saSNP Approach for Scalable SNP Analyses of Multiple Bacterial or Viral Genomes (open access)

saSNP Approach for Scalable SNP Analyses of Multiple Bacterial or Viral Genomes

None
Date: July 27, 2010
Creator: Gardner, S & Slezak, T
Object Type: Report
System: The UNT Digital Library
Science and Technology Review July/August 2010 (open access)

Science and Technology Review July/August 2010

This issue has the following articles: (1) Deterrence with a Minimum Nuclear Stockpile - Commentary by Bruce T. Goodwin; (2) Enhancing Confidence in the Nation's Nuclear Stockpile - Livermore experts are participating in a national effort aimed at predicting how nuclear weapon materials and systems will likely change over time; (3) Narrowing Uncertainties - For climate modeling and many other fields, understanding uncertainty, or margin of error, is critical; (4) Insight into a Deadly Disease - Laboratory experiments reveal the pathogenesis of tularemia in host cells, bringing scientists closer to developing a vaccine for this debilitating disease. (5) Return to Rongelap - On the Rongelap Atoll, Livermore scientists are working to minimize radiological exposure for natives now living on or wishing to return to the islands.
Date: May 27, 2010
Creator: Blobaum, K M
Object Type: Report
System: The UNT Digital Library
SECOND STATUS REPORT: TESTING OF AGED SOFTWOOD FIBERBOARD MATERIAL FOR THE 9975 SHIPPING PACKAGE (open access)

SECOND STATUS REPORT: TESTING OF AGED SOFTWOOD FIBERBOARD MATERIAL FOR THE 9975 SHIPPING PACKAGE

Samples have been prepared from a softwood fiberboard lower subassembly. Physical, mechanical and thermal properties have been measured following varying periods of conditioning in each of several environments. These tests have been conducted in the same manner as previous testing on cane fiberboard samples. Overall, similar aging trends are observed for softwood and cane fiberboard samples, with a few differences. On the positive side, the softwood fiberboard data to date shows less sample-to-sample variation in physical properties than cane fiberboard, and the thermal conductivity decreases at a slower rate at 250F for softwood fiberboard than for cane fiberboard. On the other hand, the softwood fiberboard physical property samples generally show degradation rates greater than cane fiberboard samples in the 185F 30%RH environment. Testing following additional conditioning will continue and the addition of samples in other elevated humidity environment(s) will be pursued to identify the extent of these trends. Post-conditioning data have been measured on samples from a single softwood fiberboard assembly, and baseline data are also available from a limited number of vendor-provided samples. This provides minimal information on the possible sample-to-sample variation exhibited by softwood fiberboard. Data to date are generally consistent with the range seen in cane fiberboard, …
Date: December 27, 2010
Creator: Daugherty, W.
Object Type: Report
System: The UNT Digital Library
Semi-annual monitoring report for Barnes, Kansas, for July-December 2009. (open access)

Semi-annual monitoring report for Barnes, Kansas, for July-December 2009.

The Commodity Credit Corporation of the U.S. Department of Agriculture (CCC/USDA) operated a grain storage facility at Barnes, Kansas, during most of the interval 1949-1974. Carbon tetrachloride contamination was initially detected in 1986 in the town's public water supply wells. In 2006-2007, the CCC/USDA conducted a comprehensive targeted investigation at and near its former property in Barnes to characterize this contamination. Those results were reported previously (Argonne 2008a). In November 2007, the CCC/USDA began quarterly groundwater monitoring at Barnes. The monitoring is being conducted on behalf of the CCC/USDA by Argonne National Laboratory, in accord with the recommendations made in the report for the 2006-2007 targeted investigation (Argonne 2008a). The objective is to monitor the carbon tetrachloride contamination identified in the groundwater at Barnes. The sampling is presently conducted in a network of 28 individual monitoring wells (at 19 distinct locations), 2 public water supply wells, and 1 private well (Figure 1.1). The results of the 2006-2007 targeted investigation and the subsequent monitoring events (Argonne 2008a-d, 2009a,b) demonstrated the presence of carbon tetrachloride contamination in groundwater at levels exceeding the Kansas Department of Health and Environment (KDHE) Tier 2 risk-based screening level (RBSL) of 5.0 {micro}g/L for this compound. The …
Date: April 27, 2010
Creator: LaFreniere, L. M. & Division, Environmental Science
Object Type: Report
System: The UNT Digital Library
Sim Track User's Manual (v 1.0) (open access)

