IslandCafe: Compositional Anomaly and Feature Enrichment Assessment for Delineation of Genomic Islands (open access)

IslandCafe: Compositional Anomaly and Feature Enrichment Assessment for Delineation of Genomic Islands

Article discusses IslandCafe, a proposed method for genomic island detection.
Date: October 1, 2019
Creator: Jani, Mehul & Azad, Rajeev K.
System: The UNT Digital Library
Effect of MS222 on Hemostasis in Zebrafish (open access)

Effect of MS222 on Hemostasis in Zebrafish

Article studying the effect of MS222 on hemostasis in Zebrafish. The authors performed various assays and find that Hct values, the amount of blood collected, bleeding, and coagulation differ significantly between anesthetized and nonanesthetized fish. These results suggest that blood collected after MS222 anesthesia of zebrafish has altered hemostasis.
Date: May 1, 2019
Creator: Afnan, Deebani; Iyer, Neha; Raman, Revathi & Jagadeeswaran, Pudur
System: The UNT Digital Library
Does the left aorta provide proton-rich blood to the gut when crocodilians digest a meal? (open access)

Does the left aorta provide proton-rich blood to the gut when crocodilians digest a meal?

Article measuring blood parameters in the left aortae and atria of crocodilians. The findings do not support the hypothesis that a R–L shunt serves to deliver CO2 for the gastrointestinal system after feeding in crocodilians.
Date: February 4, 2019
Creator: Conner, Justin L.; Crossley, Janna; Elsey, Ruth M.; Nelson, Derek; Wang, Tobias & Crossley, Dane A., II
System: The UNT Digital Library
A Simple Method for Measuring Apoplast Hydration and Collecting Apoplast Contents (open access)

A Simple Method for Measuring Apoplast Hydration and Collecting Apoplast Contents

This article describes a refined method optimized for maize (Zea mays) seedling leaves, which not only provides a simple procedure for obtaining apoplast fluid, but also allows direct calculation of apoplast hydration at the time of harvest for every sample.
Date: March 1, 2019
Creator: Gentzel, Irene; Giese, Laura; Zhao, Wanying; Alonso, Ana Paula & Mackey, David
System: The UNT Digital Library
Complete Genome Sequences of 44 Arthrobacter Phages (open access)

Complete Genome Sequences of 44 Arthrobacter Phages

This article reports the complete genome sequences of 44 phages infecting Arthrobacter sp. strain ATCC 21022.
Date: February 1, 2018
Creator: Klyczek, Karen; Jacobs-Sera, Deborah; Adair, Tamarah; Adams, Sandra D.; Ball, Sarah; Benjamin, Robert C. et al.
System: The UNT Digital Library
Developmental plasticity of mitochondrial function in American alligators, Alligator mississippiensis (open access)

Developmental plasticity of mitochondrial function in American alligators, Alligator mississippiensis

This article investigates the effects of chronic developmental hypoxia on cardiac mitochondrial function in embryonic and juvenile American alligators (Alligator mississippiensis).
Date: October 1, 2016
Creator: Galli, Gina L. J.; Crossley, Janna; Elsey, Ruth M.; Dzialowski, Edward M. (Edward Michael); Shiels, Holly A. & Crossley, Dane A., II
System: The UNT Digital Library
Salt Sensitivity of the Morphometry of Artemia Franciscana During Development: A Demonstration of 3d Critical Windows (open access)

Salt Sensitivity of the Morphometry of Artemia Franciscana During Development: A Demonstration of 3d Critical Windows

This article uses a 3D conceptual farmework of 'critical windows' to examine whether the morphometry of Artemia franciscana is altered by salinity exposure during certain key periods of development.
Date: December 1, 2015
Creator: Mueller, Casey A.; Willis, Eric & Burggren, Warren W.
System: The UNT Digital Library
Complete Genome Sequence of a Cyanotroph, Pseudomonas fluorescens NCIMB 11764, Employing Single-Molecule Real-Time Technology (open access)

Complete Genome Sequence of a Cyanotroph, Pseudomonas fluorescens NCIMB 11764, Employing Single-Molecule Real-Time Technology

This article reports the application of single-molecule real-time sequencing for determining the entire genome structure of the cyanotroph Pseudomonas fluorescens NCIMB 11764.
Date: October 1, 2015
Creator: Jones, Lauren B. & Kunz, Daniel A.
System: The UNT Digital Library
A determination of the spatial concordance between Lyme disease incidence and habitat probability of its primary vector Ixodes scapularis (black-legged tick) (open access)

