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Microkinetic coagulation assays for human and zebrafish plasma (open access)

Microkinetic coagulation assays for human and zebrafish plasma

This article creates a microkinetic assay for human and zebrafish plasmas using 1 μl plasma under conditions similar to prothrombin time (PT) and partial thromboplastin time (PTTs). The established microkinetic assay could measure blood coagulation activity in models like zebrafish and human blood samples obtained from a finger prick in adults or heel prick in infants.
Date: January 2021
Creator: Iyer, Neha & Jagadeeswaran, Pudur
Object Type: Article
System: The UNT Digital Library
Exposure to diesel exhaust particles results in altered lung microbial profiles, associated with increased reactive oxygen species/reactive nitrogen species and inflammation, in C57Bl/6 wildtype mice on a high-fat diet (open access)

Exposure to diesel exhaust particles results in altered lung microbial profiles, associated with increased reactive oxygen species/reactive nitrogen species and inflammation, in C57Bl/6 wildtype mice on a high-fat diet

Article investigating if the exposure to diesel exhaust particles (DEP) can alter commensal lung microbiota, thereby promoting alterations in the lung’s immune and inflammatory responses. This article also explores if diet contributes to the alteration of the commensal lung microbiome.
Date: January 8, 2021
Creator: Daniel, Sarah; Phillippi, Danielle; Schneider, Leah J.; Nguyen, Kayla N.; Mirpuri, Julie & Lund, Amie K.
Object Type: Article
System: The UNT Digital Library
A rapid thioacidolysis method for biomass lignin composition and tricin analysis (open access)

A rapid thioacidolysis method for biomass lignin composition and tricin analysis

This article developed a modified, rapid higher throughput thioacidolysis method to analyze both lignin monomeric composition and tricin content in the lignin polymer. The results demonstrate that the modified method can be used for rapid, high-throughput, and reliable lignin composition and tricin content analyses for screening transgenic plants for cell wall modifications or in large-scale genome-wide association studies (GWAS).
Date: January 11, 2021
Creator: Chen, Fang; Zhuo, Chunliu; Xiao, Xirong; Pendergast, Thomas H. & Devos, Katrien M.
Object Type: Article
System: The UNT Digital Library
Application of Genome Editing in Tomato Breeding: Mechanisms, Advances, and Prospects (open access)

Application of Genome Editing in Tomato Breeding: Mechanisms, Advances, and Prospects

This article is a review presenting examples of gene editing responsible for conferring both biotic and abiotic stresses in tomato simultaneously. The literature on using this powerful technology to improve fruit quality, yield, and nutritional aspects in tomato is highlighted.
Date: January 12, 2021
Creator: Salava, Hymavathi; Thula, Sravankumar; Mohan, Vijee; Kumar, Rahul & Maghuly, Fatemeh
Object Type: Article
System: The UNT Digital Library
Editorial Feature: Meet the PCP Editor—Ana Paula Alonso (open access)

Editorial Feature: Meet the PCP Editor—Ana Paula Alonso

This article is an editorial feature highlighting editor of Plant & Cell Physiology Dr. Ana Paula Alonso. She is currently an Associate Professor in the Department of Biological Sciences and serves as the Director of the BioAnalytical Facility at the University of North Texas.
Date: January 13, 2021
Creator: Alonso, Ana Paula
Object Type: Article
System: The UNT Digital Library
Phosphorus deprivation affects composition and spatial distribution of membrane lipids in legume nodules (open access)

Phosphorus deprivation affects composition and spatial distribution of membrane lipids in legume nodules

Article assessing membrane lipids in M. truncatula tissues using electrospray ionization–mass spectrometry. The results suggest that specific PC species may be differentially important in diverse nodule zones and cell types, and that membrane lipid remodeling during P stress is not uniform across the nodule.
Date: January 13, 2021
Creator: Dokwal, Dhiraj; Romsdahl, Trevor B.; Kunz, Daniel A.; Alonso, Ana Paula & Dickstein, Rebecca
Object Type: Article
System: The UNT Digital Library
Generating pathogen- / pest-resistant non-GMO cotton through targeted genome editing of oxylipin signaling pathways (open access)

Generating pathogen- / pest-resistant non-GMO cotton through targeted genome editing of oxylipin signaling pathways

Data management plan for the research grant "Generating pathogen- / pest-resistant non-GMO cotton through targeted genome editing of oxylipin signaling pathways."
Date: 2021-01-15/2024-01-14
Creator: Ayre, Brian G.; McGarry, Roisin C. & Shah, Jyoti
Object Type: Text
System: The UNT Digital Library
NSFDEB-NERC: Collaborative Research: Wildlife corridors: do they work and who benefits? (open access)

NSFDEB-NERC: Collaborative Research: Wildlife corridors: do they work and who benefits?