Sim Track User's Manual (v 1.0)

SimTrack is a simple c++ library designed for the numeric particle tracking in the high energy accelerators. It adopts the 4th order symplectic integrator for the optical transport in the magnetic elements. The 4-D and 6-D weak-strong beam-beam treatments are integrated in it for the beam-beam studies. SimTrack is written with c++ class and standard template library. It provides versatile functions to manage elements and lines. It supports a large range of types of elements. New type of element can be easily created in the library. SimTrack calculates Twiss, coupling and fits tunes, chromaticities and corrects closed orbits. AC dipole and AC multipole are available in this library. SimTrack allows change of element parameters during tracking.
Date: January 27, 2010
Creator: Luo, Y.
Object Type: Report
System: The UNT Digital Library
Soil Water Balance and Recharge Monitoring at the Hanford Site – FY 2010 Status Report (open access)

Soil Water Balance and Recharge Monitoring at the Hanford Site – FY 2010 Status Report

This report summarizes the recharge data collected in FY 2010 at five locations on the Hanford Site in southeastern Washington State. Average monthly precipitation and temperature conditions in FY 2010 were near normal and did not present an opportunity for increased recharge. The recharge monitoring data confirmed those conditions, showing normal behavior in water content, matric head, and recharge rates. Also provided in this report is a strategy for recharge estimation for the next 5 years.
Date: October 27, 2010
Creator: Fayer, Michael J.; Saunders, Danielle L.; Herrington, Ricky S. & Felmy, Diana
Object Type: Report
System: The UNT Digital Library
Star Forming Dense Cloud Cores in the TeV -ray SNR RX J1713.7-3946 (open access)

Star Forming Dense Cloud Cores in the TeV -ray SNR RX J1713.7-3946

RX J1713.7-3946 is one of the TeV {gamma}-ray supernova remnants (SNRs) emitting synchrotron X rays. The SNR is associated with molecular gas located at {approx}1 kpc. We made new molecular observations toward the dense cloud cores, peaks A, C and D, in the SNR in the {sup 12}CO(J=2-1) and {sup 13}CO(J=2-1) transitions at angular resolution of 90 degrees. The most intense core in {sup 13}CO, peak C, was also mapped in the {sup 12}CO(J=4-3) transition at angular resolution of 38 degrees. Peak C shows strong signs of active star formation including bipolar outflow and a far-infrared protostellar source and has a steep gradient with a r{sup -2.2 {+-} 0.4} variation in the average density within radius r. Peak C and the other dense cloud cores are rim-brightened in synchrotron X rays, suggesting that the dense cloud cores are embedded within or on the outer boundary of the SNR shell. This confirms the earlier suggestion that the X rays are physically associated with the molecular gas (Fukui et al. 2003). We present a scenario where the densest molecular core, peak C, survived against the blast wave and is now embedded within the SNR. Numerical simulations of the shock-cloud interaction indicate that …
Date: October 27, 2010
Creator: Sano, H.; Sato, J.; Yamamoto, H.; Hayakawa, T.; Torii, K.; Moribe, N. et al.
Object Type: Article
System: The UNT Digital Library
Structure and Electronic Properties of Cerium Orthophosphate: Theory and Experiment (open access)

Structure and Electronic Properties of Cerium Orthophosphate: Theory and Experiment

