Comparison of Sequential Designs of Computer Experiments in High Dimensions (open access)

Comparison of Sequential Designs of Computer Experiments in High Dimensions

None
Date: July 21, 2011
Creator: Kupresanin, A M & Johannesson, G
Object Type: Report
System: The UNT Digital Library
Atmospheric Stability Affects Wind Turbine Power Collection (open access)

Atmospheric Stability Affects Wind Turbine Power Collection

None
Date: April 21, 2011
Creator: Wharton, S & Lundquist, J K
Object Type: Article
System: The UNT Digital Library
Preliminary report for analysis of genome wide mutations from four ciprofloxacin resistant B. anthracis Sterne isolates generated by Illumina, 454 sequencing and microarrays for DHS (open access)

Preliminary report for analysis of genome wide mutations from four ciprofloxacin resistant B. anthracis Sterne isolates generated by Illumina, 454 sequencing and microarrays for DHS

None
Date: June 21, 2011
Creator: Jaing, C.; Vergez, L.; Hinckley, A.; Thissen, J.; Gardner, S.; McLoughlin, K. et al.
Object Type: Report
System: The UNT Digital Library
Nonequilibrium candidate Monte Carlo: A new tool for equilibrium simulation (open access)

Nonequilibrium candidate Monte Carlo: A new tool for equilibrium simulation

None
Date: June 21, 2011
Creator: Nilmeier, J P; Crooks, G E; Minh, D L & Chodera, J D
Object Type: Article
System: The UNT Digital Library
Role of Singular Layers in the Plasma Response to Resonant Magnetic Perturbations (open access)

Role of Singular Layers in the Plasma Response to Resonant Magnetic Perturbations

None
Date: October 21, 2011
Creator: Waelbroeck, F L; Joseph, I; Nardon, E; Becoulet, M & Fitzpatrick, R
Object Type: Article
System: The UNT Digital Library
Long-Term Hydrologic Monitoring Program Sampling and Analysis Results for 2011 (open access)

Long-Term Hydrologic Monitoring Program Sampling and Analysis Results for 2011

The U.S. Department of Energy (DOE) Office of Legacy Management conducted annual sampling at the Rio Blanco site for the LTHMP on May 16 and 17, 2011. The samples were shipped to the U.S. Environmental Protection Agency (EPA) Radiation&Indoor Environments National Laboratory in Las Vegas, Nevada, for analysis. All requested analyses were successfully completed, with the exception of the determination of tritium concentration by the enrichment method, because the laboratory no longer provides that service. Samples were analyzed for gamma-emitting radionuclides by high-resolution gamma spectrometry and tritium using the conventional method. Starting in 2012, DOE will retain a different laboratory that provides the enriched tritium analysis service.
Date: December 21, 2011
Creator: unknown
Object Type: Report
System: The UNT Digital Library
The r-process in Metal Poor Stars, and Black Hole Formation (open access)

The r-process in Metal Poor Stars, and Black Hole Formation

None
Date: July 21, 2011
Creator: Boyd, R. N.; Famiano, M. A.; Meyer, B. S.; Motizuki, Y.; Kajino, T. & Roederer, I. U.
Object Type: Article
System: The UNT Digital Library
Survey of Novel Programming Models for Parallelizing Applications at Exascale (open access)

Survey of Novel Programming Models for Parallelizing Applications at Exascale

None
Date: November 21, 2011
Creator: Cook, R.; Dube, E.; Lee, I.; Shereda, C.; Wang, F. & Nau, L.
Object Type: Report
System: The UNT Digital Library
Target Visualization at the National Ignition Facility (open access)

Target Visualization at the National Ignition Facility

As the National Ignition Facility continues its campaign to achieve ignition, new methods and tools will be required to measure the quality of the targets used to achieve this goal. Techniques have been developed to measure target surface features using a phase-shifting diffraction interferometer and Leica Microsystems confocal microscope. Using these techniques we are able to produce a detailed view of the shell surface, which in turn allows us to refine target manufacturing and cleaning processes. However, the volume of data produced limits the methods by which this data can be effectively viewed by a user. This paper introduces an image-based visualization system for data exploration of target shells at the National Ignition Facility (NIF) at Lawrence Livermore National Laboratory. It aims to combine multiple image sets into a single visualization to provide a method of navigating the data in ways that are not possible with existing tools.
Date: November 21, 2011
Creator: Potter, D
Object Type: Thesis or Dissertation
System: The UNT Digital Library
NA-42 TI Shared Software Component Library FY2011 Final Report (open access)

