States

Analysis and Mitigation of X-Ray Hazard Generated From High Intensity Laser-Target Interactions (open access)

Analysis and Mitigation of X-Ray Hazard Generated From High Intensity Laser-Target Interactions

Interaction of a high intensity laser with matter may generate an ionizing radiation hazard. Very limited studies have been made, however, on the laser-induced radiation protection issue. This work reviews available literature on the physics and characteristics of laser-induced X-ray hazards. Important aspects include the laser-to-electron energy conversion efficiency, electron angular distribution, electron energy spectrum and effective temperature, and bremsstrahlung production of X-rays in the target. The possible X-ray dose rates for several femtosecond Ti:sapphire laser systems used at SLAC, including the short pulse laser system for the Matter in Extreme Conditions Instrument (peak power 4 TW and peak intensity 2.4 x 10{sup 18} W/cm{sup 2}) were analysed. A graded approach to mitigate the laser-induced X-ray hazard with a combination of engineered and administrative controls is also proposed.
Date: March 21, 2011
Creator: Qiu, R.; Liu, J. C.; Prinz, A. A.; Rokni, S. H.; Woods, M. & Xia, Z.
Object Type: Article
System: The UNT Digital Library
Ancient nature of alternative splicing and functions of introns (open access)

Ancient nature of alternative splicing and functions of introns

Using four genomes: Chamydomonas reinhardtii, Agaricus bisporus, Aspergillus carbonarius, and Sporotricum thermophile with EST coverage of 2.9x, 8.9x, 29.5x, and 46.3x respectively, we identified 11 alternative splicing (AS) types that were dominated by intron retention (RI; biased toward short introns) and found 15, 35, 52, and 63percent AS of multiexon genes respectively. Genes with AS were more ancient, and number of AS correlated with number of exons, expression level, and maximum intron length of the gene. Introns with tendency to be retained had either stop codons or length of 3n+1 or 3n+2 presumably triggering nonsense-mediated mRNA decay (NMD), but introns retained in major isoforms (0.2-6percent of all introns) were biased toward 3n length and stop codon free. Stopless introns were biased toward phase 0, but 3n introns favored phase 1 that introduced more flexible and hydrophilic amino acids on both ends of introns which would be less disruptive to protein structure. We proposed a model in which minor RI intron could evolve into major RI that could facilitate intron loss through exonization.
Date: March 21, 2011
Creator: Zhou, Kemin; Salamov, Asaf; Kuo, Alan; Aerts, Andrea & Grigoriev, Igor
Object Type: Article
System: The UNT Digital Library
Annual Report of Groundwater Monitoring at Everest, Kansas, in 2010. (open access)

Annual Report of Groundwater Monitoring at Everest, Kansas, in 2010.

The Commodity Credit Corporation of the U.S. Department of Agriculture (CCC/USDA) began its environmental investigations at Everest, Kansas, in 2000. The work at Everest is implemented on behalf of the CCC/USDA by Argonne National Laboratory, under the oversight of the Kansas Department of Health and Environment (KDHE). The results of the environmental investigations have been reported in detail (Argonne 2001, 2003, 2006a,b). The lateral extent of the carbon tetrachloride in groundwater over the years of investigation has been interpreted as shown in Figure 1.1 (2001-2002 data), Figure 1.2 (2006 data), Figure 1.3 (2008 data), and Figure 1.4 (2009 data). The pattern of groundwater flow and inferred contaminant migration has consistently been to the north-northwest from the former CCC/USDA facility toward the Nigh property, and then west-southwest from the Nigh property (e.g., Figure 1.5 [2008 data] and Figure 1.6 [2009 data]). Both the monitoring data for carbon tetrachloride and the low groundwater flow rates estimated for the Everest aquifer unit (Argonne 2003, 2006a,b, 2008) indicate slow contaminant migration. On the basis of the accumulated findings, in March 2009 the CCC/USDA developed a plan for annual monitoring of the groundwater and surface water. This current monitoring plan (Appendix A in the report …
Date: March 21, 2011
Creator: Lafreniere, L. M.
Object Type: Report
System: The UNT Digital Library
Clouds and Chemistry in the Atmosphere of Extrasolar Planet HR8799b (open access)