Structural and electronic properties of cerium orthophosphate (CePO{sub 4}) are calculated using density functional theory (DFT) with the local spin-density approximation (LSDA+U), with and without gradient corrections (GGA-(PBE)+U), and compared to X-ray diffraction and photoemission spectroscopy measurements. The density of states is found to change significantly as the Hubbard parameter U, which is applied to the Ce 4f states, is varied from 0 to 5 eV. The calculated structural properties are in good agreement with experiment and do not change significantly with U. Choosing U = 3 eV for LDSA provides the best agreement between the calculated density of states and the experimental photoemission spectra.
Date: July 27, 2010
Creator: Adelstein, Nicole; Mun, B. Simon; Ray, Hannah; Ross Jr, Phillip; Neaton, Jeffrey & De Jonghe, Lutgard
Object Type: Article
System: The UNT Digital Library
Studies and proposed changes to the RHIC p-Carbon polarimeters for the upcoming RUN-11 (open access)

Studies and proposed changes to the RHIC p-Carbon polarimeters for the upcoming RUN-11

The RHIC polarized proton complex utilizes polarimeters in each of the Blue and Yellow beams that measure the beam polarization through the p-Carbon elastic scattering process in the Coulomb Nuclear Interference kinematic region. This along with a Polarized Hydrogen Jet Target that utilizes the proton-proton elastic scattering process to first measure the analyzing power of the reaction and using the reverse process to measure the beam polarization. The latter is used to calibrate the p-Carbon polarimeters at the desired beam energy. In Run 9 RHIC ran with beams at center-of-mass energies of 200 and 500 GeV respectively. The higher beam intensities as well as the fact that the 250 GeV beam size is much smaller than that at 100 GeV resulted in significantly higher rates seen by the polarimeters and led to observed instability. In this paper, we will discuss the problems encountered and the tests that were carried out using the AGS as a proxy in an attempt to solve the problems and the path forward we took towards the upcoming polarized proton Run11.
Date: September 27, 2010
Creator: Makdisi, Y.; Alekseev, I.; Aschenauer, E.; Atoian, G.; Bazilevsky, A.; Gill, R. et al.
Object Type: Article
System: The UNT Digital Library
Study of the Rare Hyperon Decay ${\boldmath \Omega^\mp \to \Xi^\mp \: \pi^+\pi^-}$ (open access)

Study of the Rare Hyperon Decay ${\boldmath \Omega^\mp \to \Xi^\mp \: \pi^+\pi^-}$

The authors report a new measurement of the decay {Omega}{sup -} {yields} {Xi}{sup -} {pi}{sup +}{pi}{sup -} with 76 events and a first observation of the decay {bar {Omega}}{sup +} {yields} {bar {Xi}}{sup +} {pi}{sup +}{pi}{sup -} with 24 events, yielding a combined branching ratio (3.74{sub -0.56}{sup +0.67}) x 10{sup -4}. This represents a factor 25 increase in statistics over the best previous measurement. No evidence is seen for CP violation, with {Beta}({Omega}{sup -} {yields} {Xi}{sup -} {pi}{sup +}{pi}{sup -}) = 4.04{sub -0.71}{sup +0.83} x 10{sup -4} and {Beta}({bar {Omega}}{sup +} {yields} {bar {Xi}}{sup +} {pi}{sup +}{pi}{sup -}) = 3.15{sub -0.89}{sup +1.12} x 10{sup -4}. Contrary to theoretical expectation, they see little evidence for the decays {Omega}{sup -} {yields} {Xi}*{sub 1530}{sup 0} {pi}{sup -} and {bar {Omega}}{sup +} {yields} {bar {Xi}}*{sub 1530}{sup 0} {pi}{sup +} and place a 90% C.L. upper limit on the combined branching ratio {Beta}({Omega}{sup -}({bar {Omega}}{sup +}) {yields} {Xi}*{sub 1530}{sup 0} ({bar {Xi}}*{sub 1530}{sup 0}){pi}{sup {-+}}) < 7.0 x 10{sup -5}.
Date: July 27, 2010
Creator: Kamaev, O.; Solomey, N.; Burnstein, R. A.; Chakravorty, A.; CHen, Y. C.; Choong, W. S. et al.
Object Type: Article
System: The UNT Digital Library
A Survey of Wireless Communications for the Electric Power System (open access)

