic literature review generation.
Date: May 8, 2021
Creator: Chen, Haihua
Object Type: Article
System: The UNT Digital Library

Cross-Language Comparison of Mismatched Annotation in Interlinear-Glossed Texts

This presentation explores the variation in interlinear-glossed text (IGT) in 5 closely related South-Central Tibeto-Burman languages with verb stem alternation, reduplicated adverbial modifiers, and pre-verbal directionals. While IGT is a rich representation of language, IGT for even closely related languages can look markedly different due to individual linguists’ divergent analyses. In comparing the discrepancies between representations of such features, we gain insight into the underlying analytic thinking of the annotator to reexamine and improve analyses.
Date: January 8, 2021
Creator: Burke, Mary & Chelliah, Shobhana Lakshmi
Object Type: Presentation
System: The UNT Digital Library
Monitoring, Mapping, and Modeling Spatial–Temporal Patterns of PM2.5 for Improved Understanding of Air Pollution Dynamics Using Portable Sensing Technologies (open access)

Monitoring, Mapping, and Modeling Spatial–Temporal Patterns of PM2.5 for Improved Understanding of Air Pollution Dynamics Using Portable Sensing Technologies

This article maps the dynamics of PM2.5 concentrations at high spatio-temporal resolutions using bicycle-based, mobile measures on a university campus.
Date: June 5, 2020
Creator: Hart, Ronan; Liang, Lu & Dong, Pinliang
Object Type: Article
System: The UNT Digital Library
Effect of amorphous cellulose on the deformation behavior of cellulose composites: molecular dynamics simulation (open access)

Effect of amorphous cellulose on the deformation behavior of cellulose composites: molecular dynamics simulation

This article is a study aimed at predicting and enhancing the properties of the blend, as well as exploring the mechanism, of a polylactic acid (PLA)/amorphous cellulose composite system through molecular characterization. The static properties of the amorphous cellulose/PLA blend model and the mechanical response of the material under uniaxial tension were studied by molecular dynamics simulation to establish the structure–property relationship.
Date: June 8, 2021
Creator: Ren, Zechun; Guo, Rui; Zhou, Xinyuan; Bi, Hongjie; Jia, Xin; Xu, Min et al.
Object Type: Article
System: The UNT Digital Library
POSMM: an efficient alignment-free metagenomic profiler that complements alignment-based profiling (open access)

POSMM: an efficient alignment-free metagenomic profiler that complements alignment-based profiling

Article presents POSMM, Python-Optimized Standard Markov Model classifier, which is a new incarnation of the Markov model approach to metagenomic sequence analysis. The authors claim that by combining POSMM with ultrafast classifiers such as Kraken2, their complementary strengths can be leveraged to produce higher overall accuracy in metagenomic sequence classification than by either as a standalone classifier. POSMM is a user-friendly and highly adaptable tool designed for broad use by the metagenome scientific community.
Date: March 8, 2023
Creator: Burks, David J.; Pusadkar, Vaidehi & Azad, Rajeev K.
Object Type: Article
System: The UNT Digital Library
Growth of Highly-Ordered Metal Nanoparticle Arrays in the Dimpled Pores of an Anodic Aluminum Oxide Template (open access)

Growth of Highly-Ordered Metal Nanoparticle Arrays in the Dimpled Pores of an Anodic Aluminum Oxide Template

Article presents a reliable, scalable, and inexpensive technology for the fabrication of ordered arrays of metal nanoparticles with large areal coverage on various substrates. Using a simple model, the experimental results were interpreted and supported by numerical estimations.
Date: November 8, 2022
Creator: Farmer, Gavin; Abraham, James; Littler, Chris; Syllaios, A. J. & Philipose, Usha
Object Type: Article
System: The UNT Digital Library

Flipped and Free: an inverted, active-learning general chemistry course using exclusively OER

Presentation on using a flipped course format and including an open textbook, OpenStax: Chemistry 2e. Flipped courses provide lecture content that is accessible online, and they use class time for active learning activities. It is a part of 2022 University of North Texas Open Access Symposium that was held on March 8, 2022.
Date: March 8, 2022
Creator: Petros, Amy K.
Object Type: Presentation
System: The UNT Digital Library
Open Educational Resources in Action: 2022 UNT Open Access Symposium captions transcript

Open Educational Resources in Action: 2022 UNT Open Access Symposium

Video recording of the 2022 University of North Texas Open Access Symposium held on March 8, 2022.
Date: March 8, 2022
Creator: Smatresk, Neal; Chelliah, Shobhana Lakshmi; Lotven, Samson; Harold, Jill; Hollinger, Lisa; Webb, Jae et al.
Object Type: Video
System: The UNT Digital Library