Clouds and Chemistry in the Atmosphere of Extrasolar Planet HR8799b

Using the integral field spectrograph OSIRIS, on the Keck II telescope, broad near-infrared H and K-band spectra of the young exoplanet HR8799b have been obtained. In addition, six new narrow-band photometric measurements have been taken across the H and K bands. These data are combined with previously published photometry for an analysis of the planet's atmospheric properties. Thick photospheric dust cloud opacity is invoked to explain the planet's red near-IR colors and relatively smooth near-IR spectrum. Strong water absorption is detected, indicating a Hydrogen-rich atmosphere. Only weak CH{sub 4} absorption is detected at K band, indicating efficient vertical mixing and a disequilibrium CO/CH{sub 4} ratio at photospheric depths. The H-band spectrum has a distinct triangular shape consistent with low surface gravity. New giant planet atmosphere models are compared to these data with best fitting bulk parameters, T{sub eff} = 1100K {+-} 100 and log(g) = 3.5 {+-} 0.5 (for solar composition). Given the observed luminosity (log L{sub obs}/L{sub {circle_dot}} {approx} -5.1), these values correspond to a radius of 0.75 R{sub Jup{sub 0.12}{sup +0.17}} and mass {approx} 0.72 M{sub Jup{sub -0.6}{sup +2.6}} - strikingly inconsistent with interior/evolution models. Enhanced metallicity (up to {approx} 10 x that of the Sun) along with …
Date: March 21, 2011
Creator: Barman, T. S.; Macintosh, B. A.; Konopacky, Q. M. & Marois, C.
Object Type: Article
System: The UNT Digital Library
Density Gradient Stabilization of Electron Temperature Gradient Driven Turbulence in a Spherical Tokamak (open access)

Density Gradient Stabilization of Electron Temperature Gradient Driven Turbulence in a Spherical Tokamak

In this letter we report the first clear experimental observation of density gradient stabilization of electron temperature gradient driven turbulence in a fusion plasma. It is observed that longer wavelength modes, k⊥ρs ≤10, are most stabilized by density gradient, and the stabilization is accompanied by about a factor of two decrease in the plasma effective thermal diffusivity.
Date: March 21, 2011
Creator: Ren, Y.; Mazzucato, E.; Guttenfelder, W.; Bell, R. E.; Domier, C. W.; LeBlanc, B. P. et al.
Object Type: Report
System: The UNT Digital Library
DUK - A Fast and Efficient Kmer Based Sequence Matching Tool (open access)

DUK - A Fast and Efficient Kmer Based Sequence Matching Tool

A new tool, DUK, is developed to perform matching task. Matching is to find whether a query sequence partially or totally matches given reference sequences or not. Matching is similar to alignment. Indeed many traditional analysis tasks like contaminant removal use alignment tools. But for matching, there is no need to know which bases of a query sequence matches which position of a reference sequence, it only need know whether there exists a match or not. This subtle difference can make matching task much faster than alignment. DUK is accurate, versatile, fast, and has efficient memory usage. It uses Kmer hashing method to index reference sequences and Poisson model to calculate p-value. DUK is carefully implemented in C++ in object oriented design. The resulted classes can also be used to develop other tools quickly. DUK have been widely used in JGI for a wide range of applications such as contaminant removal, organelle genome separation, and assembly refinement. Many real applications and simulated dataset demonstrate its power.
Date: March 21, 2011
Creator: Li, Mingkun; Copeland, Alex & Han, James
Object Type: Article
System: The UNT Digital Library
Final Progress Report (open access)

Final Progress Report

The objective of this project was to complete the specifications and drawings for a variable speed kitchen exhaust system and the boiler heating system which when implemented will improve the heating efficiency of the building. The design work was focused in two key areas: kitchen ventilation and heating for the Ernie Turner Center building (ETC). RSA completed design work and issued a set of 100% drawings. RSA also worked with a cost estimator to put together a detailed cost estimate for the project. The design components are summarized.
Date: March 21, 2011
Creator: Fredeen, Amy
Object Type: Text
System: The UNT Digital Library
Illumina Unamplified Indexed Library Construction: An Automated Approach (open access)