A determination of the spatial concordance between Lyme disease incidence and habitat probability of its primary vector Ixodes scapularis (black-legged tick)

This article involves mapping the probability of occurrence that the disease vector exists in the environment, mapping the incidence of Lyme disease in the human population and examining the spatial concordance between the probability map and incidence map.
Date: November 1, 2014
Creator: Atkinson, Samuel F.; Sarkar, Sahotra; Avina, Aldo; Schuermann, Jim A. & Williamson, Phillip C.
System: The UNT Digital Library
HSI2/VAL1 PHD-like domain promotes H3K27 trimethylation to repress the expression of seed maturation genes and complex transgenes in Arabidopsis seedlings (open access)

HSI2/VAL1 PHD-like domain promotes H3K27 trimethylation to repress the expression of seed maturation genes and complex transgenes in Arabidopsis seedlings

This article studies the novel mutant allele hsi2-4, isolated in a genetic screen to identify Arabidopsis mutants with consitutively elevated expression of a glutathione S-transferase F8:luciferase reporter gene in Arabidopsis.
Date: November 1, 2014
Creator: Veerappan, Vijaykumar; Chen, Naichong; Reichert, Angelika & Allen, Randy D.
System: The UNT Digital Library
Oleanolic acid and its synthetic derivatives for the prevention and therapy of cancer: Preclinical and clinical evidence (open access)

Oleanolic acid and its synthetic derivatives for the prevention and therapy of cancer: Preclinical and clinical evidence

Article on oleanolic acid and its synthetic derivatives for the prevention and therapy of cancer with preclinical and clinical evidence.
Date: May 1, 2014
Creator: Shanmugam, Muthu K.; Dai, Xiaoyun; Kumar, Alan Prem; Tan, Benny K-H; Sethi, Gautam & Bishayee, Anupam
System: The UNT Digital Library
Targeted abrogation of diverse signal transduction cascades by emodin for the treatment of inflammatory disorders and cancer (open access)

Targeted abrogation of diverse signal transduction cascades by emodin for the treatment of inflammatory disorders and cancer

Article on the targeted abrogation of diverse signal transduction cascades by emodin for the treatment of inflammatory disorders and cancer.
Date: December 1, 2013
Creator: Shrimali, Deepti; Shanmugam, Muthu K.; Kumar, Alan Prem; Zhang, Jingwen; Tan, Benny K-H; Ahn, Kwang Seok et al.
System: The UNT Digital Library
Emodin inhibits growth and induces apoptosis in an orthotopic hepatocellular carcinoma model by blocking activation of STAT3 (open access)

Emodin inhibits growth and induces apoptosis in an orthotopic hepatocellular carcinoma model by blocking activation of STAT3

Article on emodin inhibiting growth and inducing apoptosis in an orthotopic hepatocellular carcinoma model by blocking activation of STAT3.
Date: October 1, 2013
Creator: Subramaniam, Aruljothi; Shanmugam, Muthu K.; Ong, Tina H.; Li, Feng; Perumal, Ekambaram; Chen, Luxi et al.
System: The UNT Digital Library
Digital equivalence of biological neural AND-gate, OR-gate and MIN-Gate (open access)

Digital equivalence of biological neural AND-gate, OR-gate and MIN-Gate

Article discussing the digital equivalence of biological neural AND-gate, OR-gate and MIN-gate.
Date: September 1, 2013
Creator: Tam, Nicoladie D.
System: The UNT Digital Library
Arabidopsis Thaliana--Myzus Persicae Interaction: Shaping the Understanding of Plant Defense Against Phloem-Feeding Aphids (open access)

Arabidopsis Thaliana--Myzus Persicae Interaction: Shaping the Understanding of Plant Defense Against Phloem-Feeding Aphids

This review article summarizes recent studies that have exploited the compatible interaction between Arabidopsis and the green peach aphid (GPA) to understand the molecular and physiological mechanisms utilized by plants to control aphid infestation, as well as genes and mechanisms that contribute to susceptibility.
Date: July 1, 2013
Creator: Louis, Joe & Shah, Jyoti
System: The UNT Digital Library
Ursolic acid in cancer prevention and treatment: Molecular targets, pharmacokinetics and clinical studies (open access)

Ursolic acid in cancer prevention and treatment: Molecular targets, pharmacokinetics and clinical studies

Article on ursolic acid in cancer prevention and treatment and molecular targets, pharmacokinetics and clinical studies.
Date: June 1, 2013
Creator: Shanmugam, Muthu K.; Dai, Xiaoyun; Kumar, Alan Prem; Tan, Benny K-H; Sethi, Gautam & Bishayee, Anupam
System: The UNT Digital Library
Modelling spatial concordance between Rocky Mountain spotted fever disease incidence and habitat probability of its vector Dermacentor variabilis (American dog tick) (open access)