NA-42 TI Shared Software Component Library FY2011 Final Report

The NA-42 TI program initiated an effort in FY2010 to standardize its software development efforts with the long term goal of migrating toward a software management approach that will allow for the sharing and reuse of code developed within the TI program, improve integration, ensure a level of software documentation, and reduce development costs. The Pacific Northwest National Laboratory (PNNL) has been tasked with two activities that support this mission. PNNL has been tasked with the identification, selection, and implementation of a Shared Software Component Library. The intent of the library is to provide a common repository that is accessible by all authorized NA-42 software development teams. The repository facilitates software reuse through a searchable and easy to use web based interface. As software is submitted to the repository, the component registration process captures meta-data and provides version control for compiled libraries, documentation, and source code. This meta-data is then available for retrieval and review as part of library search results. In FY2010, PNNL and staff from the Remote Sensing Laboratory (RSL) teamed up to develop a software application with the goal of replacing the aging Aerial Measuring System (AMS). The application under development includes an Advanced Visualization and Integration …
Date: July 21, 2011
Creator: Knudson, Christa K.; Rutz, Frederick C. & Dorow, Kevin E.
Object Type: Report
System: The UNT Digital Library
Quantum Dot Light Enhancement Substrate for OLED Solid-State Lighting (open access)

Quantum Dot Light Enhancement Substrate for OLED Solid-State Lighting

With DOE Award No. DE-EE00000628, QD Vision developed and demonstrated a cost-competitive solution for increasing the light extraction efficiency of OLEDs with efficient and stable color rendering index (CRI) for solid state lighting (SSL). Solution processable quantum dot (QD) films were integrated into OLED ITO-glass substrates to generate tunable white emission from blue emitting OLED) devices as well as outcouple light from the ITO film. This QD light-enhancement substrate (QD-LED) technology demonstrated a 60% increase in OLED forward light out-coupling, a value which increases to 76% when considering total increase in multi-directional light output. The objective for the first year was an 80% increase in light output. This project seeks to develop and demonstrate a cost-competitive solution for realizing increased extraction efficiency organic light emitting devices (OLEDs) with efficient and stable color rendering index (CRI) for SSL. Solution processible quantum dot (QD) films will be utilized to generate tunable white emission from blue emitting phosphorescent OLED (Ph-OLED) devices.
Date: January 21, 2011
Creator: Perkins, James; Stevenson, Matthew; Mahan, Gagan; Coe-Sullivan, Seth & Kazlas, Peter
Object Type: Report
System: The UNT Digital Library
Illumina Unamplified Indexed Library Construction: An Automated Approach (open access)

Illumina Unamplified Indexed Library Construction: An Automated Approach

Manual library construction is a limiting factor in Illumina sequencing. Constructing libraries by hand is costly, time-consuming, low-throughput, and ergonomically hazardous, and constructing multiple libraries introduces risk of library failure due to pipetting errors. The ability to construct multiple libraries simultaneously in automated fashion represents significant cost and time savings. Here we present a strategy to construct up to 96 unamplified indexed libraries using Illumina TruSeq reagents and a Biomek FX robotic platform. We also present data to indicate that this library construction method has little or no risk of cross-contamination between samples.
Date: March 21, 2011
Creator: Hack, Christopher A.; Sczyrba, Alexander & Cheng, Jan-Fang
Object Type: Article
System: The UNT Digital Library
Influence of Wetting and Mass Transfer Properties of Organic Chemical Mixtures in Vadose Zone Materials on Groundwater Contamination by Nonaqueous Phase Liquids (open access)

Influence of Wetting and Mass Transfer Properties of Organic Chemical Mixtures in Vadose Zone Materials on Groundwater Contamination by Nonaqueous Phase Liquids

Previous studies have found that organic acids, organic bases, and detergent-like chemicals change surface wettability. The wastewater and NAPL mixtures discharged at the Hanford site contain such chemicals, and their proportions likely change over time due to reaction-facilitated aging. The specific objectives of this work were to (1) determine the effect of organic chemical mixtures on surface wettability, (2) determine the effect of organic chemical mixtures on CCl4 volatilization rates from NAPL, and (3) accurately determine the migration, entrapment, and volatilization of organic chemical mixtures. Five tasks were proposed to achieve the project objectives. These are to (1) prepare representative batches of fresh and aged NAPL-wastewater mixtures, (2) to measure interfacial tension, contact angle, and capillary pressure-saturation profiles for the same mixtures, (3) to measure interphase mass transfer rates for the same mixtures using micromodels, (4) to measure multiphase flow and interphase mass transfer in large flow cell experiments, all using the same mixtures, and (5) to modify the multiphase flow simulator STOMP in order to account for updated P-S and interphase mass transfer relationships, and to simulate the impact of CCl4 in the vadose zone on groundwater contamination. Results and findings from these tasks and summarized in the attached …
Date: May 21, 2011
Creator: Werth, Charles J & Albert J Valocchi, Hongkyu Yoon
Object Type: Report
System: The UNT Digital Library
Solid Collection Efforts: Ta Collimator Evaluation (open access)

