In recent years, the collection of genomic data has skyrocketed and databases of genomic data are growing at a faster rate than ever before. Although many computational methods have been developed to interpret these data, they tend to struggle to process the ever increasing file sizes that are being produced and fail to take advantage of the advances in multi-core processors by using parallel processing. In some instances, loss of accuracy has been a necessary trade off to allow faster computation of the data. This thesis discusses one such algorithm that has been developed and how changes were made to allow larger input file sizes and reduce the time required to achieve a result without sacrificing accuracy. An information entropy based algorithm was used as a basis to demonstrate these techniques. The algorithm dissects the distinctive patterns underlying genomic data efficiently requiring no a priori knowledge, and thus is applicable in a variety of biological research applications. This research describes how parallel processing and object-oriented programming techniques were used to process larger files in less time and achieve a more accurate result from the algorithm. Through object oriented techniques, the maximum allowable input file size was significantly increased from 200 …

GIS has been utilized in cultural resources management for decades, yet its application has been largely isolated to predicting the occurrence of archaeological sites. Federal and State agencies are required to protect archaeological sites that are discovered on their lands, but their resources and personnel are very limited. A new methodology is evaluated that uses modern light detection and ranging (LiDAR) and historic aerial photogrammetry to create digital terrain models (DTMs) capable of identifying sites that are most at risk of damage from changes in terrain. Results revealed that photogrammetric modeling of historic aerial imagery, with limitations, can be a useful decision making tool for cultural resources managers to prioritize conservation and monitoring efforts. An attempt to identify key environmental factors that would be indicative of future topographic changes did not reveal conclusive results. However, the methodology proposed has the potential to add an affordable temporal dimension to future digital terrain modeling and land management. Furthermore, the methods have global applicability because they can be utilized in any region with an arid environment.

Water scarcity for agriculture is one of the most important challenges to improve food security worldwide. In this thesis we study the potential to develop a low-cost controller for a small scale brackish desalination plant that consists of proven water treatment technologies, reverse osmosis, cation exchange, and nanofiltration to treat groundwater into two final products: drinking water and irrigation water. The plant is powered by a combination of wind and solar power systems. The low-cost controller uses Arduino Mega, and Arduino DUE, which consist of ATmega2560 and Atmel SAM3X8E ARM Cortex-M3 CPU microcontrollers. These are widely used systems characterized for good performance and low cost. However, Arduino also requires drivers and interfaces to allow the control and monitoring of sensors and actuators. The thesis explains the process, as well as the hardware and software implemented.

Shadows in indoor scenarios are usually characterized with multiple light sources that produce complex shadow patterns of a single object. Without removing shadow, the foreground object tends to be erroneously segmented. The inconsistent hue and intensity of shadows make automatic removal a challenging task. In this thesis, a dynamic thresholding and transfer learning-based method for removing shadows is proposed. The method suppresses light shadows with a dynamically computed threshold and removes dark shadows using an online learning strategy that is built upon a base classifier trained with manually annotated examples and refined with the automatically identified examples in the new videos. Experimental results demonstrate that despite variation of lighting conditions in videos our proposed method is able to adapt to the videos and remove shadows effectively. The sensitivity of shadow detection changes slightly with different confidence levels used in example selection for classifier retraining and high confidence level usually yields better performance with less retraining iterations.

The Renaissance Florentine Captain of the People began as a court, which defended the common people or popolo from the magnates and tried crimes such as assault, murder and fraud. This study reveals how factionalism, economic stress and the rise of citizen magistrate courts eroded the jurisdiction and ended the Court of the Captain. The creation of the Captain in 1250 occurred during the external fight for dominance between the Holy Roman Emperor and the Pope and the struggle between the Guelfs and Ghibellines within the city of Florence. The rise of the Ciompi in 1379, worried the Florentine aristocracy who believed the Ciompi was a threat to their power and they created the Otto di Guardia, a citizen magistrate court. This court began as a way to manage gaps in jurisdiction not covered by the Captain and his fellow rectors. However, by 1433 the Otto eroded the power of the Captain and his fellow rectors. Historians have argued that the Roman law jurists in this period became the tool for the aristocracy but in fact, the citizen magistrate courts acted as a source of power for the aristocracy. In the 1430s, the Albizzi and Medici fought for power. The …

