In this work, the development of parameters for a series of imidazolium-based ionic liquids molecules, now included in the AMOEBA force field, is discussed. The quality of obtained parameters is tested in a variety of calculations to reproduce structural, thermodynamic, and transport properties. First, it is proposed a novel method to parameterize in a faster, and more efficient way parameters for the AMOEBA force field that can be applied to any imidazolim-based cation. Second, AMOEBA-IL polarizable force field is applied to study the N-tert-butyloxycarbonylation of aniline reaction mechanism in water/[EMIM][BF4] solvent via QM/MM approach and compared with the reaction carried out in gas-phase and implicit solvent media. Third, AMOEBA-IL force field is applied in alchemical calculations. Free energies of solvation for selected solutes solvated in [EMIm][OTf] are calculated via BAR method implemented in TINKER considering the effect of polarization as well as the methodology to perform the sampling of the alchemical process. Finally, QM/MM calculations using AMOEBA to get more insights into the catalytic reaction mechanism of horseradish peroxidase enzyme, particularly the structures involved in the transition from Cp I to Cp II.

The dissertation covers three major topics: metal-assisted aromaticity, synthetic approaches to tailor donor-acceptor supramolecular stacks, and photoluminescence properties of cyclic trinuclear complexes (CTCs) of d10 metals. First, multiple theoretical approaches are adapted to discuss in detail the origin of aromaticity of CTCs, putting forward a metal-assisted aromaticity model. Next are the discoveries of donor-acceptor stacked CTC–CTC' complexes from both experimental and computational perspectives, reporting multiple novel crystallography-determined structures and revealing their pertinent intermolecular ground-state charge transfer. The spontaneous binding behavior is also determined by UV-vis and NMR titrations and rationalized as the cooperation of multiple supramolecular interactions, including metallophilicity, electrostatic attraction, and dispersion. The last part includes systematic investigations of photoluminescence properties of halogen-metal-bonded CTCs and sandwich-like cation–π-bonded heptanuclear clusters based on CTCs. The cooperative effects of metal-centered conformation, the heavy-atom and relativistic effects from both the halogen and metal atoms play complementary roles in the phosphorescence process to promote the inter-system crossing and radiative transitions.

Opioid abuse and in particular fentanyl, a synthetic opioid, has been of concern in the last decade. Fentanyl is an illicit drug of concern to due to its prevalence and potency. Research to date has focused on supporting law enforcement by developing methods suitable for chemical profiling and identifying fentanyl from various matrices. However, methods geared towards analysis of fentanyl isomeric analogues are rare. Analysis of isomers is challenging due to similar mass spectral fragmentation patterns and exhibiting co-elution using common gas chromatographic columns. Developing methods to use in forensic labs utilizing already available equipment will advance current capabilities in the detection of fentanyl compounds. Thus, investigation into alternative stationary phases and development of special gas-liquid chromatographic (GLC) based methods for isomeric fentanyl analogues has been done. Several studies were done to investigate the use of ionic liquid chromatographic phases in analyzing fentanyl analogues. The first study focused on investigating the thermal stability of ionic liquids to identify those suitable to withstand the high oven temperatures that was needed to elute fentanyl analogues in gas chromatography. Total synchronous fluorescence spectroscopy and differential scanning calorimetry were demonstrated to be sensitive enough to detect the decomposition products of ionic liquids. In the …

In this study, thiol and two disulfide compounds have been tested as new corrosion inhibitors for brass and aluminum alloys. Pyridine-2-thiol and 2,2'-dipyridyl disulfide were tested for brass alloys in 0.5 M H2SO4 solution and both inhibitors showed excellent corrosion protection against the aggressive corrosive ion attack. Both inhibitors adsorbed to brass surface forming a protective film via a chemisorption process. XPS studies showed formation of Cu-S bond which allows these molecules to chemisorb on to brass surfaces. Pyridine-2-thiol, 2,2'-dipyridyl disulfide and 4'4-diaminodiphenyl disulfide were tested as corrosion inhibitors for AA6061-T6 alloy in 1 M HCl solution and all inhibitors showed excellent corrosion protection over wide range of temperatures. To evaluate the corrosion inhibition efficiencies many different instruments and electrochemical techniques were used. Overall results from this study showed sulfur-based corrosion inhibitors can be used effectively to mitigate the corrosion process of brass and aluminum alloys in acidic solutions.