Solid Collection Efforts: Ta Collimator Evaluation

Ta collimator sets that were part of the gated x-ray detector diagnostic (GXD) at NIF were analyzed for debris distribution and damage in 2011. These disks (ranging in thickness from 250 to 750 {mu}m) were fielded approximately 10 cm from target chamber center (TCC) on various symcap, THD and re-emit shots. The nose cone holder and forward Ta collimator (facing target chamber center, TCC) from all shots show evidence of surface melt. Non-destructive analysis techniques such as optical microscopy, surface profilometry, scanning electron microscopy (SEM), energy dispersive spectroscopy (EDS), and x-ray fluorescence (XRF) were used to determine debris composition and degree of deformation associated with each Ta disk. Molten debris from the stainless steel nose cone contaminated the surface of the collimators along with other debris associated with the target assembly (Al, Si, Cu, Au and In). Surface elemental analysis of the forward collimator Ta disks indicates that Au hohlraum debris is less concentrated on these samples versus those fielded 50 cm from TCC in the wedge range filter (WRF) assembly. It is possible that the Au is distributed below or within the stainless steel melt layer covering the disk, as most of the foreign debris is captured in the …
Date: November 21, 2011
Creator: Gostic, J M
Object Type: Report
System: The UNT Digital Library
Small-Column Cesium Ion Exchange Elution Testing of Spherical Resorcinol-Formaldehyde (open access)

Small-Column Cesium Ion Exchange Elution Testing of Spherical Resorcinol-Formaldehyde

This report summarizes the work performed to evaluate multiple, cesium loading, and elution cycles for small columns containing SRF resin using a simple, high-level waste (HLW) simulant. Cesium ion exchange loading and elution curves were generated for a nominal 5 M Na, 2.4E-05 M Cs, 0.115 M Al loading solution traced with 134Cs followed by elution with variable HNO3 (0.02, 0.07, 0.15, 0.23, and 0.28 M) containing variable CsNO3 (5.0E-09, 5.0E-08, and 5.0E-07 M) and traced with 137Cs. The ion exchange system consisted of a pump, tubing, process solutions, and a single, small ({approx}15.7 mL) bed of SRF resin with a water-jacketed column for temperature-control. The columns were loaded with approximately 250 bed volumes (BVs) of feed solution at 45 C and at 1.5 to 12 BV per hour (0.15 to 1.2 cm/min). The columns were then eluted with 29+ BVs of HNO3 processed at 25 C and at 1.4 BV/h. The two independent tracers allowed analysis of the on-column cesium interaction between the loading and elution solutions. The objective of these tests was to improve the correlation between the spent resin cesium content and cesium leached out of the resin in subsequent loading cycles (cesium leakage) to help establish …
Date: October 21, 2011
Creator: Brown, Garrett N.; Russell, Renee L. & Peterson, Reid A.
Object Type: Report
System: The UNT Digital Library
Godiva and Juliet Diagnostics CED-1 (IER-176) (open access)

Godiva and Juliet Diagnostics CED-1 (IER-176)

A suite of diagnostics are being proposed for use in the Juliet experiment (IER-128). In order to calibrate and test the diagnostics prior to use, the LLNL calibration facility and Godiva pulsed reactor will be used to provide intense sources of neutrons and gammas. Due to the similarities of the Godiva and Juliet radiation fields, the diagnostics being developed and tested for Juliet can also play an on-going role in diagnostics for Godiva as well as, perhaps, other critical assembly experiments. Similar work is also being conducted for IER-147 for the purpose of characterizing the Godiva radiation field in support of an upcoming international nuclear accident dosimetry exercise. Diagnostics developed and fielded under IER-147 can provide valuable data with respect to the neutron and gamma energy spectrums in the vicinity of Godiva which is relevant to the calibration of Juliet diagnostics.
Date: December 21, 2011
Creator: Scorby, J C
Object Type: Report
System: The UNT Digital Library
FINAL SCIENTIFIC/TECHNICAL REPORT (open access)