Since 2008, the United States (USA) has resettled thousands of Bhutanese refugees, providing brief financial support and pathways to citizenship. Despite the efforts of governing bodies and voluntary agencies which facilitate resettlement, many refugees struggle with adapting to the vastly different lifestyle, economy, language and social structures. In particular, effectively addressing psychological needs of this population is a challenge for service providers operating within an expensive health care system based on Western constructs of mental health. In response to this challenge, refugee resettlement agencies throughout the country use community gardens to promote psychological healing, self-sufficiency, community engagement, and a return of human dignity. Though success of these programs is being shared in the media, there has yet to be empirical data examining their impact. The current study tested whether Bhutanese refugee engagement in a community garden impacts symptoms of depression, anxiety, PTSD and somatic complaints. The study also investigated whether community gardening is associated with perceptions of social support and adjustment to life in the United States. Quantitative and qualitative data was collected from 50 adult Bhutanese refugees in Fort Worth, Texas. Gardening was significantly related to increased social support overall, a key factor in overall functionality within communal cultures; …

This mixed methods research was conducted in the fall of 2014 to understand the perceptions and experiences of health risks and health outcomes due to pesticide exposure among community members (n=13) - concerned community members, agriculture workers and teachers- that live in the Central California agriculture counties of Monterey, Santa Cruz, Tulare, Fresno and Madera. This research explored: 1) The crops growing in participants’ communities, and how exposure to pesticides used in these crops pose potential health risks to participants and their communities 2) How pesticide exposure is impacting Hispanic/Latino communities in Central California, particularly those that are most vulnerable including school children, agriculture workers, and community members 3) The major public health concerns of impacted communities 4) Feelings of empowered to advocate for community health and environment and 5) What impacted communities wish to see on behalf of government and agribusiness to protect public health from pesticide exposure and toxins.

In retrospect we can see that from the last century, wireless electronic technology has been in a rapid state of development. With the popularity of wireless communication, the power amplifier demand is rising. In general, magnitude, maximum noise figure, minimum noise figure, efficiency, and output power are important indicators of the amplifier. The IC industry is exploring how to reduce the additional cost and improve the high-frequency performance. Therefore, designing a strong adaptability and high cost performance of the PA has become a priority. As these technologies advance, the power amplifiers need to have better integration, lower cost, and lower power dissipation. Also, some special requirements are being asked in some areas, such as multi-mode and multi-band. In general, people have to use several power amplifiers parallel to frame a multifunction chip. Each of them working at different frequencies of interest has to have separate matching network, design, and area; also, the diversity amplifier prices will increase with the number of amplifiers, and its cost is also changed. In this thesis, because Class E power amplifier has lower power dissipation, 100% ideal efficiency, simple circuit structure, and strong applicability, the Class E is used as power amplifier in main stage. …

Piezoelectricity crystal is used in different area in industry, such as downhole oil, gas industry, and ballistics. The piezoelectricity crystals are able to create electric fields due to mechanical deformation called the direct piezoelectric effect, or create mechanical deformation due to the effect of electric field called the indirect piezoelectric effect. In this thesis, piezoelectricity effect is the core part. There are 4 parts in the frequency output pressure transducer: two crystal oscillators, phase-locked loop (PLL), mixer, frequency counter. Crystal oscillator is used to activate the piezoelectricity crystal which is made from quartz. The resonance frequency of the piezoelectricity crystal will be increased with the higher pressure applied. The signal of the resonance frequency will be transmitted to the PLL. The function of the PLL is detect the frequency change in the input signal and makes the output of the PLL has the same frequency and same phase with the input signal. The output of the PLL will be transmitted to a Mixer. The mixer has two inputs and one output. One input signal is from the pressure crystal oscillator and another one is from the reference crystal oscillator. The frequency difference of the two signal will transmitted to the …

In this experiment, more than one hundred volatile organic compounds were analyzed with the gas chromatograph. Six capillary columns ZB wax plus, ZB 35, TR1MS, TR5, TG5MS and TG1301MS with different polarities have been used for separation of compounds and illicit drugs. The Abraham solvation model has five solute descriptors. The solute descriptors are E, S, A, B, L (or V). Based on the six stationary phases, six equations were constructed as a training set for each of the six columns. The six equations served to calculate the solute descriptors for a set of illicit drugs. Drugs studied are nicotine (S= 0.870, A= 0.000, B= 1.073), oxycodone(S= 2.564. A= 0.286, B= 1.706), methamphetamine (S= 0.297, A= 1.570, B= 1.009), heroin (S=2.224, A= 0.000, B= 2.136) and ketamine (S= 1.005, A= 0.000, B= 1.126). The solute property of Abraham solvation model is represented as a logarithm of retention time, thus the logarithm of experimental and calculated retention times is compared.