Illumina Unamplified Indexed Library Construction: An Automated Approach

Manual library construction is a limiting factor in Illumina sequencing. Constructing libraries by hand is costly, time-consuming, low-throughput, and ergonomically hazardous, and constructing multiple libraries introduces risk of library failure due to pipetting errors. The ability to construct multiple libraries simultaneously in automated fashion represents significant cost and time savings. Here we present a strategy to construct up to 96 unamplified indexed libraries using Illumina TruSeq reagents and a Biomek FX robotic platform. We also present data to indicate that this library construction method has little or no risk of cross-contamination between samples.
Date: March 21, 2011
Creator: Hack, Christopher A.; Sczyrba, Alexander & Cheng, Jan-Fang
Object Type: Article
System: The UNT Digital Library
The LIFE Laser Design in Context: A Comparison to the State-of-the-Art (open access)

The LIFE Laser Design in Context: A Comparison to the State-of-the-Art

The current point design for the LIFE laser leverages decades of solid-state laser development in order to achieve the performance and attributes required for inertial fusion energy. This document provides a brief comparison of the LIFE laser point design to other state-of-the-art solid-state lasers. Table I compares the attributes of the current LIFE laser point design to other systems. the state-of-the-art for single-shot performance at fusion-relevant beamline energies is exemplified by performance observed on the National Ignition Facility. The state-of-the-art for high average power is exemplified by the Northrup Grumman JHPSSL laser. Several items in Table I deal with the laser efficiency; a more detailed discussion of efficiency can be found in reference 5. The electrical-to-optical efficiency of the LIFE design exceeds that of reference 4 due to the availability of higher efficiency laser diode pumps (70% vs. {approx}50% used in reference 4). LIFE diode pumps are discussed in greater detail in reference 6. The 'beam steering' state of the art is represented by the deflection device that will be used in the LIFE laser, not a laser system. Inspection of Table I shows that most LIFE laser attributes have already been experimentally demonstrated. The two cases where the LIFE …
Date: March 21, 2011
Creator: Deri, R. J.; Bayramian, A. J. & Erlandson, A. C.
Object Type: Report
System: The UNT Digital Library
Portal 6.0 Released!! (open access)

Portal 6.0 Released!!

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Date: March 21, 2011
Creator: Cantor, Michael & Smirnova, Tatyana
Object Type: Article
System: The UNT Digital Library
Target Allocation Methodology for China's Provinces: Energy Intensity in the 12th FIve-Year Plan (open access)

Target Allocation Methodology for China's Provinces: Energy Intensity in the 12th FIve-Year Plan

Experience with China's 20% energy intensity improvement target during the 11th Five-Year Plan (FYP) (2006-2010) has shown the challenges of rapidly setting targets and implementing measures to meet them. For the 12th FYP (2011-2015), there is an urgent need for a more scientific methodology to allocate targets among the provinces and to track physical and economic indicators of energy and carbon saving progress. This report provides a sectoral methodology for allocating a national energy intensity target - expressed as percent change in energy per unit gross domestic product (GDP) - among China's provinces in the 12th FYP. Drawing on international experience - especially the European Union (EU) Triptych approach for allocating Kyoto carbon targets among EU member states - the methodology here makes important modifications to the EU approach to address an energy intensity rather than a CO{sub 2} emissions target, and for the wider variation in provincial energy and economic structure in China. The methodology combines top-down national target projections and bottom-up provincial and sectoral projections of energy and GDP to determine target allocation of energy intensity targets. Total primary energy consumption is separated into three end-use sectors - industrial, residential, and other energy. Sectoral indicators are used to …
Date: March 21, 2011
Creator: Ohshita, Stephanie & Price, Lynn
Object Type: Report
System: The UNT Digital Library