Data management plan for the grant, "NSFDEB-NERC: Collaborative Research: Wildlife corridors: do they work and who benefits?" Research on the impact of wildlife corridors using genetics as the measure of effectiveness. The study will use 20 independent landscapes to quantify how corridor traits affect gene flow, and will use non-flying mammals as focal species because they are strongly affected by fragmentation. The research team hypothesizes (1) a strong non-linear decline in success (gene flow) with corridor length, reflecting the skewed distribution of dispersal distances within species; (2) success will drop steeply as corridor width falls below a threshold, with the threshold determined by species traits; and (3) species that are bigger, are habitat specialists, or have greater dispersal abilities (relative to brain size or reproductive rate) will benefit more from corridors. Testing these hypotheses will allow generalization to a wide range of mammal species not included in this project. It will use highly flexible Random Forest models to answer the overarching question: What landscape traits (e.g., corridor width, degree of human disturbance) and species traits (mobility, affinity to particular land cover types) are associated with effective corridors?
Date: 2021-01-15/2023-12-31
Creator: Gregory, Andrew
Object Type: Text
System: The UNT Digital Library
Records of Parochlus steinenii in the Maritime Antarctic and sub-Antarctic regions (open access)

Records of Parochlus steinenii in the Maritime Antarctic and sub-Antarctic regions

This article provides the summary of the reports of the geographical distribution in the Maritime Antarctic and sub-Antarctic regions of Parochlus steinenii (Gercke, 1889) (Diptera, Chironomidae), the only flying insect occurring naturally in the Antarctic continent. This database was developed as one of the main objectives of two Chilean-funded research projects addressing understanding the effects of climate change on sub-Antarctic and Antarctic insects.
Date: January 18, 2021
Creator: Gañán, Melisa; Contador, Tamara; Rendoll, Javier; Simoes, Felipe; Pérez, Carolina; Graham, Gillian et al.
Object Type: Article
System: The UNT Digital Library
A Constrained Stochastic Weather Generator for Daily Mean Air Temperature and Precipitation (open access)

A Constrained Stochastic Weather Generator for Daily Mean Air Temperature and Precipitation

This article develops and tests a constrained stochastic weather generator (CSWG) for producing daily mean air temperature and precipitation based on annual mean air temperature and precipitation from tree-ring records. It presents a unique method that can be used to explore historic (e.g., archeological questions) or future (e.g., climate change) daily weather conditions based upon specified annual values.
Date: January 21, 2021
Creator: Pan, Feifei; Nagaoka, Lisa; Wolverton, Steven J.; Atkinson, Samuel F.; Kohler, Timothy A. & O'Neill, Marty
Object Type: Article
System: The UNT Digital Library
Production of tocotrienols in seeds of cotton (Gossypium hirsutum L.) enhances oxidative stability and offers nutraceutical potential (open access)

Production of tocotrienols in seeds of cotton (Gossypium hirsutum L.) enhances oxidative stability and offers nutraceutical potential

This article generates transgenic cotton lines expressing the barley (Hordeum vulgare) homogentisate geranylgeranyl transferase coding sequence under the control of the Brassica napus seed-specific promoter, napin. Findings may provide new opportunities for cottonseed co-products with enhanced vitamin E profile for improved shelf life and nutrition.
Date: January 25, 2021
Creator: Salimath, Shanmukh S.; Romsdahl, Trevor B.; Konda, Anji Reddy; Zhang, Wei; Cahoon, Edgar B.; Dowd, Michael K. et al.
Object Type: Article
System: The UNT Digital Library
The impact of multifactorial stress combination on plant growth and survival (open access)

The impact of multifactorial stress combination on plant growth and survival

Article studying seedlings of wild-type and different mutants of Arabidopsis thaliana plants subjected to a multifactorial stress combination of six different stresses, each applied at a low level, and their survival, physiological and molecular responses. Findings reveal that further polluting our environment could result in higher complexities of multifactorial stress combinations that in turn could drive a critical decline in plant growth and survival.
Date: January 26, 2021
Creator: Zandalinas, Sandra I.; Sengupta, Soham; Fritschi, Felix B.; Azad, Rajeev K.; Nechushtai, Rachel & Mittler, Ron
Object Type: Article
System: The UNT Digital Library
Multi-scale biodiversity drives temporal variability in macrosystems (open access)