The purpose of this study was to examine the effect of post-resistance exercise alcohol ingestion on LPS-stimulated production of IFNγ, TNF-α, IL-1β, IL-6, IL-8, and IL-10. Recreationally resistance-trained men (n = 10, 25 ± 3 yr, 177 ± 7 cm, 83.8 ± 15.7 kg, 14.8 ± 8.5% body fat) and women (n = 8, 23 ± 2 yr, 161 ± 3 cm, 59.5 ± 6.0 kg, 26.5 ± 3.0% body fat) completed the study. Participants visited the laboratory for an initial visit at which time they were screened, familiarized with procedures, and had their 1-repetition maximum (1RM) back squat tested. Subsequently, participants visited the laboratory 2 more times and completed 2 identical heavy resistance exercise bouts (6 sets of 10 repetitions of 80% 1RM back squat) after which a beverage, either containing alcohol (alcohol condition, ALC; 1.09 g EtOH per kg fat free mass) or water (placebo condition, PLA), was administered. Blood samples were collected before exercise (PRE), and at 3 hours (3h) and 5 hours (5h) after exercise. Samples were stimulated with lipopolysaccharide (LPS) and cultured overnight. Supernatant was collected and analyzed for IFNγ, TNF-α, IL-1β, IL-6, IL-8, and IL-10. A significant (p < 0.05) main effect for time …

Discrete trial instruction (DTI) and naturalistic developmental behavioral interventions (NDBIs) are often incorporated into early intensive behavioral interventions for young children with autism. Recent advances in staff training methods have demonstrated that self-instructional manuals, video models, and computer-based training are effective and efficient ways to improve staff implementation of these teaching strategies however research in this area is limited. The current evaluation assessed the effects of a computer-based training package including self-instructional manuals with embedded video models on direct-care staff’s implementation of DTI and an NDBI. All participants’ DTI teaching fidelity increased during role-plays with an adult and with a child with autism and all participants increased teaching fidelity across untrained instructional programs. In addition, moderate improvement was demonstrated following NDBI training on the use of correct prompts, environmental arrangements, and response interaction. Together, these results indicate that therapists are able to acquire a large number of skills using two teaching techniques, DTI and NDBI, following brief computer-based training.

Over the last several decades, researchers have documented how impaired reasoning by adult offenders impeded the intelligent waiver of Miranda rights. Logically, it stands to reason that juveniles – who are developmentally less mature and have less life experience than their adult counterparts – would possess even greater impairment, thereby heightening their risk for invalid Miranda waivers. Juvenile Miranda research supports this notion; with some researchers finding that psychosocial maturity, among other factors, affect a juvenile’s understanding of their rights. Yet, relatively few studies have examined its relation to Miranda reasoning and decision-making. Thus, the current study investigated the specific role of maturity in juveniles’ Miranda comprehension and reasoning. Participants included 236 legally-involved juveniles recruited from either a juvenile detention center or a juvenile justice alternative education program. The effects of psychosocial maturity were examined on a variety of Miranda-related measures and assessed a broad range of Miranda abilities. It was found that, in general, immature juveniles performed more poorly on all Miranda measures as compared to their mature counterparts. However, the impact of maturity varied considerably depending on the ability. Specifically, maturity was most important in the context of Miranda reasoning. As a novel addition to the literature, the …

Multiple dimensions of biodiversity within and across producer and consumer guilds in the food web affect an ecosystem’s functionality and stability. Tropical and subtropical aquatic ecosystems, which are extremely diverse, have received much less attention than terrestrial ecosystems in regards to the effects of biodiversity on ecosystem functioning. We conducted a field experiment that tested for effects of macrophyte functional diversity on diversity and stability of associated fish assemblages in floodplain lakes of the Upper Paraná River floodplain, Brazil. Three levels of macrophyte functional diversity were maintained through time in five floodplain lakes and response variables included various components of fish taxonomic and functional diversity and stability. Components of functional diversity of fish assemblages were quantified using a suite of ecomorphological traits that relate to foraging and habitat use. Response variables primarily distinguished macrophyte treatments from the control. Macrophyte treatments had, on average, double the number of species and total abundance than the control treatment, but only limited effects on stability. The high diversity treatment was essentially nested within the low diversity for assemblage structure and had similar or even slightly lower levels of species richness and abundance in most cases. Gymnotiformes and young-of-year were diverse and relatively abundant in …