FINAL SCIENTIFIC/TECHNICAL REPORT

Dynalene Inc has developed and patented a fuel cell coolant with the help of DOE SBIR Phase I and Phase II funding (Project DE-FG02-04ER83884). However, this coolant could only be produced in lab scale (500 ml to 2 L) due to problems in the optimization and scale-up of a nanoparticle ingredient. This project optimized the nanoparticle production process in 10 L and 100 L reactors (which translates to about 5000 gallons of coolant), optimized the filtration process for the nanoparticles, and develop a high throughput production as well as quality control method for the final coolant formulation. Scale-up of nanoparticle synthesis (using emulsion polymerization) is an extremely challenging task. Dynalene researchers, in collaboration with a university partner, identified all the parameters affecting the size, charge density and coagulation characteristics of the nanoparticles and then optimized these parameters to achieve the goals and the objectives of this project. Nanoparticle synthesis was demonstrated to be reproducible in the 10 L and 100 L scales.
Date: December 21, 2011
Creator: Mohapatra, Satish
Object Type: Report
System: The UNT Digital Library
GROUNDWATER MONITORING REPORT GENERATION TOOLS - 12005 (open access)

GROUNDWATER MONITORING REPORT GENERATION TOOLS - 12005

Compliance with National and State environmental regulations (e.g. Resource Conservation and Recovery Act (RCRA) and Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA) aka SuperFund) requires Savannah River Site (SRS) to extensively collect and report groundwater monitoring data, with potential fines for missed reporting deadlines. Several utilities have been developed at SRS to facilitate production of the regulatory reports which include maps, data tables, charts and statistics. Components of each report are generated in accordance with complex sets of regulatory requirements specific to each site monitored. SRS developed a relational database to incorporate the detailed reporting rules with the groundwater data, and created a set of automation tools to interface with the information and generate the report components. These process improvements enhanced quality and consistency by centralizing the information, and have reduced manpower and production time through automated efficiencies.
Date: November 21, 2011
Creator: Lopez, N.
Object Type: Article
System: The UNT Digital Library
Ancient nature of alternative splicing and functions of introns (open access)

Ancient nature of alternative splicing and functions of introns

Using four genomes: Chamydomonas reinhardtii, Agaricus bisporus, Aspergillus carbonarius, and Sporotricum thermophile with EST coverage of 2.9x, 8.9x, 29.5x, and 46.3x respectively, we identified 11 alternative splicing (AS) types that were dominated by intron retention (RI; biased toward short introns) and found 15, 35, 52, and 63percent AS of multiexon genes respectively. Genes with AS were more ancient, and number of AS correlated with number of exons, expression level, and maximum intron length of the gene. Introns with tendency to be retained had either stop codons or length of 3n+1 or 3n+2 presumably triggering nonsense-mediated mRNA decay (NMD), but introns retained in major isoforms (0.2-6percent of all introns) were biased toward 3n length and stop codon free. Stopless introns were biased toward phase 0, but 3n introns favored phase 1 that introduced more flexible and hydrophilic amino acids on both ends of introns which would be less disruptive to protein structure. We proposed a model in which minor RI intron could evolve into major RI that could facilitate intron loss through exonization.
Date: March 21, 2011
Creator: Zhou, Kemin; Salamov, Asaf; Kuo, Alan; Aerts, Andrea & Grigoriev, Igor
Object Type: Article
System: The UNT Digital Library
DAFNE Setup And Operation With the Crab-Waist Collision Scheme (open access)

DAFNE Setup And Operation With the Crab-Waist Collision Scheme

In the second half of 2007 a major upgrade has been implemented on the Frascati DA{Phi}NE collider in order to test the novel idea of Crab-Waist collisions. New vacuum chambers and permanent quadrupole magnets have been designed, built and installed to realize the new configuration. At the same time the performances of relevant hardware components, such as fast injection kickers and shielded bellows have been improved relying on new design concepts. The collider has been successfully commissioned in this new configuration. The paper describes several experimental results about linear and non-linear optics setup and optimization, damping of beam-beam instabilities and discusses the obtained luminosity performances. DA{Phi}NE [1] is the Frascati lepton collider working at the c m. energy of the {Phi} meson resonance (1020). It came in operation in 2001 and till summer 2007 provided luminosity, in sequence, to three different experiments which logged a total integrated luminosity of {approx} 4.4 fb{sup -1}. During these years the collider reached its best performances in terms of luminosity and background (L{sub peak} = 1.6 x 10{sup 32} cm{sup -2}s{sup -1} L{sub day} {approx} 10 pb{sup -1}) by means of several successive upgrades, relying on the experience gathered during the collider operations and …
Date: October 21, 2011
Creator: Milardi, C.; Alesini, D.; Biagini, M. E.; Biscari, C.; Boni, R.; Boscolo, M. et al.
Object Type: Article
System: The UNT Digital Library
2011 RENEWABLE ENERGY: SOLAR FUELS GORDON RESEARCH CONFERENCE (open access)