Multi-Directional Leadership

Presentation exploring leadership as a multi-directional relationship. It was presented at the 2023 Conference on Academic Library Management held June 5-9, 2023.
Date: June 8, 2023
Creator: Yanowski, Kevin
Object Type: Presentation
System: The UNT Digital Library
N-acylethanolamide metabolizing enzymes are upregulated in human neural progenitor-derived neurons exposed to sub-lethal oxidative stress (open access)

N-acylethanolamide metabolizing enzymes are upregulated in human neural progenitor-derived neurons exposed to sub-lethal oxidative stress

Article is a study determining whether ReN cells, a superior cell model system for studying neurodevelopment, differentiation, and neuroprotection, express proteins involved in canonical eCB NAE signaling and whether oxidative stress can induce their expression. This study is a first step toward determining how oxidative stress affects CB1, CB2, FAAH, NAAA, and NAPE-PLD expression and their potential defense against oxidative stress.
Date: August 8, 2022
Creator: Duncan, Scott R.; Riordan, Sean M.; Hall, Conner W.; Payne, Andrew J.; Chapman, Kent Dean & Koulen, Peter
Object Type: Article
System: The UNT Digital Library
Case report: Early-onset osteoporosis in a patient carrying a novel heterozygous variant of the WNT1 gene (open access)

Case report: Early-onset osteoporosis in a patient carrying a novel heterozygous variant of the WNT1 gene

Article presents a case study of a 35 year-old Caucasian woman who experienced multiple vertebral fractures two months after her second pregnancy. The results suggest a potential role of heterozygous WNT1 variants in the pathogenesis of early-onset osteoporosis. The authors suggest that teriparatide is one of the most appropriate available therapies for such cases.
Date: August 8, 2022
Creator: Campopiano, Maria Cristina; Fogli, Antonella; Michelucci, Angela; Mazoni, Laura; Longo, Antonella; Borsari, Simona et al.
Object Type: Article
System: The UNT Digital Library
Event-Driven Deep Learning for Edge Intelligence (EDL-EI) (open access)

Event-Driven Deep Learning for Edge Intelligence (EDL-EI)

Article on deep-learning framework for edge intelligence EDL-EI (event-driven deep learning for edge intelligence). To verify the proposed framework, the authors include a case study of air-quality scenarios based for the most polluted cities in South Korea and China.
Date: September 8, 2021
Creator: Shah, Sayed Khushal; Tariq, Zeenat; Lee, Jeehwan & Lee, Yugyung
Object Type: Article
System: The UNT Digital Library
Ion-exchange mechanisms and interfacial reaction kinetics during aqueous corrosion of sodium silicate glasses (open access)

Ion-exchange mechanisms and interfacial reaction kinetics during aqueous corrosion of sodium silicate glasses

Article on the ion-exchange and associated interfacial reaction mechanisms of silicate glasses. This work reports findings that shed light on the complex ion-exchange mechanisms during glass hydration and enables more detailed understanding of the corrosion and glass-water interactions of silicate glasses which has the potential to impact both science and technology.
Date: April 8, 2021
Creator: Deng, Lu; Miyatani, Katsuaki; Suehara, Michinori; Amma, Shin-ichi; Ono, Madoka; Urata, Shingo et al.
Object Type: Article
System: The UNT Digital Library
A theoretical study of M–M′ polar-covalent bonding in heterobimetallic multinuclear organometallic complexes of monovalent group 11 metal centres (open access)

A theoretical study of M–M′ polar-covalent bonding in heterobimetallic multinuclear organometallic complexes of monovalent group 11 metal centres

Article describes how complexes with closed-shell (d10–d10) interactions have been studied for their interesting luminescence properties in organic light-emitting diode (OLED) devices. The present computational study aims at understanding the chemical bonding/interactions in a series of molecules with unusually short metal–metal bond distances between monovalent coinage-metal (d10–d10) centres.
Date: February 8, 2023
Creator: Rabaâ, Hassan; Sundholm, Dage & Omary, Mohammad A.
Object Type: Article
System: The UNT Digital Library
Broadband Absorption in Patterned Metal/Weakly-Absorbing-Spacer/Metal with Graded Photonic Super-Crystal (open access)

Broadband Absorption in Patterned Metal/Weakly-Absorbing-Spacer/Metal with Graded Photonic Super-Crystal

Article studying high light absorption in two devices: a stack of Au-pattern/insulator/Au-film and a stack of Au-pattern/weakly-absorbing-material/Au-film where the Au-pattern was structured in graded photonic super-crystal. Multiple-band absorption, including one near 1500 nm, in a stack of Au-pattern/spacer/Au-film was observed.
Date: April 8, 2021
Creator: Kamau, Steve; Hassan, Safaa; Alnasser, Khadijah; Zhang, Hualiang; Cui, Jingbiao & Lin, Yuankun
Object Type: Article
System: The UNT Digital Library