Rain gardens are low impact developments designed to mitigate a suite of issues associated with urban stormwater runoff. The site for this study was a Denton City rain garden at the Denton Waste Water Treatment Plant. Nitrogen and phosphorus removal was examined in light of two overflow events comprised of partially treated wastewater from an upslope anaerobic digester pond. Nitrate removal efficiency was examined across differing dry spell intervals of 5, 8, and 12 d, displaying a moderate negative correlation (r2 = 0.59). Continued phosphorus removal capacity was assessed, showing phosphorus removal in cases where P was in excess of 0.8 mg/L, reflecting an equilibrium phosphorus concentration. A high expanded shale component in the soil media (25%) was likely a factor in the continued removal of phosphorus. Overall the rain garden proved to be a large source of nitrate (+425%) and total nitrogen (+61%) by mass. The study showed that while the rain garden intercepted a large volume of partially treated wastewater during the overflow events, preventing it from reaching a nearby creek, the mitigation of an acute event has extended to a chronic one as nitrogen is gradually processed and flushed from the system as nitrate.

Bug Fixer is a web-based application that complements lectures with hands-on exercises that encourage students to think about the logic in programs. Bug Fixer presents students with code that has several bugs that they must fix. The process of fixing the bugs forces students to conceptually think about the code and reinforces their understanding of the logic behind algorithms. In this work, we conducted a study using Bug Fixer with undergraduate students in the CSCE1040 course at University of North Texas to evaluate whether the system increases their conceptual understanding of the algorithms and improves their Software Testing skills. Students participated in weekly activities to fix bugs in code. Most students enjoyed Bug Fixer and recommend the system for future use. Students typically reported a better understanding of the algorithms used in class. We observed a slight increase of passing grades for students who participated in our study compared to students in other sections of the course with the same instructor who did not participate in our study. The students who did not report a positive experience provide comments for future improvements that we plan to address in future work.

This thesis examines the policies and procedures created during and after the First World War that provided the foundation for how the United States commemorated its war dead for the next century. Many of the techniques used in modern times date back to the Great War. However, one hundred years earlier, America possessed very few methods or even ideas about how to locate, identify, repatriate, and honor its military personnel that died during foreign conflicts. These ideas were not conceived in the halls of government buildings. On the contrary, concerned citizens originated many of the concepts later codified by the American government. This paper draws extensively upon archival documents, newspapers, and published primary sources to trace the history of America’s burial and repatriation policies, the Army Graves Registration Services, and how American dead came to permanently rest in military cemeteries on the continent of Europe. The unprecedented dilemma of over 80,000 American soldiers buried in France and surrounding countries at the conclusion of the First World War in 1918 propelled the United States to solve many social, political, and military problems that arose over the final disposition of those remains. The solutions to those problems became the foundation for how …

The present study draws on recent sociological literature that argues that the study of cognition and culture can benefit from theories of embodied cognition. The concept of semantic internalization is introduced, which is conceptualized as the ability to perceive and articulate the topics that are of most concern to a community as they are manifested in social discourse. Semantic internalization is partly an application of emotional intelligence in the context of community-level discourse. Semantic internalization is measured through the application of Latent Semantic Analysis. Furthermore, it is investigated whether this ability is related to an individual’s social capital and habitus. The analysis is based on data collected from the online review platform yelp.com.

The current evaluation assessed the effectiveness of an intensive toilet training procedure for three young boys with autism. The evaluation extended the work of LeBlanc et al. (2005) by assessing parents’ preference to include the usage of urine alarm and positive practice. In addition, we collected descriptor data on challenging behaviors. All three parent participants’ elected not to use the urine alarm and one parent elected to discontinue the implementation of positive practice techniques. Researchers chose a nonconcurrent multiple baseline across participants design to evaluate the effects of the intervention. All three child participants’ increased successful self-initiations for the toilet and decreased accidents across home and clinic settings. Findings suggest that clinicians should partner with parents to develop individualized toileting interventions that are acceptable and effective.