Multi-scale biodiversity drives temporal variability in macrosystems

Article using decadal datasets that span aquatic and terrestrial macrosystems and structural equation modeling to show that local temporal variability and spatial synchrony increase temporal variability for entire macrosystems. This analysis is among the first to provide a quantitative argument for the value of regional species diversity.
Date: February 1, 2021
Creator: Patrick, Christopher J.; McCluney, Kevin E.; Ruhi, Albert; Gregory, Andrew; Sabo, John & Thorp, James H.
Object Type: Article
System: The UNT Digital Library
Toward Best Management Practices for Ecological Corridors (open access)

Toward Best Management Practices for Ecological Corridors

This article summarizes the best available information about managing ecological corridor systems. The aim with is to provide managers with a convenient guidance document and tool to assist in applying scientific management principles to management of corridors. It does not cover issues related to corridor design or political buy in, but focuses on how a corridor should be managed once it has been established.
Date: February 1, 2021
Creator: Gregory, Andrew; Spence, Emma; Beier, Paul & Garding, Emily
Object Type: Article
System: The UNT Digital Library
Abscisic acid regulates secondary cell-wall formation and lignin deposition in Arabidopsis thaliana through phosphorylation of NST1 (open access)

Abscisic acid regulates secondary cell-wall formation and lignin deposition in Arabidopsis thaliana through phosphorylation of NST1

Article using a combination of biochemical and genetic approaches to show how ABA can regulate lignin biosynthesis. This work provides a basis for designing trees and other biomass plants that are better adapted to stress and climate change. This article includes a correction on the first page.
Date: February 2, 2021
Creator: Liu, Chang; Yu, Hasi; Rao, Xiaolan; Li, Laigeng & Dixon, R. A.
Object Type: Article
System: The UNT Digital Library
Dissecting the transcriptional regulation of proanthocyanidin and anthocyanin biosynthesis in soybean (Glycine max) (open access)

Dissecting the transcriptional regulation of proanthocyanidin and anthocyanin biosynthesis in soybean (Glycine max)

This article analyzes the transcriptional control of PA and anthocyanin biosynthesis in soybean. Results show that engineered PA biosynthesis in soybean exhibits qualitative and spatial differences from the better-studied model systems Arabidopsis thaliana and Medicago truncatula, and suggest targets for engineering PAs in soybean plants.
Date: February 4, 2021
Creator: Lu, Nan; Rao, Xiaolan; Jun, Ji Hyung & Dixon, R. A.
Object Type: Article
System: The UNT Digital Library
The mitochondrial localized CISD-3.1/CISD-3.2 proteins are required to maintain normal germline structure and function in Caenorhabditis elegans (open access)

The mitochondrial localized CISD-3.1/CISD-3.2 proteins are required to maintain normal germline structure and function in Caenorhabditis elegans

Article isolating the cisd-3.2(pnIs68) mutant that resulted in physiological and fitness defects including germline abnormalities that are associated with abnormal stem cell niche and disrupted formation of bivalent chromosomes. Results further support the idea that the CISD protein family is required for mitochondrial function that supports important functions in animals including overall fitness and germline viability.
Date: February 5, 2021
Creator: King, Skylar D.; Gray, Chipo F.; Song, Luhua; Mittler, Ron & Padilla, Pamela A.
Object Type: Article
System: The UNT Digital Library
Survival, Growth, and Development in the Early Stages of the Tropical Gar Atractosteus tropicus: Developmental Critical Windows and the Influence of Temperature, Salinity, and Oxygen Availability (open access)

Survival, Growth, and Development in the Early Stages of the Tropical Gar Atractosteus tropicus: Developmental Critical Windows and the Influence of Temperature, Salinity, and Oxygen Availability

This article uses embryos and larvae of Atractosteus tropicus as a model to study fish survival, growth, and development as a function of temperature, salinity, and air saturation during developmental periods. Results suggest identifiable critical windows of development in the early ontogeny of A. tropicus and contribute to the knowledge of fish larval ecology and the interactions of individuals × stressors × time of exposure.
Date: February 12, 2021
Creator: Martínez, Gill; Peña, Emyr; Martínez, Rafael; Camarillo, Susana; Burggren, Warren W. & Álvarez, Alfonso
Object Type: Article
System: The UNT Digital Library
Targeting hydroxycinnamoyl CoA: shikimate hydroxycinnamoyl transferase for lignin modification in Brachypodium distachyon (open access)