2011 RENEWABLE ENERGY: SOLAR FUELS GORDON RESEARCH CONFERENCE

The conference will present and discuss current science that underlies solar fuels production, and will focus on direct production pathways for production. Thus, recent advances in design and understanding of molecular systems and materials for light capture and conversion of relevance for solar fuels will be discussed. An important set of topics will be homogeneous, heterogeneous and biological catalysts for the multi-electron processes of water oxidation, hydrogen production and carbon dioxide reduction to useful fuels. Also, progress towards integrated and scalable systems will be presented. Attached is a copy of the formal schedule and speaker program and the poster program.
Date: January 21, 2011
Creator: Hupp, Joseph
Object Type: Article
System: The UNT Digital Library
Simplified models for mask roughness induced LER (open access)

Simplified models for mask roughness induced LER

The ITRS requires < 1.2nm line-edge roughness (LER) for the 22nm half-pitch node. Currently, we can consistently achieve only about 3nm LER. Further progress requires understanding the principle causes of LER. Much work has already been done on how both the resist and LER on the mask effect the final printed LER. What is poorly understood, however, is the extent to which system-level effects such as mask surface roughness, illumination conditions, and defocus couple to speckle at the image plane, and factor into LER limits. Presently, mask-roughness induced LER is studied via full 2D aerial image modeling and subsequent analysis of the resulting image. This method is time consuming and cumbersome. It is, therefore, the goal of this research to develop a useful 'rule-of-thumb' analytic model for mask roughness induced LER to expedite learning and understanding.
Date: February 21, 2011
Creator: McClinton, Brittany & Naulleau, Patrick
Object Type: Article
System: The UNT Digital Library
Mapping Diffuse Seismicity Using Empirical Matched Field Processing Techniques (open access)

Mapping Diffuse Seismicity Using Empirical Matched Field Processing Techniques

The objective of this project is to detect and locate more microearthquakes using the empirical matched field processing (MFP) method than can be detected using only conventional earthquake detection techniques. We propose that empirical MFP can complement existing catalogs and techniques. We test our method on continuous seismic data collected at the Salton Sea Geothermal Field during November 2009 and January 2010. In the Southern California Earthquake Data Center (SCEDC) earthquake catalog, 619 events were identified in our study area during this time frame and our MFP technique identified 1094 events. Therefore, we believe that the empirical MFP method combined with conventional methods significantly improves the network detection ability in an efficient matter.
Date: January 21, 2011
Creator: Wang, J; Templeton, D C & Harris, D B
Object Type: Article
System: The UNT Digital Library
Quantitative evaluation of mask phase defects from through-focus EUV aerial images (open access)

Quantitative evaluation of mask phase defects from through-focus EUV aerial images

Mask defects inspection and imaging is one of the most important issues for any pattern transfer lithography technology. This is especially true for EUV lithography where the wavelength-specific properties of masks and defects necessitate actinic inspection for a faithful prediction of defect printability and repair performance. In this paper we will present a technique to obtain a quantitative characterization of mask phase defects from EUV aerial images. We apply this technique to measure the aerial image phase of native defects on a blank mask, measured with the SEMATECH Berkeley Actinic Inspection Tool (AIT) an EUV zoneplate microscope that operates at Lawrence Berkeley National Laboratory. The measured phase is compared with predictions made from AFM top-surface measurements of those defects. While amplitude defects are usually easy to recognize and quantify with standard inspection techniques like scanning electron microscopy (SEM), defects or structures that have a phase component can be much more challenging to inspect. A phase defect can originate from the substrate or from any level of the multilayer. In both cases its effect on the reflected field is not directly related to the local topography of the mask surface, but depends on the deformation of the multilayer structure. Using the …
Date: February 21, 2011
Creator: Mochi, Iacopo; Yamazoe, Kenji; Neureuther, Andrew & Goldberg, Kenneth A.
Object Type: Article
System: The UNT Digital Library