Emissions of air pollutants from non-conventional sources have been on the rise in the North Texas area over the past decade. These include primary pollutants such as volatile organic compound (VOC) and oxides of nitrogen (NOx) which also act as precursors in the formation of ozone. Most of these have been attributed to a significant increase in oil and gas production activities since 2000 within the Barnett Shale region adjacent to the Dallas-Fort Worth metroplex region. In this study, air quality concentrations measured at the Denton Airport and Dallas Hinton monitoring sites operated by the Texas Commission on Environmental Quality (TCEQ) were evaluated. VOC concentration data from canister-based sampling along with continuous measurement of oxides of nitrogen (NOx), ozone (O3), particulate matter (PM2.5), and meteorological conditions at these two sites spanning from 2000 through 2014 were employed in this study. The Dallas site is located within the urban core of one of the fastest growing cities in the United States, while the Denton site is an exurban site with rural characteristics to it. The Denton Airport site was influenced by natural gas pads surrounding it while there are very few natural gas production facilities within close proximity to the Dallas …

BMA Innovation Consulting is committed to serving consumers products that can play a more meaningful role in household cleaning. So far, their innovation department has used psychology-based principles and approaches that have helped them understand consumers’ preferences, attitudes and claimed needs in household cleaning. That said, little information has been collected on the active role that products play or could play as participants in the everyday dynamics of US consumers. An anthropological approach to the study of U.S. kitchens, as an important center of family interaction in U.S. households, should yield important insights to the design and development of products that can more effectively and more actively participate in those dynamics. With this project I am fundamentally proposing a new approach to the identification of critical product design requirements. Figure on the right shows the key differences between the psychology-derived principles the organization is mostly using today vs. the anthropological lenses through which I will be conducting my research. Overall, I will be leveraging existing knowledge in the “individual desires” realm, connecting it to the collective situation & cultural context within which “cleaning action” emerges.

Urbanization causes various environmental issues including water pollution, air pollution, and solid waste. Urbanization of watersheds has a profound influence on the quality of stormwater runoff. The quality of stormwater runoff is highly associated with land use. This study analyzed the exceedance frequency of stormwater quality in five watersheds of Denton over eleven years and also analyzed the relationship between stormwater quality and land use/cover of each watershed. The results showed that the most of the water quality parameters that were examined in the Lower Pecan watershed exceeded their threshold most frequently. The higher frequency of exceedance in this watershed can be attributed to the wastewater treatment plant and landfill site. Total suspended solids and turbidity were frequently exceeded in Hickory and Clear Creek watersheds. Conductivity was found to have highest percentage of exceedance in Upper Pecan and Cooper watersheds. Thus, rural watersheds were related with higher exceedance of TSS and turbidity whereas urban watersheds were related with higher exceedance of conductivity.

This thesis examines formal organization in ground-bass works. While it is true that many or even most works of the ground-bass repertoire are variation sets over a ground, there also exist many ground-bass works that are not in variation form. The primary goal of this thesis is to elucidate the various ways in which such non-variation formal organizations may be achieved. The first chapter of this work discusses the general properties of ground basses and various ways that individual phrases may be placed in relation to the statements of the ground. The second chapter considers phrases groupings, phrase rhythm, and the larger formal organizations that result. The third chapter concludes this study with complete analyses of Purcell’s “When I am laid in earth” from Dido and Aeneas and Delanade’s “Jerusalem, convertere ad dominum Deum tuum” from his setting of the Leçons de ténèbres.

Optical character recognition (OCR) software has advanced greatly in recent years. Machine-printed text can be scanned and converted to searchable text with word accuracy rates around 98%. Reasonably neat hand-printed text can be recognized with about 85% word accuracy. However, cursive handwriting still remains a challenge, with state-of-the-art performance still around 75%. Algorithms based on hidden Markov models have been only moderately successful, while recurrent neural networks have delivered the best results to date. This thesis explored the feasibility of using a special type of feedforward neural network to convert freeform cursive handwriting to searchable text. The hidden nodes in this network were grouped into clusters, with each cluster being trained to recognize a unique character bigram. The network was trained on writing samples that were pre-segmented and annotated. Post-processing was facilitated in part by using the network to identify overlapping bigrams that were then linked together to form words and sentences. With dictionary assisted post-processing, the network achieved word accuracy of 66.5% on a small, proprietary corpus. The contributions in this thesis are threefold: 1) the novel clustered architecture of the feed-forward neural network, 2) the development of an expanded set of observers combining image masks, modifiers, and feature …