A Survey of Wireless Communications for the Electric Power System

A key mission of the U.S. Department of Energy (DOE) Office of Electricity Delivery and Energy Reliability (OE) is to enhance the security and reliability of the nation’s energy infrastructure. Improving the security of control systems, which enable the automated control of our energy production and distribution, is critical for protecting the energy infrastructure and the integral function that it serves in our lives. The DOE-OE Control Systems Security Program provides research and development to help the energy industry actively pursue advanced security solutions for control systems. The focus of this report is analyzing how, where, and what type of wireless communications are suitable for deployment in the electric power system and to inform implementers of their options in wireless technologies. The discussions in this report are applicable to enhancing both the communications infrastructure of the current electric power system and new smart system deployments. The work described in this report includes a survey of the following wireless technologies: • IEEE 802.16 d and e (WiMAX) • IEEE 802.11 (Wi-Fi) family of a, b, g, n, and s • Wireless sensor protocols that use parts of the IEEE 802.15.4 specification: WirelessHART, International Society of Automation (ISA) 100.11a, and Zigbee • …
Date: January 27, 2010
Creator: Akyol, Bora A.; Kirkham, Harold; Clements, Samuel L. & Hadley, Mark D.
Object Type: Report
System: The UNT Digital Library
Swift-BAT Survey of Galactic Sources: Catalog and Properties of the Populations (open access)

Swift-BAT Survey of Galactic Sources: Catalog and Properties of the Populations

We study the populations of X-ray sources in the Milky Way in the 15-55 keV band using a deep survey with the BAT instrument aboard the Swift observatory. We present the logN-logS distributions of the various source types and we analyze their variability and spectra. For the low-mass X-ray binaries (LMXBs) and the high-mass X-ray binaries (HMXBs) we derive the luminosity functions to a limiting luminosity of L{sub X} {approx} 7 x 10{sup 34} erg s{sup -1}. Our results confirm the previously found flattening of the LMXB luminosity function below a luminosity of L{sub X} {approx} 10{sup 37} erg s{sup -1}. The luminosity function of the HMXBs is found to be significantly flatter in the 15-55 keV band than in the 2-10 keV band. From the luminosity functions we estimate the ratios of the hard X-ray luminosity from HMXBs to the star-formation rate, and the LMXB luminosity to the stellar mass. We use these to estimate the X-ray emissivity in the local universe from X-ray binaries and show that it constitutes only a small fraction of the hard X-ray background.
Date: August 27, 2010
Creator: Voss, R. & Ajello, M.
Object Type: Article
System: The UNT Digital Library
System Architecture of the Dark Energy Survey Camera Readout Electronics (open access)

System Architecture of the Dark Energy Survey Camera Readout Electronics

The Dark Energy Survey makes use of a new camera, the Dark Energy Camera (DECam). DECam will be installed in the Blanco 4M telescope at Cerro Tololo Inter-American Observatory (CTIO). DECam is presently under construction and is expected to be ready for observations in the fall of 2011. The focal plane will make use of 62 2Kx4K and 12 2kx2k fully depleted Charge-Coupled Devices (CCDs) for guiding, alignment and focus. This paper will describe design considerations of the system; including, the entire signal path used to read out the CCDs, the development of a custom crate and backplane, the overall grounding scheme and early results of system tests.
Date: May 27, 2010
Creator: Shaw, Theresa; /FERMILAB; Ballester, Otger; Cardiel-Sas, Laia; Castilla, Javier; /Barcelona, IFAE et al.
Object Type: Article
System: The UNT Digital Library
TANK SPACE ALTERNATIVES ANALYSIS REPORT (open access)

TANK SPACE ALTERNATIVES ANALYSIS REPORT

This report addresses the projected shortfall of double-shell tank (DST) space starting in 2018. Using a multi-variant methodology, a total of eight new-term options and 17 long-term options for recovering DST space were evaluated. These include 11 options that were previously evaluated in RPP-7702, Tank Space Options Report (Rev. 1). Based on the results of this evaluation, two near-term and three long-term options have been identified as being sufficient to overcome the shortfall of DST space projected to occur between 2018 and 2025.
Date: April 27, 2010
Creator: DA, TURNER; NW, KIRCH; DJ, WASHENFELDER; PS, SCHAUS; DD, WODRICH & SA, WIEGMAN
Object Type: Report
System: The UNT Digital Library
Target Science and Technology: Thin Film and Small Scale Mechanical Behavior (open access)