Modelling spatial concordance between Rocky Mountain spotted fever disease incidence and habitat probability of its vector Dermacentor variabilis (American dog tick)

This article reports on the development and comparison of two maps of Texas related to Rocky Mountain spotted fever.
Date: November 1, 2012
Creator: Atkinson, Samuel F.; Sarkar, Sahotra; Avina, Aldo; Schuermann, Jim A. & Williamson, Phillip C.
System: The UNT Digital Library
Effect of selection for commercially productive traits on the plasticity of cardiovascular regulation in chicken breeds during embryonic development (open access)

Effect of selection for commercially productive traits on the plasticity of cardiovascular regulation in chicken breeds during embryonic development

Article investigates basic cardiovascular physiology in the Red Junglefowl, the broiler, and the White Leghorn breeds at 90% of incubation. The authors aimed to identify breed-specific features of arterial blood pressure and heart rate as well as the physiological mechanisms regulating them. They concluded that selection for rapid growth shifts cardiovascular regulatory plasticity to emphasize mechanisms that modulate pressure, and that selection for egg-laying capacity emphasizes mechanisms that modulate heart rate.
Date: October 1, 2012
Creator: Crossley, Dane A., II & Altimiras, J.
System: The UNT Digital Library
Response to: Use of prior odds for missing persons identifications - author's reply (open access)

Response to: Use of prior odds for missing persons identifications - author's reply

This article is in response to an authors' reply to 'Use of prior odds for missing persons identifications.' This response is to the reply by Alex Biedermann, Franco Taroni, and Pierre Margot.
Date: February 1, 2012
Creator: Budowle, Bruce; Ge, Jianye; Chakraborty, Ranajit & Gill-King, Harrell
System: The UNT Digital Library
Coprologic survey of endoparasites from Darwin’s fox (Pseudalopex fulvipes) in Chiloé, Chile (open access)

Coprologic survey of endoparasites from Darwin’s fox (Pseudalopex fulvipes) in Chiloé, Chile

Article on parasite presence in the critically endangered Darwin's fox (Pseudalopex fulvipes) in Chile. Parasites found include species and genera reported for the first time in Darwin's fox.
Date: January 1, 2012
Creator: Jiménez, Jaime E.; Briceño, C.; Alcaíno, H.; Vásquez, P.; Funk, S. & González-Acuña, D.
System: The UNT Digital Library
Upper lethal temperatures of Northern Bobwhite embryos and the thermal properties of their eggs (open access)

Upper lethal temperatures of Northern Bobwhite embryos and the thermal properties of their eggs

This article explores the upper lethal temperature for Bobwhite eggs. Results find that thermal tolerances of Northern Bobwhite embryos are high, indicating an adaptation to the naturally occurring temperature extremes in the Bobwhite's environment. However, the results also indicate that high temperatures could have plausibly contributed to the population decline observed in the Bobwhite's semi-arid range.
Date: January 1, 2012
Creator: Reyna, Kelly S. & Burggren, Warren W.
System: The UNT Digital Library
Pulmonary compliance and lung volume varies with ecomorphology in anuran amphibians: implications for ventilatory-assisted lymph flux (open access)

Pulmonary compliance and lung volume varies with ecomorphology in anuran amphibians: implications for ventilatory-assisted lymph flux

This article examining the correlation between pulmonary compliance, lung volume, and lymph flux rates in anurans. The findings of this article suggest that lymph mobilization capacity may explain some of the variation in pulmonary compliance and lung volume in anurans.
Date: October 1, 2011
Creator: Hedrick, Michael; Hillman, Stanley S.; Drewes, Robert C. & Withers, Philip C.
System: The UNT Digital Library
NPP-16/Nup50 Function and CDK-1 Inactivation Are Associated with Anoxia-induced Prophase Arrest in Caenorhabditis elgans (open access)

NPP-16/Nup50 Function and CDK-1 Inactivation Are Associated with Anoxia-induced Prophase Arrest in Caenorhabditis elgans

Article discussing how NPP-16/Nup50 function and CDK-1 inactivation are associated with anoxia-induced prophase arrest in Caenorhabditis elegans.
Date: March 1, 2010
Creator: Hajeri, Vinita A.; Little, Brent A.; Ladage, Mary L. & Padilla, Pamela A.
System: The UNT Digital Library