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Deep learning for peptide identification from metaproteomics datasets (open access)

Deep learning for peptide identification from metaproteomics datasets

This article explores a proposed deep-learning-based algorithm called DeepFilter for improving peptide identifications from a collection of tandem mass spectra. The authors find that DeepFilter is believed to generalize properly to new, previously unseen peptide-spectrum-matches and can be readily applied in peptide identification from metaproteomics data.
Date: July 8, 2021
Creator: Feng, Shichao; Sterzenbach, Ryan & Guo, Xuan
Object Type: Article
System: The UNT Digital Library
Weak-Light Image Enhancement Method Based on Adaptive Local Gamma Transform and Color Compensation (open access)

Weak-Light Image Enhancement Method Based on Adaptive Local Gamma Transform and Color Compensation

This article proposes a correction method for image enhancement models based on an adaptive local gamma transformation and color compensation inspired by the illumination reflection model. It is demonstrated that the proposed method adaptively reduces the influence of uneven illumination to avoid overenhancement and improves the visual effect of low-light images.
Date: June 25, 2021
Creator: Wang, Wencheng; Yuan, Xiaohui; Chen, Zhenxue; Wu, Xiaojin & Gao, Zairui
Object Type: Article
System: The UNT Digital Library
A smartphone-based online system for fall detection with alert notifications and contextual information of real-life falls (open access)

A smartphone-based online system for fall detection with alert notifications and contextual information of real-life falls

This article presents the results of a prospective study investigating a proof-of-concept, smartphone-based, online system for fall detection and notification. Apart from functioning as a practical fall monitoring instrument, this system may serve as a valuable research tool, enable future studies to scale their ability to capture fall-related data, and help researchers and clinicians to investigate real-falls.
Date: August 10, 2021
Creator: Harari, Yaar; Shawen, Nicholas; Mummidisetty, Chaithanya K.; Albert, Mark & Kording, Konrad P.
Object Type: Article
System: The UNT Digital Library
Using a microprocessor knee (C-Leg) with appropriate foot transitioned individuals with dysvascular transfemoral amputations to higher performance levels: a longitudinal randomized clinical trial (open access)

Using a microprocessor knee (C-Leg) with appropriate foot transitioned individuals with dysvascular transfemoral amputations to higher performance levels: a longitudinal randomized clinical trial

Article evaluating whether advanced prostheses can provide better safety and performance capabilities to maintain and improve quality of life in individuals who are predominantly designated MFCL level K2. This study used a 13 month longitudinal clinical trial to determine the benefits of using a C-Leg and 1M10 foot in individuals at K2 level with transfemoral amputation due to vascular disease.
Date: May 25, 2021
Creator: Jayaraman, Chandrasekaran; Mummidisetty, Chaithanya K.; Albert, Mark; Lipschutz, Robert; Hoppe-Ludwig, Shenan; Mathur, Gayatri et al.
Object Type: Article
System: The UNT Digital Library
Artificial Intelligence for Colonoscopy: Past, Present, and Future (open access)

Artificial Intelligence for Colonoscopy: Past, Present, and Future

Article summarizing the past and present development of colonoscopy video analysis methods, focusing on two categories of artificial intelligence (AI) technologies used in clinical trials, (1) analysis and feedback for improving colonoscopy quality and (2) detection of abnormalities.
Date: August 2021
Creator: Tavanapong, Wallapak; Oh, JungHwan; Riegler, Michael; Khaleel, Mohammed I.; Mitta, Bhuvan & de Groen, Piet C.
Object Type: Article
System: The UNT Digital Library
Identifying Degree and Sources of Non-Determinism in MPI Applications Via Graph Kernels (open access)

Identifying Degree and Sources of Non-Determinism in MPI Applications Via Graph Kernels

This article proposes a software framework for identifying the percentage and sources of communication non-determinism.
Date: May 18, 2021
Creator: Chapp, Dylan; Tan, Nigel; Bhowmick, Sanjukta & Taufer, Michela
Object Type: Article
System: The UNT Digital Library
Design and Assessment of a Task-Driven Introductory Data Science Course Taught Concurrently in Multiple Languages: Python, R, and MATLAB (open access)