Target Science and Technology: Thin Film and Small Scale Mechanical Behavior

None
Date: July 27, 2010
Creator: Hamza, A. V.
Object Type: Article
System: The UNT Digital Library

Thermal Management of Power Semiconductor Packages - Matching Cooling Technologies with Packaging Technologies

Heat removal for power semiconductor devices is critical for robust operation. Because there are different packaging options, different thermal management technologies, and a range of applications, there is a need for a methodology to match cooling technologies and package configurations to target applications. To meet this need, a methodology was developed to compare the sensitivity of cooling technologies on the overall package thermal performance over a range of power semiconductor packaging configurations. The results provide insight into the trade-offs associated with cooling technologies and package configurations. The approach provides a method for comparing new developments in power semiconductor packages and identifying potential thermal control technologies for the package. The results can help users select the appropriate combination of packaging configuration and cooling technology for the desired application.
Date: April 27, 2010
Creator: Bennion, K. & Moreno, G.
Object Type: Presentation
System: The UNT Digital Library
Tools for Nanotechnology Education Development Program (open access)

Tools for Nanotechnology Education Development Program

The overall focus of this project was the development of reusable, cost-effective educational modules for use with the table top scanning electron microscope (TTSEM). The goal of this project's outreach component was to increase students' exposure to the science and technology of nanoscience.
Date: September 27, 2010
Creator: Moore, Dorothy
Object Type: Report
System: The UNT Digital Library
Tracking tropical cloud systems for the diagnosis of simulations by the weather research and forecasting (WRF) model (open access)

Tracking tropical cloud systems for the diagnosis of simulations by the weather research and forecasting (WRF) model

To aid in improving model parameterizations of clouds and convection, we examine the capability of models, using explicit convection, to simulate the life cycle of tropical cloud systems in the tropical warm pool. The cloud life cycle is determined using a satellite cloud tracking algorithm (Boer and Ramanathan, J. Geophys. Res., 1997), and the statistics are compared to those of simulations using the Weather Research and Forecasting (WRF) Model. Using New York Blue, a Blue Gene/L supercomputer that is co-operated by Brookhaven and Stony Brook, simulations are run at a resolution comparable to the observations. Initial results suggest that the organization of the mesoscale convective systems is particularly sensitive to the cloud microphysics parameterization used.
Date: June 27, 2010
Creator: Vogelmann, A.M.; Lin, W.; Cialella, A.; Luke, E. P.; Jensen, M. P.; Zhang, M. H. et al.
Object Type: Article
System: The UNT Digital Library
T-TY Tank Farm Interim Surface Barrier Demonstration—Vadose Zone Monitoring Plan (open access)

T-TY Tank Farm Interim Surface Barrier Demonstration—Vadose Zone Monitoring Plan

The Hanford Site has 149 underground single-shell tanks that store hazardous radioactive waste. Many of these tanks and their associated infrastructure (e.g., pipelines, diversion boxes) have leaked. Some of the leaked waste has entered the groundwater. The largest known leak occurred from the T-106 Tank of the 241-T Tank Farm in 1973. Five tanks are assumed to have leaked in the TY Farm. Many of the contaminants from those leaks still reside within the vadose zone within the T and TY Tank Farms. The Department of Energy’s Office of River Protection seeks to minimize the movement of these contaminant plumes by placing interim barriers on the ground surface. Such barriers are expected to prevent infiltrating water from reaching the plumes and moving them further. The soil water regime is monitored to determine the effectiveness of the interim surface barriers. Soil-water content and water pressure are monitored using off-the-shelf equipment that can be installed by the hydraulic hammer technique. Four instrument nests were installed in the T Farm in fiscal year (FY) 2006 and FY2007; two nests were installed in the TY Farm in FY2010. Each instrument nest contains a neutron probe access tube, a capacitance probe, and four heat-dissipation units. …
Date: September 27, 2010
Creator: Zhang, Z. F.; Strickland, Christopher E.; Field, Jim G. & Parker, Danny L.
Object Type: Report
System: The UNT Digital Library
Universal Bronsted-Evans-Polanyi Relations for C-C, C-O, C-N, N-O, N-N, and O-O Dissociation Reactions (open access)