The porous materials discussed in this dissertation are metal-organic frameworks (MOFs) and porous liquids. Due to their high surface areas, tunable structures, and controllable porosities, MOFs have been explored for a wide variety of drug delivery applications. In chapter 2, MOFs have been used as magnetothermal-triggered release carriers through spatially distributed iron oxide nanoparticles within MOF matrix as a magnetic heating mediator and surface-grafted thermal-responsive nanocap as an alternating magnetic field (AMF)-responsive gatekeepers, achieving monitoring of drug release via external AMF by a conformational change of nanocap. In chapter 3, MOF, as a non-toxic loading carrier, encapsulate naringin, a natural product to serve as a multifunctional bio-platform capable of treating Gram-positive bacteria and certain cancers by slowly and progressively releasing the encapsulated naringin as well as improving and modulating immune system functions through the synergies between naringin and MOF. In chapter 4, porous liquid with unique solvent-free fluidity properties as a drug delivery platform for the first time. The interaction between hollow silica nanoparticle and polymerized ionic liquid, followed by ionic grafting brush of poly (ethylene glycol) telomer, makes this designed porous liquid responsible for high drug-loading and pH-responsive drug-releasing abilities along with slow degradation behavior. In addition to their …

Nanofluidic is an emerging field of applying fluid properties in nanochannels or nanostructures. The nanoporous channel with a pore size of less than 100 nm will strongly affect the motion of the fluid. Meanwhile, the pore environment, such as hydrophilic and hydrophobic properties, charge density, and host-guest recognition would be crucial for the transportation of molecules and ions in the pore. This thesis is focused on the synthesis, characterization of nanofluidic membranes and their applications to reverse electrodialysis. Chapter 1 focuses on the importance and objective of this work. Chapter 2 gives an overview of nanofluidic and classical nanofluidic structure–covalent organic frameworks (COFs). In Chapter 3, a series of COFs membranes with different surface charge densities were designed by employing a multivariate (MTV) strategy. A volcano-like relationship between the surface charge density and output power density was observed when the membranes were applied for osmotic energy harvesting. Chapter 4 integrates the temperature gradient to the covalent organic frameworks nanofluidic system to further explain the thermophoretic mobility of ions. The recorded osmotic energy production density was obtained while ion concentration polarization was alleviated with increasing hydrodynamic convection effects. In Chapter 5, a coupled photon-electron-ion transport behavior across ionic covalent organic framework …

In this thesis, micro-mechanical properties and corrosion resistance of laser powder bed fusion (L-PBF) processed additive manufactured (AM) 316L stainless steel parts were investigated for different combinations of processing parameters. Various laser powers were employed for the fabrication of all AM 316L stainless steel parts. Nanoindentation, areal roughness, and electron backscattered diffraction (EBSD) characterization were used to characterize the surface of the AM samples prior to corrosion testing. Open circuit potential (OCP), linear polarization resistance (LPR), electrochemical impedance spectroscopy (EIS), and potentiodynamic polarization tests were done to compare AM L-PBF 316L stainless steels with different processing parameters. Overall, it was observed that the AM part having a 56.67 J/mm3 volumetric energy density (VED) exhibits the best micro-mechanical characteristics. This sample also had the lowest areal surface roughness and smallest grain size. Consequently, this parameter combination had better corrosion resistance compared to the other AM processed 316L parts. The results are useful in process calibration when fabricating for corrosion resistance applications and provide insights into the relationship among nano-mechanical, crystallography, and long-term corrosion performance.

The Túngara frog (Engystomops pustulosus) from Central America creates a bio-foam that protects their young from dehydration, microbial degradation, and even predators during early development. The foam is composed of unique proteins known as Ranaspumin 1-6 (RSN 1-6). These RSN proteins have been synthetically synthesized and verified with Circular Dichroism (CD) to determine their critical micelle concentration, antimicrobial properties, and stability at varying temperatures and pH ranges. Throughout these characterizations, RSN 2 was determined to establish/produce antimicrobial properties, express stability at temperatures between 20 – 60oC, and express stability at a pH range of 5-8. Therefore, RSN 2 was isolated and utilized for medical and environmental applications. With the addition of RSN 2, the separation of aromatics was achieved in tar-sands with the assistance of a Tangential Flow Filtration (TFF) system. With only three passes through the TFF system, the RSN 2 solution isolated approximately 35% of the aliphatic region, and approximately 70% of the aromatic region. Finally, RSN 2 was implemented into an organ preservation solution for organ transplant surgery. By observing two different biomarkers, including Cardiolipin (CL) and alkali metals/alkaline earth metals for a change in concentration to verify organ viability. Resulting in the RSN 2 solution as …