Design and Assessment of a Task-Driven Introductory Data Science Course Taught Concurrently in Multiple Languages: Python, R, and MATLAB

This article is from the 26th ACM Conference on Innovation and Technology in Computer Science Education and discusses the design, effectiveness, and curricular impacts of an introductory data science course focused on practical programming skills and allowing students to concurrently complete the course in Python, R, or MATLAB. Students indicated a preference for the multi-language course design and the course became the recommended first programming course for a newly developed and approved undergraduate data science majors.
Date: June 26, 2021
Creator: Xiao, Ting; Greenberg, Ronald I. & Albert, Mark
Object Type: Article
System: The UNT Digital Library
Personal Internet of Things (PIoT): What Is It Exactly? (open access)

Personal Internet of Things (PIoT): What Is It Exactly?

This article provides a big picture of PIoT architecture, vision, and future research scope. The exploratory study of PIoT is in its infancy, which will explore the expansion of new use cases, service requirements, and the proliferation of PIoT devices. This is a preprint version of this article.
Date: May 14, 2021
Creator: Sahoo, Biswa P. S.; Mohanty, Saraju P.; Puthal, Deepak & Pillai, Prashant
Object Type: Article
System: The UNT Digital Library
On Comparing the Similarity and Dissimilarity Between Two Distinct Vehicular Trajectories (open access)

On Comparing the Similarity and Dissimilarity Between Two Distinct Vehicular Trajectories

This article studies the problem of comparing the similarity and dissimilarity between two distinct vehicular trajectories by proposing an adjacency-based metric. This approach has a broad application in building truthfulness by comparing the similarity between two vehicles and evaluating the dissimilarity between two distinct paths in hazardous materials transportation.
Date: February 23, 2021
Creator: Qingge, Letu; Zhou, Peng; Dai, Lihui; Yang, Qing & Zhu, Binhai
Object Type: Article
System: The UNT Digital Library
PhenoGeneRanker: Gene and Phenotype Prioritization Using Multiplex Heterogeneous Networks (open access)

PhenoGeneRanker: Gene and Phenotype Prioritization Using Multiplex Heterogeneous Networks

Article
Date: July 20, 2021
Creator: Dursun, Cagatay; Kwitek, Anne E. & Bozdag, Serdar
Object Type: Article
System: The UNT Digital Library
Unsupervised learning in images and audio to produce neural receptive fields: a primer and accessible notebook (open access)

Unsupervised learning in images and audio to produce neural receptive fields: a primer and accessible notebook

This article presents a consolidated review of Independent Component Analysis (ICA) as an efficient neural coding scheme with the ability to model early visual and auditory neural processing.
Date: October 19, 2021
Creator: Urs, Namratha; Behpour, Sahar; Georgaras, Angie & Albert, Mark
Object Type: Article
System: The UNT Digital Library
Measuring the impact of suspending Umrah, a global mass gathering in Saudi Arabia on the COVID‑19 pandemic (open access)

Measuring the impact of suspending Umrah, a global mass gathering in Saudi Arabia on the COVID‑19 pandemic

This article uses a stratified SEIR epidemic model to evaluate the impact of Umrah, a global Muslim pilgrimage to Mecca, on the spread of the COVID-19 pandemic during the month of Ramadan, the peak of the Umrah season. The analyses provide insights into the effects of global mass gatherings on the progression of the COVID-19 pandemic locally and globally.
Date: September 6, 2021
Creator: Alshammari, Sultanah M.; Almutiry, Waleed K.; Gwalani, Harsha; Algarni, Saeed M. & Saeedi, Kawther
Object Type: Article
System: The UNT Digital Library
Classifying Abdominal Fat Distribution Patterns by Using Body Measurement Data (open access)

Classifying Abdominal Fat Distribution Patterns by Using Body Measurement Data

This article aims to explore new categorization that characterizes the distribution clusters of visceral and subcutaneous adipose tissues (VAT and SAT) measured by magnetic resonance imaging (MRI), to analyze the relationship between the VAT-SAT distribution patterns and the novel body shape descriptors (BSDs), and to develop a classifier to predict the fat distribution clusters using the BSDs.
Date: February 19, 2021
Creator: Sun, Jingjing; Xu, Bugao; Lee, Jane & Freeland-Graves, Jeanne H.
Object Type: Article
System: The UNT Digital Library
Natlog: a Lightweight Logic Programming Language with a Neuro-symbolic Touch (open access)