Universal Bronsted-Evans-Polanyi Relations for C-C, C-O, C-N, N-O, N-N, and O-O Dissociation Reactions

It is shown that for all the essential bond forming and bond breaking reactions on metal surfaces, the reactivity of the metal surface correlates linearly with the reaction energy in a single universal relation. Such correlations provide an easy way of establishing trends in reactivity among the different transition metals.
Date: October 27, 2010
Creator: Wang, Shengguang
Object Type: Article
System: The UNT Digital Library
Use of High Magnetic Field to Control Microstructural Evolution  in Metallic and Magnetic Materials (open access)

Use of High Magnetic Field to Control Microstructural Evolution in Metallic and Magnetic Materials

The Amendment 1, referred to as Phase 2, to the original CRADA NFE-06-00414 added tasks 3 through 7 to the original statement of work that had two main tasks that were successfully accomplished in Phase 1 of this project. In this Phase 2 CRADA extension, extensive research and development activities were conducted using high magnetic field processing effects for the purpose of manipulating microstructure in the SAE 5160 steel to refine grain size isothermally and to develop nanocrystalline spacing pearlite during continuous cooling, and to enhance the formability/forgability of the non-ferrous precipitation hardening magnesium alloy AZ90 by applying a high magnetic field during deformation processing to investigate potential magnetoplasticity in this material. Significant experimental issues (especially non-isothermal conditions evolving upon insertion of an isothermal sample in the high magnetic field) were encountered in the isothermal phase transformation reversal experiments (Task 4) that later were determined to be due to various condensed matter physics phenomenon such as the magnetocaloric (MCE) effect that occurs in the vicinity of a materials Curie temperature. Similarly the experimental deformation rig had components for monitoring deformation/strain (Task 3) that were susceptible to the high magnetic field of the ORNL Thermomagnetic Processing facility 9-T superconducting magnet that …
Date: June 27, 2010
Creator: Ludtka, G. M.; Mackiewicz- Ludtka, G.; Wilgen, J. B. & Kisner, R. A.
Object Type: Report
System: The UNT Digital Library
Using the X-FEL as a source to investigate photo-pumped X-ray lasers (open access)

Using the X-FEL as a source to investigate photo-pumped X-ray lasers

None
Date: July 27, 2010
Creator: Nilsen, J & Scott, H A
Object Type: Article
System: The UNT Digital Library
What Happened with Spectrometer Magnet 2B (open access)

What Happened with Spectrometer Magnet 2B

The spectrometer solenoid is supposed to be the first magnets installed in MICE [1]-[4]. This report described what happened during the test of the MICE spectrometer solenoid 2B. First, the report describes the temperatures in the magnet, the cooler top plate and the shield during the run where the magnet quenched at 258 A. During this quench, a lead between the bottom of the HTS leads and the diode bank burned out causing the magnet to quench. Second, three methods for measuring the net heat flow into the cold mass are described. Third, there is a discussion of possible resistive heating in the HTS leads between liquid helium temperature and the copper plate, which is at about 50 K. Fourth, there is a discussion of the measured first stage heat loads in the magnet, when there is no current in the magnet. The first stage heat load calculations are based on knowing the first stage temperatures of the three two-stage pulse tube coolers and the single stage GM cooler. Fifth, the estimated heat load to the first stage when the magnet has current in it is discussed. Sixth, there is a comparison of the stage 1 heat loads in magnet …
Date: May 27, 2010
Creator: Green, Michael A.
Object Type: Report
System: The UNT Digital Library