Empowering Student Workers Using Flipped and Agile Project Management

Presentation introduces the concepts of Flipped Instruction and Agile Project Management and discusses how those methodologies may be applied to student roles in library and digital humanities projects. It was presented at the Association of College and Research Libraries (ACRL) Together Wherever virtual event held on June 8-12, 2020.
Date: June 8, 2020
Creator: Stayton, Jennifer
Object Type: Presentation
System: The UNT Digital Library
Protein functional module identification method combining topological features and gene expression data (open access)

Protein functional module identification method combining topological features and gene expression data

Article conducting an intensive study on the problems of low recognition efficiency and noise in the overlapping structure of protein functional modules, based on topological characteristics of PPI network. Developing a protein function module recognition method ECTG based on Topological Features and Gene expression data for Protein Complex Identification. The experimental results show that the ECTG algorithm can detect protein functional modules better.
Date: June 8, 2021
Creator: Zhao, Zihao; Xu, Wenjun; Chen, Aiwen; Han, Yueyue; Xia, Shengrong; Xiang, ChuLei et al.
Object Type: Article
System: The UNT Digital Library
Webinar 2: Creating and Collecting Oral History captions transcript

Webinar 2: Creating and Collecting Oral History

Video recording of the second webinar from the Oral History Forum. The theme of the webinar explores the relevant issues and concerns regarding creating and generating oral histories in a time of social and technological change.
Date: February 8, 2023
Creator: Reeves, Troy; Milbrodt, Natalie & Milligan, Sarah
Object Type: Video
System: The UNT Digital Library
Computing microRNA-gene interaction networks in pan-cancer using miRDriver (open access)

Computing microRNA-gene interaction networks in pan-cancer using miRDriver

This article is a study where the authors integrated the multi-omics datasets such as copy number aberration, DNA methylation, gene and microRNA expression to identify the signature microRNA-gene associations from frequently aberrated DNA regions across pan-cancer utilizing a LASSO-based regression approach.
Date: March 8, 2022
Creator: Bose, Banabithi; Moravec, Matthew & Bozdag, Serdar
Object Type: Article
System: The UNT Digital Library
A self-powered wireless motion sensor based on a high-surface area reverse electrowetting-on-dielectric energy harvester (open access)

A self-powered wireless motion sensor based on a high-surface area reverse electrowetting-on-dielectric energy harvester

Article presents a motion-sensing device with the capability of harvesting energy from low-frequency motion activities. Based on the high surface area reverse electrowetting-on-dielectric (REWOD) energy harvesting technique, mechanical modulation of the liquid generates an AC signal, which is modeled analytically and implemented in Matlab and COMSOL.
Date: March 8, 2022
Creator: Tasneem, Nishat Tarannum; Biswas, Dipon K.; Adhikari, Pashupati R.; Gunti, Avinash; Patwary, Adnan B.; Reid, Russell C. et al.
Object Type: Article
System: The UNT Digital Library
Lightweight, Anisotropic, Compressible, and Thermally-Insulating Wood Aerogels with Aligned Cellulose Fibers (open access)

Lightweight, Anisotropic, Compressible, and Thermally-Insulating Wood Aerogels with Aligned Cellulose Fibers

Proposes a fabrication method for making a lightweight, anisotropic, and compressible wood aerogel with aligned cellulose fibers by a simple chemical treatment.
Date: January 8, 2020
Creator: Sun, Hao; Bi, Hongjie; Lin, Xin; Cai, Liping & Xu, Min
Object Type: Article
System: The UNT Digital Library
Country Differences in Determinants of Behavioral Intention towards Sustainable Apparel Products (open access)

Country Differences in Determinants of Behavioral Intention towards Sustainable Apparel Products

This article explores determinants of behavioral intention toward sustainable apparel products (SAP). It examines both consumer characteristics (shopping values, consciousness of sustainability, perceived consumer effectiveness, and environmental knowledge) and marketing perspective (evaluation criteria of SAP) determinants for encouraging sustainable apparel consumption behaviors. Significant country differences emerge and validate that differentiated marketing strategies are required when targeting global consumers.
Date: January 8, 2021
Creator: Jung, Hye Jung; Oh, Kyung Wa & Kim, Haejung
Object Type: Article
System: The UNT Digital Library
Ecological determinants of smart home ecosystems: A coopetition framework (open access)

Ecological determinants of smart home ecosystems: A coopetition framework

Article describing the strategic motivations and critical factors involved in the competition-based evolution of smart home ecosystems from early to growth phases, leading to a decision among the largest competitors to engage in coopetition.
Date: September 8, 2021
Creator: Struckell, Elisabeth; Ojha, Divesh; Patel, Pankaj C. & Dhir, Amandeep
Object Type: Article
System: The UNT Digital Library