Targeting hydroxycinnamoyl CoA: shikimate hydroxycinnamoyl transferase for lignin modification in Brachypodium distachyon

This article conducts a study to evaluate the utility of Hydroxycinnamoyl CoA: shikimate hydroxycinnamoyl transferase (HCT) as a target for lignin modification in a species with an “incomplete” shikimate shunt. Results imply that this gene is a preferred target for biotechnological improvement of grasses for bioprocessing.
Date: February 27, 2021
Creator: Serrani-Yarce, Juan Carlos; Escamilla-Treviño, Luis; Barros, Jaime; Gallego-Giraldo, Lina; Pu, Yunqiao; Ragauskas, Arthur J. (Arthur Jonas), 1957- et al.
Object Type: Article
System: The UNT Digital Library
Turning turtle: scaling relationships and self-righting ability in Chelydra serpentina (open access)

Turning turtle: scaling relationships and self-righting ability in Chelydra serpentina

Article investigating how shell morphology, neck length and self-righting biomechanics scale with body mass during ontogeny in Chelydra serpentina, which uses neck-powered self-righting.
Date: March 3, 2021
Creator: Ruhr, Ilan M.; Rose, Kayleigh A. R.; Sellers, William I.; Crossley, Dane A., II & Codd, Jonathan R.
Object Type: Article
System: The UNT Digital Library
Analyzing Mass Spectrometry Imaging Data of 13C-Labeled Phospholipids in Camelina sativa and Thlaspi arvense (Pennycress) Embryos (open access)

Analyzing Mass Spectrometry Imaging Data of 13C-Labeled Phospholipids in Camelina sativa and Thlaspi arvense (Pennycress) Embryos

This article uses currently available software and techniques to describe a workflow to analyze ¹³C-labeled isotopologues of the membrane lipid and storage oil lipid intermediate—phosphatidylcholine (PC). Results demonstrated greater ¹³C-isotopic labeling in the cotyledons of developing embryos compared with the embryonic axis.
Date: March 4, 2021
Creator: Romsdahl, Trevor B.; Kambhampati, Shrikaar; Koley, Somnath; Yadav, Umesh P.; Alonso, Ana Paula; Allen, Doug K. et al.
Object Type: Article
System: The UNT Digital Library
An Arabidopsis Oxalyl-CoA Decarboxylase, AtOXC, Is Important for Oxalate Catabolism in Plants (open access)

An Arabidopsis Oxalyl-CoA Decarboxylase, AtOXC, Is Important for Oxalate Catabolism in Plants

This article identifies, in Arabidopsis, an oxalyl-CoA decarboxylase (AtOXC) that is capable of catalyzing the second step in the proposed pathway of oxalate catabolism.
Date: March 23, 2021
Creator: Foster, Justin; Cheng, Ninghui; Paris, Vincent; Wang, Lingfei; Wang, Jin; Wang, Xiaoqiang et al.
Object Type: Article
System: The UNT Digital Library
Analysis of the potential behavioral impact of methanol when used as a solvent: Dataset from zebrafish (Danio rerio) behavioral research (open access)

Analysis of the potential behavioral impact of methanol when used as a solvent: Dataset from zebrafish (Danio rerio) behavioral research

This article is a dataset that describes behavioral results in zebrafish (Danio rerio) individually exposed to methanol, a solvent which is capable of altering physiology and behavior high concentrations.
Date: April 1, 2021
Creator: Hamilton, Trevor J.; Szaszkiewicz, Joshua; Krook, Jeffrey & Burggren, Warren W.
Object Type: Article
System: The UNT Digital Library
A cytoskeletal function for PBRM1 reading methylated microtubules (open access)

A cytoskeletal function for PBRM1 reading methylated microtubules

This article shows that that the coordinated read-write activity of the epigenetic machinery extends to the cytoskeleton, with PBRM1 in the PBAF chromatin remodeling complex reading microtubule methyl marks written by the SETD2 histone methyltransferase. This article opens a previously unknown window into how chromatin remodeler defects can drive disease via both epigenetic and cytoskeletal dysfunction.
Date: April 2, 2021
Creator: Karki, Menuka; Jangid, Rahul K.; Anish, Ramakrishnan; Seervai, Riyad N. H.; Bertocchio, Jean-Phillipe; Hotta, Takashi et al.
Object Type: Article
System: The UNT Digital Library