Natlog: a Lightweight Logic Programming Language with a Neuro-symbolic Touch

Article that introduces Natlog, a lightweight Logic Programming language, sharing Prolog's unification-driven execution model, but with a simplified syntax and semantics. The authors' proof-of-concept Natlog implementation is tightly embedded in the Python-based deep-learning ecosystem with focus on content-driven indexing of ground term datasets. As an overriding of the authors symbolic indexing algorithm, the same function can be delegated to a neural network, serving ground facts to Natlog's resolution engine. The open-source implementation is available as a Python package at t https://pypi.org/project/natlog/.
Date: September 17, 2021
Creator: Tarau, Paul
Object Type: Article
System: The UNT Digital Library
SSOR Preconditioned Gauss-Seidel Detection and Its Hardware Architecture for 5G and beyond Massive MIMO Networks (open access)

SSOR Preconditioned Gauss-Seidel Detection and Its Hardware Architecture for 5G and beyond Massive MIMO Networks

This article proposes a novel preconditioned and accelerated Gauss–Siedel algorithm referred to as Symmetric Successive Overrelaxation Preconditioned Gauss-Seidel (SSORGS) to address the signal detection challenges associated with massive MIMO technology.
Date: March 1, 2021
Creator: Chataut, Robin; Akl, Robert G.; Dey, Utpal Kumar & Robaei, Mohammadreza
Object Type: Article
System: The UNT Digital Library
Collaborative Research: Framework Implementations: CSSI: CANDY: Cyberinfrastructure for Accelerating Innovation in Network Dynamics (open access)

Collaborative Research: Framework Implementations: CSSI: CANDY: Cyberinfrastructure for Accelerating Innovation in Network Dynamics

Data management for the grant, "Collaborative Research: Framework Implementations: CSSI: CANDY: Cyberinfrastructure for Accelerating Innovation in Network Dynamics." Research addressing the lack of a comprehensive cyberinfrastructure that supports innovative research challenges in large-scale, complex, dynamic networks by developing a novel platform, called CANDY (Cyberinfrastructure for Accelerating Innovation in Network Dynamics), based on efficient, scalable parallel algorithm design for dynamic networks and high-performance software development with performance optimization.
Date: 2021-09-01/2025-08-31
Creator: Bhowmick, Sanjukta
Object Type: Text
System: The UNT Digital Library
Event-Driven Deep Learning for Edge Intelligence (EDL-EI) (open access)

Event-Driven Deep Learning for Edge Intelligence (EDL-EI)

Article on deep-learning framework for edge intelligence EDL-EI (event-driven deep learning for edge intelligence). To verify the proposed framework, the authors include a case study of air-quality scenarios based for the most polluted cities in South Korea and China.
Date: September 8, 2021
Creator: Shah, Sayed Khushal; Tariq, Zeenat; Lee, Jeehwan & Lee, Yugyung
Object Type: Article
System: The UNT Digital Library
2021 NCAE-C-002 University of North Texas (open access)

2021 NCAE-C-002 University of North Texas

Data management plan for the grant "2021 NCAE-C-002 University of North Texas."
Date: 2021-09-22/2024-12-31
Creator: Dantu, Ram
Object Type: Text
System: The UNT Digital Library
Evaluating spatial patterns of seasonal ozone exposure and incidence of respiratory emergency room visits in Dallas-Fort Worth (open access)

Evaluating spatial patterns of seasonal ozone exposure and incidence of respiratory emergency room visits in Dallas-Fort Worth

This article examines the relationships between spatial patterns of long-term ozone exposure and respiratory illness within Dallas-Fort Worth to better understand impacts on health outcomes.
Date: April 13, 2021
Creator: Northeim, Kari; Marks, Constant & Tiwari, Chetan
Object Type: Article
System: The UNT Digital Library
Research Experiences for Undergraduates Site: Interdisciplinary Research Experience on Accelerated Deep Learning through A Hardware-Software Collaborative Approach (open access)

Research Experiences for Undergraduates Site: Interdisciplinary Research Experience on Accelerated Deep Learning through A Hardware-Software Collaborative Approach

Data management plan for the grant, "REU Site: Interdisciplinary Research Experience on Accelerated Deep Learning through A Hardware-Software Collaborative Approach." This Research Experiences for Undergraduates (REU) Site Program at the University of North Texas will enhance the knowledge and research skills of a diverse cohort of undergraduate students through empowering, innovative, and interdisciplinary research experiences in developing Deep Learning applications and systems. The program aims to 1) expose undergraduate students to real-world and cutting-edge research focused on accelerated deep learning through combined hardware and software development; 2) encourage more undergraduate students to continue their academic careers and seek graduate degrees in computer science, computer engineering, and related disciplines; 3) develop research skills and improve communication and collaborative skills in undergraduate students.
Date: 2021-03-01/2024-02-29
Creator: Zhao, Hui & Albert, Mark
Object Type: Text
System: The UNT Digital Library
CAREER: Reinventing Network-on-Chips of GPU-Accelerated Systems (open access)

CAREER: Reinventing Network-on-Chips of GPU-Accelerated Systems

Data management plan for the grant, "CAREER: Reinventing Network-on-Chips of GPU-Accelerated Systems." Research seeking to reinvent on-chip networks for GPU-accelerated systems to remove a communication bottleneck. A major outcome of the project is a set of techniques that enable the development of effective and efficient network-on-chip architectures. Graphics processing units (GPUs) have rapidly evolved to become high-performance accelerators for data-parallel computing. To fully take advantage of the computing power of GPUs, on-chip networks need to provide timely data movement to satisfy the requests of data by the processing cores. Currently, there exists a big gap between the fast-growing processing power of the GPU processing cores and the slow-increasing on-chip network bandwidth. Because of this, GPU-accelerated systems are interconnect-dominated and the on-chip network becomes their performance bottleneck.
Date: 2021-06-01/2026-05-31
Creator: Zhao, Hui
Object Type: Text
System: The UNT Digital Library
Detection of Parkinson's Disease Through Automated Pupil Tracking of the Post-illumination Pupillary Response (open access)

Detection of Parkinson's Disease Through Automated Pupil Tracking of the Post-illumination Pupillary Response

This article describes a system for pupil size estimation with a user interface to allow rapid adjustment of parameters and extraction of pupil parameters of interest in order to identify Parkinson's disease (PD) as early as possible.
Date: March 25, 2021
Creator: Tabashum, Thasina; Zaffer, Adnaan; Yousefzai, Raman; Colletta, Kalea; Jost, Mary Beth; Park, Youngsook et al.
Object Type: Article
System: The UNT Digital Library
Protein functional module identification method combining topological features and gene expression data (open access)

Protein functional module identification method combining topological features and gene expression data

Article conducting an intensive study on the problems of low recognition efficiency and noise in the overlapping structure of protein functional modules, based on topological characteristics of PPI network. Developing a protein function module recognition method ECTG based on Topological Features and Gene expression data for Protein Complex Identification. The experimental results show that the ECTG algorithm can detect protein functional modules better.
Date: June 8, 2021
Creator: Zhao, Zihao; Xu, Wenjun; Chen, Aiwen; Han, Yueyue; Xia, Shengrong; Xiang, ChuLei et al.
Object Type: Article
System: The UNT Digital Library
Vector mosquito image classification using novel RIFS feature selection and machine learning models for disease epidemiology (open access)

Vector mosquito image classification using novel RIFS feature selection and machine learning models for disease epidemiology

Article proposes a Machine Learning (ML) and Deep Learning based system to detect the presence of two critical disease spreading classes of mosquitoes in order to prevent mosquito-borne infection.
Date: December 21, 2021
Creator: Rustam, Furqan; Reshi, Aijaz Ahmad; Aljedaani, Wajdi; Alhossan, Abdulaziz; Ishaq, Abid; Shafi, Shabana et al.
Object Type: Article
System: The UNT Digital Library